User contributions
From 3DEM-Methods
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- 12:08, 22 June 2015 (diff | hist) . . (+70) . . Main Page (→Automated data collection)
- 15:14, 10 June 2015 (diff | hist) . . (+953) . . N 2014Politis MassSpect (Created page with "== Citation == Politis, A.; Stengel, F.; Hall, Z.; Hernández, H.; Leitner, A.; Walzthoeni, T.; Robinson, C. V. & Aebersold, R. A mass spectrometry-based hybrid method for st...") (current)
- 15:13, 10 June 2015 (diff | hist) . . (+88) . . Main Page (→Fitting and docking)
- 13:02, 29 May 2015 (diff | hist) . . (+1) . . Main Page (→Online courses)
- 13:01, 29 May 2015 (diff | hist) . . (+51) . . Main Page (→Online courses)
- 06:27, 29 May 2015 (diff | hist) . . (+1,398) . . N 2015Cianfrocco Cloud (Created page with "== Citation == Cianfrocco, M. A. & Leschziner, A. E. Low cost, high performance processing of single particle cryo-electron microscopy data in the cloud. Elife, 2015, 4 == A...") (current)
- 06:26, 29 May 2015 (diff | hist) . . (+74) . . Main Page (→Software)
- 06:14, 29 May 2015 (diff | hist) . . (+1,813) . . N 2015Koeck Quadratic (Created page with "== Citation == Koeck, P. J. B., Karshikoff, A. Limitations of the linear and the projection approximations in three-dimensional transmission electron microscopy of fully hydr...") (current)
- 06:12, 29 May 2015 (diff | hist) . . (+112) . . Main Page (→Image formation)
- 14:41, 26 May 2015 (diff | hist) . . (+1,391) . . N 2015Nogales Review (Created page with "== Citation == Nogales, E. & Scheres, S. H. W. Cryo-EM: A Unique Tool for the Visualization of Macromolecular Complexity. Mol Cell, 2015, 58, 677-689 == Abstract == 3D cryo...") (current)
- 14:39, 26 May 2015 (diff | hist) . . (+67) . . Main Page (→Books and reviews)
- 12:32, 11 May 2015 (diff | hist) . . (-20) . . 2015Heymann Alignability (→Abstract) (current)
- 12:31, 11 May 2015 (diff | hist) . . (+2,342) . . N 2015Heymann Alignability (Created page with "== Citation == Heymann, B. Validation of 3DEM Reconstructions: The phantom in the noise AIMS Biophysics, 2015, 2, 21-35 == Abstract == Validation is a necessity to trust t...")
- 12:16, 11 May 2015 (diff | hist) . . (+131) . . Main Page (→Validation)
- 13:00, 1 April 2015 (diff | hist) . . (+2,192) . . N 2015Joubert Pseudoatoms (Created page with "== Citation == Joubert, P. & Habeck, M. Bayesian Inference of Initial Models in Cryo-Electron Microscopy Using Pseudo-atoms. Biophys J, 2015, 108, 1165-1175 == Abstract == ...") (current)
- 12:58, 1 April 2015 (diff | hist) . . (+81) . . Main Page (→3D Alignment)
- 10:29, 31 March 2015 (diff | hist) . . (+2,104) . . N 2014Stagg Reslog (Created page with "== Citation == Stagg, S. M.; Noble, A. J.; Spilman, M. & Chapman, M. S. ResLog plots as an empirical metric of the quality of cryo-EM reconstructions. J Struct Biol, 2014, 18...") (current)
- 10:27, 31 March 2015 (diff | hist) . . (+118) . . Main Page (→Validation)
- 13:54, 17 March 2015 (diff | hist) . . (+3,005) . . N 2013Chen NoiseSubstitution (Created page with "== Citation == Chen, S.; McMullan, G.; Faruqi, A. R.; Murshudov, G. N.; Short, J. M.; Scheres, S. H. W. & Henderson, R. High-resolution noise substitution to measure overfitt...") (current)
- 13:51, 17 March 2015 (diff | hist) . . (+112) . . Main Page (→Validation)
- 07:07, 17 March 2015 (diff | hist) . . (+784) . . N 1982Guckenberger commonOrigin (Created page with "== Citation == Guckenberger, R. Determination of a common origin in the micrographs of titl series in three-dimensional electron microscopy Ultramicroscopy, 1982, 9, 167-174 ...") (current)
- 07:06, 17 March 2015 (diff | hist) . . (+159) . . Main Page (→Image alignment)
- 10:03, 24 February 2015 (diff | hist) . . (+1,345) . . N 2014Sorzano Outlier (Created page with "== Citation == C.O.S. Sorzano, J. Vargas, J.M. de la Rosa-Trevín, A. Zaldívar-Peraza, J. Otón, V. Abrishami, I. Foche, R. Marabini, G. Caffarena, J.M. Carazo. Outlier dete...") (current)
- 10:02, 24 February 2015 (diff | hist) . . (+82) . . Main Page (→2D Classification and clustering)
- 16:32, 9 February 2015 (diff | hist) . . (+39) . . 2011Rullgard ImageSimulation (current)
- 16:29, 9 February 2015 (diff | hist) . . (+2,009) . . N 2011Rullgard ImageSimulation (Created page with "== Citation == Rullgård, H.; Ofverstedt, L.-G.; Masich, S.; Daneholt, B. & Oktem, O. Simulation of transmission electron microscope images of biological specimens. J Microsc...")
- 16:28, 9 February 2015 (diff | hist) . . (+83) . . Main Page (→Image formation)
- 23:51, 7 February 2015 (diff | hist) . . (+60) . . Main Page
- 23:04, 24 January 2015 (diff | hist) . . (+2,197) . . N 2015Cabra Sample (Created page with "== Citation == Cabra, V., Samsó, M. Do's and Don'ts of Cryo-electron Microscopy: A Primer on Sample Preparation and High Quality Data Collection for Macromolecular 3D Recons...") (current)
- 23:02, 24 January 2015 (diff | hist) . . (+100) . . Main Page (→Sample preparation)
- 12:48, 20 January 2015 (diff | hist) . . (+1,505) . . N 2014Chen Migration (Created page with "== Citation == Chen, B.; Shen, B. & Frank, J. Particle migration analysis in iterative classification of cryo-EM single-particle data. J Struct Biol, Department of Biology, 2...") (current)
- 12:47, 20 January 2015 (diff | hist) . . (+89) . . Main Page (→3D Heterogeneity)
- 10:31, 29 December 2014 (diff | hist) . . (+1,931) . . N 2008Taylor Review (Created page with "== Citation == Taylor, K. A. & Glaeser, R. M. Retrospective on the early development of cryoelectron microscopy of macromolecules and a prospective on opportunities for the f...") (current)
- 10:28, 29 December 2014 (diff | hist) . . (+2,006) . . N 2008Mueller Review (Created page with "== Citation == Müller, S. A.; Aebi, U. & Engel, A. What transmission electron microscopes can visualize now and in the future. J Struct Biol, 2008, 163, 235-245 == Abstract...") (current)
- 10:27, 29 December 2014 (diff | hist) . . (+139) . . Main Page (→Books and reviews)
- 10:06, 29 December 2014 (diff | hist) . . (+2,174) . . N 2013Cossio Bayesian (Created page with "== Citation == Cossio, P. & Hummer, G. Bayesian analysis of individual electron microscopy images: towards structures of dynamic and heterogeneous biomolecular assemblies. J ...") (current)
- 10:05, 29 December 2014 (diff | hist) . . (+86) . . Main Page (→Validation)
- 09:24, 29 December 2014 (diff | hist) . . (+2,004) . . N 2014Kunz SART OS (Created page with "== Citation == Kunz, M. & Frangakis, A. S. Super-sampling SART with ordered subsets. J Struct Biol, 2014, 188, 107-115 == Abstract == In tomography, the quality of the reco...") (current)
- 09:23, 29 December 2014 (diff | hist) . . (+68) . . Main Page (→3D Reconstruction)
- 09:16, 29 December 2014 (diff | hist) . . (+1,621) . . N 2014Dashti Brownian (Created page with "== Citation == Dashti, A.; Schwander, P.; Langlois, R.; Fung, R.; Li, W.; Hosseinizadeh, A.; Liao, H. Y.; Pallesen, J.; Sharma, G.; Stupina, V. A.; Simon, A. E.; Dinman, J. D...") (current)
- 09:15, 29 December 2014 (diff | hist) . . (-1) . . Main Page (→3D Heterogeneity)
- 09:15, 29 December 2014 (diff | hist) . . (+97) . . Main Page (→3D Heterogeneity)
- 09:08, 29 December 2014 (diff | hist) . . (+1,105) . . N 2014Bai Review (Created page with "== Citation == Bai, X.-C.; McMullan, G. & Scheres, S. H. How cryo-EM is revolutionizing structural biology Trends in Biochemical Sciences, Elsevier, 2014, 40, 49-57 == Abstr...") (current)
- 09:03, 29 December 2014 (diff | hist) . . (+62) . . Main Page (→Books and reviews)
- 08:23, 29 December 2014 (diff | hist) . . (+1,207) . . N 2014Russo GoldGrids (Created page with "== Citation == Russo, C. J. & Passmore, L. A. Electron microscopy. Ultrastable gold substrates for electron cryomicroscopy. Science, 2014, 346, 1377-1380 == Abstract == Des...") (current)
- 08:22, 29 December 2014 (diff | hist) . . (+73) . . Main Page (→Sample preparation)
- 10:04, 23 December 2014 (diff | hist) . . (+2,108) . . N 2013Lyumkis Optimod (Created page with "== Citation == Lyumkis, D.; Vinterbo, S.; Potter, C. S. & Carragher, B. Optimod--an automated approach for constructing and optimizing initial models for single-particle elec...") (current)
- 10:02, 23 December 2014 (diff | hist) . . (+86) . . Main Page (→3D Reconstruction)
- 05:32, 10 December 2014 (diff | hist) . . (+1,180) . . N 2014Egelman ambiguity (Created page with "== Citation == Egelman, E. H. Ambiguities in helical reconstruction. Elife, 2014, 3 == Abstract == Helical polymers are found throughout biology and account for a substanti...") (current)
- 05:31, 10 December 2014 (diff | hist) . . (+102) . . Main Page (→Helical particles)
- 16:37, 23 November 2014 (diff | hist) . . (+135) . . Main Page (→3D Alignment)
- 05:21, 18 November 2014 (diff | hist) . . (0) . . 2012RubbiyaAli EdgeDetection (→Citation) (current)
- 16:35, 12 November 2014 (diff | hist) . . (+749) . . N 2010Gomez Multislice (Created page with "== Citation == Gómez-Rodrguez, A.; Beltrán-Del-Ro, L. M. & Herrera-Becerra, R. SimulaTEM: multislice simulations for general objects. Ultramicroscopy, 2010, 110, 95-104 ==...") (current)
- 16:34, 12 November 2014 (diff | hist) . . (+78) . . Main Page (→Image formation)
- 16:31, 12 November 2014 (diff | hist) . . (+1,189) . . N 2012Shang HydrationLayer (Created page with "== Citation == Shang, Z. & Sigworth, F. J. Hydration-layer models for cryo-EM image simulation. J Struct Biol, 2012, 180, 10-16 == Abstract == To compare cryo-EM images and...") (current)
- 16:30, 12 November 2014 (diff | hist) . . (+115) . . Main Page (→Image formation)
- 08:23, 7 November 2014 (diff | hist) . . (+1,820) . . N 2014Danev PhasePlate (Created page with "== Citation == Danev, R.; Buijsse, B.; Khoshouei, M.; Plitzko, Jü. M. & Baumeister, W. Volta potential phase plate for in-focus phase contrast transmission electron microsco...") (current)
- 08:12, 7 November 2014 (diff | hist) . . (+70) . . Main Page (→Image formation)
- 16:58, 30 October 2014 (diff | hist) . . (+1,292) . . N 2013Esquivel Modelling (Created page with "== Citation == Esquivel-Rodríguez, J. & Kihara, D. Computational methods for constructing protein structure models from 3D electron microscopy maps. J Struct Biol, 2013, 184...") (current)
- 16:56, 30 October 2014 (diff | hist) . . (+100) . . Main Page (→Fitting and docking)
- 16:54, 30 October 2014 (diff | hist) . . (+1,541) . . N 2013Xu FRET (Created page with "== Citation == Xu, X. P.; Slaughter, B. D. & Volkmann, N. Probabilistic determination of probe locations from distance data. J Struct Biol, 2013, 184, 75-82 == Abstract == ...") (current)
- 16:52, 30 October 2014 (diff | hist) . . (+6) . . Main Page (→Software)
- 16:50, 30 October 2014 (diff | hist) . . (+120) . . Main Page (→Software)
- 16:50, 30 October 2014 (diff | hist) . . (-32) . . Main Page (→Relationship to other structural information sources)
- 15:04, 7 October 2014 (diff | hist) . . (-20) . . Main Page (→Databases)
- 15:02, 7 October 2014 (diff | hist) . . (+143) . . Main Page (→Databases)
- 13:38, 7 October 2014 (diff | hist) . . (+1,435) . . N 2014Rey MassSpect (Created page with "== Citation == Rey M, Sarpe V, Burns KM, Buse J, Baker CA, van Dijk M, Wordeman L, Bonvin AM, Schriemer DC. Mass Spec Studio for Integrative Structural Biology. Structure. 20...") (current)
- 13:36, 7 October 2014 (diff | hist) . . (+1,502) . . N 2007DeVries Haddock (Created page with "== Citation == de Vries SJ, van Dijk AD, Krzeminski M, van Dijk M, Thureau A, Hsu V, Wassenaar T, Bonvin AM. HADDOCK versus HADDOCK: new features and performance of HADDOCK2....") (current)
- 13:33, 7 October 2014 (diff | hist) . . (+150) . . Main Page (→Fitting and docking)
- 17:21, 18 August 2014 (diff | hist) . . (+1,283) . . N 2014Scheres Movies (Created page with "== Citation == Scheres, S. H. Beam-induced motion correction for sub-megadalton cryo-EM particles. Elife, 2014, 3, e03665 == Abstract == In electron cryo-microscopy (cryo-E...") (current)
- 17:20, 18 August 2014 (diff | hist) . . (+71) . . Main Page (→2D Preprocessing)
- 08:16, 13 August 2014 (diff | hist) . . (+1,217) . . N 2012Kucukelbir adaptiveBasis (Created page with "== Citation == Kucukelbir, A.; Sigworth, F. J. & Tagare, H. D. A Bayesian adaptive basis algorithm for single particle reconstruction. J Struct Biol, 2012, 179, 56-67 == Abs...") (current)
- 08:14, 13 August 2014 (diff | hist) . . (+108) . . Main Page (→3D Reconstruction)
- 13:42, 11 August 2014 (diff | hist) . . (+1,611) . . N 2014Russo StatisticalSignificance (Created page with "== Citation == Russo, C. J. & Passmore, L. A. Robust evaluation of 3D electron cryomicroscopy data using tilt-pairs. J Struct Biol, 2014, 187, 112-118 == Abstract == Determ...") (current)
- 13:40, 11 August 2014 (diff | hist) . . (+93) . . Main Page (→Validation)
- 13:39, 11 August 2014 (diff | hist) . . (+1,070) . . N 2014Villa Review (Created page with "== Citation == Villa, E. & Lasker, K. Finding the right fit: chiseling structures out of cryo-electron microscopy maps. Curr Opin Struct Biol, 2014, 25, 118-125 == Abstract ...") (current)
- 13:38, 11 August 2014 (diff | hist) . . (+79) . . Main Page (→Fitting and docking)
- 10:14, 11 August 2014 (diff | hist) . . (+1,648) . . N 2014Yu ReferenceBias (Created page with "== Citation == Yu, Z. & Frangakis, A. S. M-free: scoring the reference bias in sub-tomogram averaging and template matching. J Struct Biol, 2014, 187, 10-19 == Abstract == ...") (current)
- 10:13, 11 August 2014 (diff | hist) . . (+68) . . Main Page (→Subtomogram analysis)
- 10:11, 11 August 2014 (diff | hist) . . (+1,453) . . N 2014Kishchenko SphericalDeconvolution (Created page with "== Citation == Kishchenko, G. P. & Leith, A. Spherical deconvolution improves quality of single particle reconstruction. J Struct Biol, 2014, 187, 84-92 == Abstract == One ...") (current)
- 10:09, 11 August 2014 (diff | hist) . . (+83) . . Main Page (→Sharpening of high resolution information)
- 10:08, 11 August 2014 (diff | hist) . . (+2,195) . . N 2014Voortman LimitingFactors (Created page with "== Citation == Voortman, L. M.; Vulović, M.; Maletta, M.; Voigt, A.; Franken, E. M.; Simonetti, A.; Peters, P. J.; van Vliet, L. J. & Rieger, B. Quantifying resolution limiti...") (current)
- 10:07, 11 August 2014 (diff | hist) . . (+91) . . Main Page (→Subtomogram analysis)
- 05:45, 25 July 2014 (diff | hist) . . (+1,315) . . N 2013Nogales 3DEMLoupe (Created page with "== Citation == Nogales-Cadenas R, Jonic S, Tama F, Arteni AA, Tabas-Madrid D, Vázquez M, Pascual-Montano A, Sorzano CO. 3DEM Loupe: Analysis of macromolecular dynamics using...") (current)
- 05:44, 25 July 2014 (diff | hist) . . (+89) . . Main Page (→Fitting and docking)
- 05:43, 25 July 2014 (diff | hist) . . (+1,544) . . N 2013Vargas ParticleQuality (Created page with "== Citation == Vargas J, Abrishami V, Marabini R, de la Rosa-Trevín JM, Zaldivar A, Carazo JM, Sorzano CO. Particle quality assessment and sorting for automatic and semiauto...") (current)
- 05:42, 25 July 2014 (diff | hist) . . (+92) . . Main Page (→Automatic particle picking)
- 05:41, 25 July 2014 (diff | hist) . . (+92) . . Main Page (→2D Preprocessing)
- 05:40, 25 July 2014 (diff | hist) . . (+1,980) . . N 2013Messaoudi EnergyFiltered (Created page with "== Citation == Messaoudi C, Aschman N, Cunha M, Oikawa T, Sorzano CO, Marco S. Three-dimensional chemical mapping by EFTEM-TomoJ including improvement of SNR by PCA and ART r...") (current)
- 05:39, 25 July 2014 (diff | hist) . . (+91) . . Main Page (→3D reconstruction)
- 05:37, 25 July 2014 (diff | hist) . . (+1,666) . . N 2013DeLaRosa Xmipp30 (Created page with "== Citation == de la Rosa-Trevín JM, Otón J, Marabini R, Zaldívar A, Vargas J, Carazo JM, Sorzano COS. Xmipp 3.0: an improved software suite for image processing in electr...") (current)
- 05:36, 25 July 2014 (diff | hist) . . (+52) . . Main Page (→Software)
- 05:35, 25 July 2014 (diff | hist) . . (+1,967) . . N 2014Vargas RANSAC (Created page with "== Citation == Vargas J, Alvarez-Cabrera AL, Marabini R, Carazo JM, Sorzano COS. Efficient initial volume determination from electron microscopy images of single particles. B...") (current)
- 05:33, 25 July 2014 (diff | hist) . . (+83) . . Main Page (→3D Alignment)
- 05:22, 25 July 2014 (diff | hist) . . (+1,547) . . N 2014AlNasr Secondary (Created page with "== Citation == Al Nasr, K.; Ranjan, D.; Zubair, M.; Chen, L.; He, J. == Abstract == Electron cryomicroscopy is becoming a major experimental technique in solving the struct...")
- 05:21, 25 July 2014 (diff | hist) . . (+103) . . Main Page (→Fitting and docking)
- 05:18, 25 July 2014 (diff | hist) . . (+1,770) . . N 2012Biswas Secondary (Created page with "== Citation == Biswas A, Si D, Al Nasr K, Ranjan D, Zubair M, He J. Improved efficiency in cryo-EM secondary structure topology determination from inaccurate data. J Bioinfor...") (current)
- 05:15, 25 July 2014 (diff | hist) . . (+89) . . Main Page (→Fitting and docking)
- 04:59, 25 July 2014 (diff | hist) . . (+1,442) . . N 2014Jin NMA (Created page with "== Citation == Jin Q, Sorzano COS, de la Rosa-Trevín JM, Bilbao-Castro JR, Núñez-Ramírez R, Llorca O, Tama F, Jonić S. Iterative elastic 3D-to-2D alignment method using ...") (current)
- 04:57, 25 July 2014 (diff | hist) . . (+88) . . Main Page (→3D Heterogeneity)
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