https://3demmethods.i2pc.es/index.php?action=history&feed=atom&title=2017Han_AuTom 2026-05-24T21:07:08Z Revision history for this page on the wiki MediaWiki 1.44.2 https://3demmethods.i2pc.es/index.php?title=2017Han_AuTom&diff=3178&oldid=prev 2017-12-28T07:23:17Z

<p>Created page with &quot;== Citation == Han, R.; Wan, X.; Wang, Z.; Hao, Y.; Zhang, J.; Chen, Y.; Gao, X.; Liu, Z.; Ren, F.; Sun, F. &amp; Zhang, F. AuTom: A novel automatic platform for electron tomogra...&quot;</p> <p><b>New page</b></p><div>== Citation ==<br /> <br /> Han, R.; Wan, X.; Wang, Z.; Hao, Y.; Zhang, J.; Chen, Y.; Gao, X.; Liu, Z.; Ren, F.; Sun, F. &amp; Zhang, F. AuTom: A novel automatic platform for electron tomography reconstruction. Journal of structural biology, 2017, 199, 196-208<br /> <br /> == Abstract ==<br /> <br /> We have developed a software package towards automatic electron tomography (ET): Automatic Tomography (AuTom). The presented package has the following characteristics: accurate alignment modules for marker-free datasets containing substantial biological structures; fully automatic alignment modules for datasets with fiducial markers; wide coverage of reconstruction methods including a new iterative method based on the compressed-sensing theory that suppresses the &quot;missing wedge&quot; effect; and multi-platform acceleration solutions that support faster iterative algebraic reconstruction. AuTom aims to achieve fully automatic alignment and reconstruction for electron tomography and has already been successful for a variety of datasets. AuTom also offers user-friendly interface and auxiliary designs for file management and workflow management, in which fiducial marker-based datasets and marker-free datasets are addressed with totally different subprocesses. With all of these features, AuTom can serve as a convenient and effective tool for processing in electron tomography.<br /> <br /> == Keywords ==<br /> <br /> == Links ==<br /> <br /> https://www.ncbi.nlm.nih.gov/pubmed/28756247<br /> <br /> == Related software ==<br /> <br /> == Related methods ==<br /> <br /> == Comments ==</div>

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