https://3demmethods.i2pc.es/index.php?action=history&feed=atom&title=2022Zheng_Aretomo2022Zheng Aretomo - Revision history2026-05-24T21:11:34ZRevision history for this page on the wikiMediaWiki 1.44.2https://3demmethods.i2pc.es/index.php?title=2022Zheng_Aretomo&diff=4363&oldid=prevWikiSysop: Created page with "== Citation == Zheng, Shawn / Wolff, Georg / Greenan, Garrett / Chen, Zhen / Faas, Frank G. A. / Bárcena, Montserrat / Koster, Abraham J. / Cheng, Yifan / Agard, David A. Ar..."2023-07-04T14:05:24Z<p>Created page with "== Citation == Zheng, Shawn / Wolff, Georg / Greenan, Garrett / Chen, Zhen / Faas, Frank G. A. / Bárcena, Montserrat / Koster, Abraham J. / Cheng, Yifan / Agard, David A. Ar..."</p>
<p><b>New page</b></p><div>== Citation ==<br />
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Zheng, Shawn / Wolff, Georg / Greenan, Garrett / Chen, Zhen / Faas, Frank G. A. / Bárcena, Montserrat / Koster, Abraham J. / Cheng, Yifan / Agard, David A. AreTomo: An integrated software package for automated marker-free, motion-corrected cryo-electron tomographic alignment and reconstruction. 2022. J. Structural Biology X, Vol. 6, p. 100068 <br />
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== Abstract ==<br />
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AreTomo, an abbreviation for Alignment and Reconstruction for Electron Tomography, is a GPU accelerated<br />
software package that fully automates motion-corrected marker-free tomographic alignment and reconstruction<br />
in a single package. By correcting in-plane rotation, translation, and importantly, the local motion resulting from<br />
beam-induced motion from tilt to tilt, AreTomo can produce tomograms with sufficient accuracy to be directly<br />
used for subtomogram averaging. Another major application is the on-the-fly reconstruction of tomograms in<br />
parallel with tilt series collection to provide users with real-time feedback of sample quality allowing users to<br />
make any necessary adjustments of collection parameters. Here, the multiple alignment algorithms implemented<br />
in AreTomo are described and the local motions measured on a typical tilt series are analyzed. The residual local<br />
motion after correction for global motion was found in the range of ± 80 Å, indicating that the accurate<br />
correction of local motion is critical for high-resolution cryo-electron tomography (cryoET).<br />
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== Keywords ==<br />
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== Links ==<br />
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https://www.sciencedirect.com/science/article/pii/S2590152422000095<br />
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== Related software ==<br />
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== Related methods ==<br />
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== Comments ==</div>WikiSysop