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	<title>2025Yan Foundation - Revision history</title>
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	<updated>2026-05-24T20:14:21Z</updated>
	<subtitle>Revision history for this page on the wiki</subtitle>
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		<id>https://3demmethods.i2pc.es/index.php?title=2025Yan_Foundation&amp;diff=5144&amp;oldid=prev</id>
		<title>WikiSysop: Created page with &quot;== Citation ==  Yan, Y., Fan, S., Yuan, F. and Shen, H. 2025. A comprehensive foundation model for cryo-EM image processing. Nature Methods. 23, (2025), 88–95.  == Abstract ==  Cryogenic electron microscopy (cryo-EM) has become a premier technique for determining high-resolution structures of biological macromolecules. However, its broad application is constrained by the demand for specialized expertise. Here, to address this limitation, we introduce the Cryo-EM Image...&quot;</title>
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		<updated>2026-01-16T15:49:12Z</updated>

		<summary type="html">&lt;p&gt;Created page with &amp;quot;== Citation ==  Yan, Y., Fan, S., Yuan, F. and Shen, H. 2025. A comprehensive foundation model for cryo-EM image processing. Nature Methods. 23, (2025), 88–95.  == Abstract ==  Cryogenic electron microscopy (cryo-EM) has become a premier technique for determining high-resolution structures of biological macromolecules. However, its broad application is constrained by the demand for specialized expertise. Here, to address this limitation, we introduce the Cryo-EM Image...&amp;quot;&lt;/p&gt;
&lt;p&gt;&lt;b&gt;New page&lt;/b&gt;&lt;/p&gt;&lt;div&gt;== Citation ==&lt;br /&gt;
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Yan, Y., Fan, S., Yuan, F. and Shen, H. 2025. A comprehensive foundation model for cryo-EM image processing. Nature Methods. 23, (2025), 88–95.&lt;br /&gt;
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== Abstract ==&lt;br /&gt;
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Cryogenic electron microscopy (cryo-EM) has become a premier technique for determining high-resolution structures of biological macromolecules. However, its broad application is constrained by the demand for specialized expertise. Here, to address this limitation, we introduce the Cryo-EM Image Evaluation Foundation (Cryo-IEF) model, a versatile tool pre-trained on ~65 million cryo-EM particle images through unsupervised learning. Cryo-IEF performs diverse cryo-EM processing tasks, including particle classification by structure, pose-based clustering and image quality assessment. Building on this foundation, we developed CryoWizard, a fully automated single-particle cryo-EM processing pipeline enabled by fine-tuned Cryo-IEF for efficient particle quality ranking. CryoWizard resolves high-resolution structures across samples of varied properties and effectively mitigates the prevalent challenge of preferred orientation in cryo-EM.&lt;br /&gt;
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== Keywords ==&lt;br /&gt;
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== Links ==&lt;br /&gt;
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https://www.nature.com/articles/s41592-025-02916-8&lt;br /&gt;
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== Related software ==&lt;br /&gt;
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== Related methods ==&lt;br /&gt;
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== Comments ==&lt;/div&gt;</summary>
		<author><name>WikiSysop</name></author>
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