2004Sorzano Xmipp

Citation

Sorzano, C. O. S.; Marabini, R.; Velázquez-Muriel, J.; Bilbao-Castro, J. R.; Scheres, S. H. W.; Carazo, J. M. & Pascual-Montano, A. XMIPP: A new generation of an open-source image processing package for Electron Microscopy J. Structural Biology, 2004, 148, 194-204

BibTex

 @ARTICLE{Sorzano2004d,
   author = {Sorzano, C. O. S. and Marabini, R. and and Velázquez-Muriel, J. and
           Bilbao-Castro, J. R. and Scheres, S. H. W. and Carazo, J. M. and
           Pascual-Montano, A.},
   title = {{XMIPP}: {A} new generation of an open-source image processing package
           for Electron Microscopy},
   journal = jsb,
   year = {2004},
   volume = {148},
   pages = {194-204}
 }

Cited by

Abstract

X-windows based microscopy image processing package (Xmipp) is a specialized suit of image processing programs, primarily aimed at obtaining the 3D reconstruction of biological specimens from large sets of projection images acquired by transmission electron microscopy. This public-domain software package was introduced to the electron microscopy field eight years ago, and since then it has changed drastically. New methodologies for the analysis of single-particle projection images have been added to classification, contrast transfer function correction, angular assignment, 3D reconstruction, reconstruction of crystals, etc. In addition, the package has been extended with functionalities for 2D crystal and electron tomography data. Furthermore, its current implementation in C++, with a highly modular design of well-documented data structures and functions, offers a convenient environment for the development of novel algorithms. In this paper, we present a general overview of a new generation of Xmipp that has been re-engineered to maximize flexibility and modularity, potentially facilitating its integration in future standardization efforts in the field. Moreover, by focusing on those developments that distinguish Xmipp from other packages available, we illustrate its added value to the electron microscopy community.

Keywords

3D Reconstruction of single particles, 3D Reconstruction of electron tomography

Links

Article http://linkinghub.elsevier.com/retrieve/pii/S1047847704001261

Related software

Xmipp: http://xmipp.cnb.csic.es