User contributions
From 3DEM-Methods
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- 06:16, 20 July 2017 (diff | hist) . . (+1,052) . . N 2015Hanson Continuum (Created page with "== Citation == Hanson, B.; Richardson, R.; Oliver, R.; Read, D. J.; Harlen, O. & Harris, S. Modelling biomacromolecular assemblies with continuum mechanics. Biochemical Socie...") (current)
- 06:14, 20 July 2017 (diff | hist) . . (+88) . . Main Page (→Fitting and docking)
- 06:03, 20 July 2017 (diff | hist) . . (+1,345) . . N 2017He FIB (Created page with "== Citation == He, J.; Hsieh, C.; Wu, Y.; Schmelzer, T.; Wang, P.; Lin, Y.; Marko, M. & Sui, H. Cryo-FIB specimen preparation for use in a cartridge-type cryo-TEM. Journal of...") (current)
- 06:02, 20 July 2017 (diff | hist) . . (+6) . . Main Page (→Sample preparation)
- 06:01, 20 July 2017 (diff | hist) . . (+50) . . Main Page (→Sample preparation)
- 06:14, 4 July 2017 (diff | hist) . . (+2,006) . . N 2017Turk ModelBuilding (Created page with "== Citation == Turk, D. Boxes of Model Building and Visualization. Methods in molecular biology, 2017, 1607, 491-548 == Abstract == Macromolecular crystallography and elect...") (current)
- 06:13, 4 July 2017 (diff | hist) . . (+97) . . Main Page (→Fitting and docking)
- 06:10, 4 July 2017 (diff | hist) . . (+1,400) . . N 2017Moriya Sphire (Created page with "== Citation == Moriya, T.; Saur, M.; Stabrin, M.; Merino, F.; Voicu, H.; Huang, Z.; Penczek, P. A.; Raunser, S. & Gatsogiannis, C. High-resolution Single Particle Analysis fr...") (current)
- 06:09, 4 July 2017 (diff | hist) . . (+69) . . Main Page (→Software)
- 06:07, 4 July 2017 (diff | hist) . . (+1,157) . . N 2017Galaz Review (Created page with "== Citation == Galaz-Montoya, J. G. & Ludtke, S. J. The advent of structural biology in situ by single particle cryo-electron tomography Biophysics Reports, Springer, 2017, 1...") (current)
- 06:06, 4 July 2017 (diff | hist) . . (+75) . . Main Page (→Books and reviews)
- 06:02, 4 July 2017 (diff | hist) . . (+1,184) . . N 2017Scherr HydrogelNanomembranes (Created page with "== Citation == Scherr, J.; Parey, K.; Klusch, N.; Murphy, B. J.; Balser, S.; Neuhaus, A.; Zickermann, V.; Kühlbrandt, W.; Terfort, A. & Rhinow, D. Self-Perforated Hydrogel N...") (current)
- 06:00, 4 July 2017 (diff | hist) . . (+94) . . Main Page (→Sample preparation)
- 05:45, 19 June 2017 (diff | hist) . . (+2,078) . . N 2017Joseph Metrics (Created page with "== Citation == Joseph, A. P.; Lagerstedt, I.; Patwardhan, A.; Topf, M. & Winn, M. Improved metrics for comparing structures of macromolecular assemblies determined by 3D elec...") (current)
- 05:44, 19 June 2017 (diff | hist) . . (+90) . . Main Page (→Fitting and docking)
- 05:38, 19 June 2017 (diff | hist) . . (+1,485) . . N 2017Frazier Tomominer (Created page with "== Citation == Frazier, Z.; Xu, M. & Alber, F. TomoMiner and TomoMinerCloud: A Software Platform for Large-Scale Subtomogram Structural Analysis. Structure, 2017, 25, 951-961...") (current)
- 05:37, 19 June 2017 (diff | hist) . . (+109) . . Main Page (→Subtomogram analysis)
- 05:34, 19 June 2017 (diff | hist) . . (+1,252) . . N 2017Punjani CryoSPARCTheory (Created page with "== Citation == Punjani, A.; Brubaker, M. A. & Fleet, D. J. Building Proteins in a Day: Efficient 3D Molecular Structure Estimation with Electron Cryomicroscopy. IEEE transact...") (current)
- 05:33, 19 June 2017 (diff | hist) . . (+77) . . Main Page (→3D Reconstruction)
- 05:19, 13 June 2017 (diff | hist) . . (+747) . . N 2017Scapin Storage (Created page with "== Citation == Scapin, G.; Prosise, W. W.; Wismer, M. K. & Strickland, C. A novel storage system for cryoEM samples. Journal of structural biology, 2017, 199, 84-86 == Abstr...") (current)
- 05:18, 13 June 2017 (diff | hist) . . (+63) . . Main Page (→Sample preparation)
- 14:25, 19 May 2017 (diff | hist) . . (+1,257) . . N 2017Biyani Focus (Created page with "== Citation == Biyani, N.; Righetto, R. D.; McLeod, R.; Caujolle-Bert, D.; Castano-Diez, D.; Goldie, K. N. & Stahlberg, H. Focus: The interface between data collection and da...") (current)
- 14:23, 19 May 2017 (diff | hist) . . (+74) . . Main Page (→Automated data collection)
- 13:06, 19 May 2017 (diff | hist) . . (+2,119) . . N 2017Wan Simulator (Created page with "== Citation == Wan, X.; Katchalski, T.; Churas, C.; Ghosh, S.; Phan, S.; Lawrence, A.; Hao, Y.; Zhou, Z.; Chen, R.; Chen, Y.; Zhang, F. & Ellisman, M. H. Electron tomography...") (current)
- 13:05, 19 May 2017 (diff | hist) . . (+69) . . Main Page (→Software)
- 12:57, 19 May 2017 (diff | hist) . . (+1,512) . . N 2017Rawson Limitations (Created page with "== Citation == Rawson, S.; McPhillie, M.; Johnson, R.; Fishwick, C. & Muench, S. The potential use of single-particle electron microscopy as a tool for structure-based inhibi...") (current)
- 12:56, 19 May 2017 (diff | hist) . . (+78) . . Main Page (→Books and reviews)
- 07:54, 17 May 2017 (diff | hist) . . (+1,546) . . N 2017Miyashita EnsembleFitting (Created page with "== Citation == Miyashita, O.; Kobayashi, C.; Mori, T.; Sugita, Y. & Tama, F. Flexible fitting to cryo-EM density map using ensemble molecular dynamics simulations. Journal of...") (current)
- 07:53, 17 May 2017 (diff | hist) . . (+93) . . Main Page (→Fitting and docking)
- 06:16, 17 May 2017 (diff | hist) . . (+1,103) . . N 2017Feng SprayingPlunging (Created page with "== Citation == Feng, X.; Fu, Z.; Kaledhonkar, S.; Jia, Y.; Shah, B.; Jin, A.; Liu, Z.; Sun, M.; Chen, B.; Grassucci, R. A.; Ren, Y.; Jiang, H.; Frank, J. & Lin, Q. A Fast and...") (current)
- 06:15, 17 May 2017 (diff | hist) . . (+64) . . Main Page (→Sample preparation)
- 06:12, 17 May 2017 (diff | hist) . . (+1,467) . . N 2017Matsumoto Distribution (Created page with "== Citation == Matsumoto, A.; Miyazaki, N.; Takagi, J. & Iwasaki, K. 2D hybrid analysis: Approach for building three-dimensional atomic model by electron microscopy image mat...") (current)
- 06:11, 17 May 2017 (diff | hist) . . (+110) . . Main Page (→Fitting and docking)
- 06:08, 17 May 2017 (diff | hist) . . (+1,781) . . N 2017Patwhardan Trends (Created page with "== Citation == Patwardhan, A. Trends in the Electron Microscopy Data Bank (EMDB) Acta Crystallographica Section D: Structural Biology, International Union of Crystallography,...") (current)
- 06:07, 17 May 2017 (diff | hist) . . (+58) . . Main Page (→Databases)
- 21:37, 11 May 2017 (diff | hist) . . (+1,670) . . N 2013Ison EDAM (Created page with "== Citation == Ison, J.; Kalas, M.; Jonassen, I.; Bolser, D.; Uludag, M.; McWilliam, H.; Malone, J.; Lopez, R.; Pettifer, S. & Rice, P. EDAM: an ontology of bioinformatics op...") (current)
- 21:37, 11 May 2017 (diff | hist) . . (+82) . . Main Page (→Databases)
- 21:04, 11 May 2017 (diff | hist) . . (+1,137) . . N 2017Zheng MotionCorr2 (Created page with "== Citation == Zheng, S. Q.; Palovcak, E.; Armache, J.-P.; Verba, K. A.; Cheng, Y. & Agard, D. A. MotionCor2: anisotropic correction of beam-induced motion for improved cryo-...") (current)
- 21:00, 11 May 2017 (diff | hist) . . (+74) . . Main Page (→2D Preprocessing)
- 20:53, 11 May 2017 (diff | hist) . . (+1,086) . . N 2017Arnold BlottingFree (Created page with "== Citation == Arnold, S. A.; Albiez, S.; Bieri, A.; Syntychaki, A.; Adaixo, R.; McLeod, R. A.; Goldie, K. N.; Stahlberg, H. & Braun, T. Blotting-free and lossless cryo-elect...") (current)
- 20:53, 11 May 2017 (diff | hist) . . (+70) . . Main Page (→Sample preparation)
- 20:49, 11 May 2017 (diff | hist) . . (+1,953) . . N 2017Mastronarde Automatic (Created page with "== Citation == Mastronarde, D. N. & Held, S. R. Automated tilt series alignment and tomographic reconstruction in IMOD. Journal of structural biology, 2017, 197, 102-113 ==...") (current)
- 20:48, 11 May 2017 (diff | hist) . . (+109) . . Main Page (→Image alignment)
- 20:44, 11 May 2017 (diff | hist) . . (-41) . . 2017Schaffer FocusedIonBeam (→Links) (current)
- 20:43, 11 May 2017 (diff | hist) . . (+1,692) . . N 2017Schaffer FocusedIonBeam (Created page with "== Citation == Schaffer, M.; Mahamid, J.; Engel, B. D.; Laugks, T.; Baumeister, W. & Plitzko, J. M. Optimized cryo-focused ion beam sample preparation aimed at in situ struct...")
- 20:42, 11 May 2017 (diff | hist) . . (+106) . . Main Page (→Sample preparation)
- 20:37, 11 May 2017 (diff | hist) . . (+1,652) . . N 2017Hryc WeightedAtoms (Created page with "== Citation == Hryc, C. F.; Chen, D.-H.; Afonine, P. V.; Jakana, J.; Wang, Z.; Haase-Pettingell, C.; Jiang, W.; Adams, P. D.; King, J. A.; Schmid, M. F. & Chiu, W. Accurate m...") (current)
- 20:30, 11 May 2017 (diff | hist) . . (+115) . . Main Page (→Fitting and docking)
- 20:24, 11 May 2017 (diff | hist) . . (+5) . . Main Page (→2D Preprocessing)
- 20:23, 11 May 2017 (diff | hist) . . (+1,314) . . N 2016Bajic Denoising (Created page with "== Citation == Bajić, B.; Lindblad, J. & Sladoje, N. Blind restoration of images degraded with mixed Poisson-Gaussian noise with application in transmission electron m...")
- 20:22, 11 May 2017 (diff | hist) . . (+84) . . Main Page (→2D Preprocessing)
- 20:09, 11 May 2017 (diff | hist) . . (+1,820) . . N 2017Kunz 3DCTF (Created page with "== Citation == Kunz, M. & Frangakis, A. S. Three-dimensional CTF correction improves the resolution of electron tomograms. Journal of structural biology, 2017, 197, 114-122...") (current)
- 20:08, 11 May 2017 (diff | hist) . . (+54) . . Main Page (→CTF estimation and restoration)
- 20:05, 11 May 2017 (diff | hist) . . (+2,003) . . N 2017Castano ParticlePicking (Created page with "== Citation == Castaño-Díez, D.; Kudryashev, M. & Stahlberg, H. Dynamo Catalogue: Geometrical tools and data management for particle picking in subtomogram averaging of cry...") (current)
- 20:04, 11 May 2017 (diff | hist) . . (+104) . . Main Page (→Subtomogram analysis)
- 20:02, 11 May 2017 (diff | hist) . . (+1,588) . . N 2017Hagen DoseTomography (Created page with "== Citation == Hagen, W. J. H.; Wan, W. & Briggs, J. A. G. Implementation of a cryo-electron tomography tilt-scheme optimized for high resolution subtomogram averaging. Journ...") (current)
- 20:01, 11 May 2017 (diff | hist) . . (+90) . . Main Page (→Collection geometry)
- 13:44, 11 May 2017 (diff | hist) . . (+1,498) . . N 2017McLeod Zorro (Created page with "== Citation == McLeod, R. A.; Kowal, J.; Ringler, P. & Stahlberg, H. Robust image alignment for cryogenic transmission electron microscopy. Journal of structural biology, 201...") (current)
- 13:43, 11 May 2017 (diff | hist) . . (+63) . . Main Page (→2D Preprocessing)
- 22:13, 6 May 2017 (diff | hist) . . (+143) . . Main Page (→Online courses)
- 06:29, 3 April 2017 (diff | hist) . . (+1,435) . . N 2017Shao PDBQuality (Created page with "== Citation == Shao, C.; Yang, H.; Westbrook, J. D.; Young, J. Y.; Zardecki, C. & Burley, S. K. Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Arc...") (current)
- 06:28, 3 April 2017 (diff | hist) . . (+64) . . Main Page (→Databases)
- 07:06, 24 March 2017 (diff | hist) . . (+1,206) . . N 2017Mishyna DNARadiation (Created page with "== Citation == Mishyna, M.; Volokh, O.; Danilova, Y.; Gerasimova, N.; Pechnikova, E. & Sokolova, O. S. Effects of radiation damage in studies of protein-DNA complexes by cryo...") (current)
- 07:05, 24 March 2017 (diff | hist) . . (+80) . . Main Page (→Image formation)
- 18:35, 13 March 2017 (diff | hist) . . (+1,302) . . N 2017Monroe PDBRefinement (Created page with "== Citation == Monroe, L.; Terashi, G. & Kihara, D. Variability of Protein Structure Models from Electron Microscopy. Structure, 25:1-11, 2017 == Abstract == An increasing...") (current)
- 18:34, 13 March 2017 (diff | hist) . . (+88) . . Main Page (→Validation)
- 18:25, 13 March 2017 (diff | hist) . . (+1,784) . . N 2017Sorzano FourierProperties (Created page with "== Citation == Sorzano, C. O. S.; Vargas, J.; Otón, J.; Abrishami, V.; de la Rosa-Trevín, J. M.; Gómez-Blanco, J.; Vilas, J. L.; Marabini, R. & Carazo, J. M. A review of r...") (current)
- 18:24, 13 March 2017 (diff | hist) . . (0) . . Main Page (→Resolution)
- 18:24, 13 March 2017 (diff | hist) . . (0) . . Main Page (→Books and reviews)
- 18:22, 13 March 2017 (diff | hist) . . (+131) . . Main Page (→Books and reviews)
- 18:21, 13 March 2017 (diff | hist) . . (+122) . . Main Page (→Resolution)
- 15:31, 21 February 2017 (diff | hist) . . (+974) . . N 2016Beck Review (Created page with "== Citation == Beck, M. & Baumeister, W. Cryo-Electron Tomography: Can it Reveal the Molecular Sociology of Cells in Atomic Detail? Trends in cell biology, 2016, 26, 825-837...") (current)
- 15:29, 21 February 2017 (diff | hist) . . (+67) . . Main Page (→Books and reviews)
- 14:30, 21 February 2017 (diff | hist) . . (+2,095) . . N 2016Galaz SingleParticleTomography (Created page with "== Citation == Galaz-Montoya, J. G.; Hecksel, C. W.; Baldwin, P. R.; Wang, E.; Weaver, S. C.; Schmid, M. F.; Ludtke, S. J. & Chiu, W. Alignment algorithms and per-particle CT...") (current)
- 14:28, 21 February 2017 (diff | hist) . . (+96) . . Main Page (→Single particle tomography)
- 13:49, 21 February 2017 (diff | hist) . . (+1,395) . . N 2017Punjani CryoSPARC (Created page with "== Citation == Punjani, A.; Rubinstein, J. L.; Fleet, D. J. & Brubaker, M. A. cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination. Nature methods, 20...") (current)
- 13:48, 21 February 2017 (diff | hist) . . (+53) . . Main Page (→3D Heterogeneity)
- 13:48, 21 February 2017 (diff | hist) . . (+53) . . Main Page (→3D Reconstruction)
- 06:49, 16 February 2017 (diff | hist) . . (+96) . . Main Page (→Electron microscopy images)
- 13:39, 12 January 2017 (diff | hist) . . (+897) . . N 2017Frank Review (Created page with "== Citation == Frank, J. Advances in the field of single-particle cryo-electron microscopy over the last decade. Nature protocols, 2017, 12, 209-212 == Abstract == In singl...") (current)
- 13:38, 12 January 2017 (diff | hist) . . (+1) . . Main Page (→Books and reviews)
- 13:37, 12 January 2017 (diff | hist) . . (+61) . . Main Page (→Books and reviews)
- 09:44, 4 January 2017 (diff | hist) . . (+993) . . N 2014Tomonaga Automatic (Created page with "== Citation == Tomonaga, S.; Baba, M. & Baba, N. Alternative automatic alignment method for specimen tilt-series images based on back-projected volume data cross-correlations...") (current)
- 09:43, 4 January 2017 (diff | hist) . . (+111) . . Main Page (→Image alignment)
- 09:38, 4 January 2017 (diff | hist) . . (+1,337) . . N 2014Han Automatic (Created page with "== Citation == Han, R.; Zhang, F.; Wan, X.; Fernández, J.-J.; Sun, F. & Liu, Z. A marker-free automatic alignment method based on scale-invariant features. Journal of struct...") (current)
- 09:34, 4 January 2017 (diff | hist) . . (+110) . . Main Page (→Image alignment)
- 09:32, 4 January 2017 (diff | hist) . . (+2,194) . . N 2015Han Automatic (Created page with "== Citation == Han, R.; Wang, L.; Liu, Z.; Sun, F. & Zhang, F. A novel fully automatic scheme for fiducial marker-based alignment in electron tomography. Journal of structura...") (current)
- 08:56, 4 January 2017 (diff | hist) . . (+74) . . Main Page (→Image alignment)
- 12:50, 3 January 2017 (diff | hist) . . (+1,938) . . N 2016Joseph Evolution (Created page with "== Citation == Joseph, A. P.; Swapna, L. S.; Rakesh, R. & Srinivasan, N. Use of evolutionary information in the fitting of atomic level protein models in low resolution cryo-...") (current)
- 12:26, 3 January 2017 (diff | hist) . . (+118) . . Main Page (→Fitting and docking)
- 07:01, 3 January 2017 (diff | hist) . . (+1,720) . . N 2016Jonic PseudoAtoms (Created page with "== Citation == S. Jonic and C.O.S. Sorzano. Versatility of Approximating Single-Particle Electron Microscopy Density Maps Using Pseudoatoms and Approximation-Accuracy Control...") (current)
- 06:58, 3 January 2017 (diff | hist) . . (+102) . . Main Page (→Books and reviews)
- 06:48, 3 January 2017 (diff | hist) . . (+1,694) . . N 2016Vilas AutomaticTilt (Created page with "== Citation == Vilas, J. L.; Navas, J.; Gómez-Blanco, J.; de la Rosa-Trevín, J. M.; Melero, R.; Peschiera, I.; Ferlenghi, I.; Cuenca, J.; Marabini, R.; Carazo, J. M.; Varga...") (current)
- 06:48, 3 January 2017 (diff | hist) . . (+121) . . Main Page (→Automatic particle picking)
- 06:43, 3 January 2017 (diff | hist) . . (+1,633) . . N 2016Vargas FoilHole (Created page with "== Citation == Vargas, J.; Franken, E.; Sorzano, C. O. S.; Gomez-Blanco, J.; Schoenmakers, R.; Koster, A. J. & Carazo, J. M. Foil-hole and data image quality assessment in 3D...") (current)
- 06:42, 3 January 2017 (diff | hist) . . (+93) . . Main Page (→Automated data collection)
- 06:27, 3 January 2017 (diff | hist) . . (+1,492) . . N 2016Patwhardan EMDB (Created page with "== Citation == Patwardhan, A. & Lawson, C. L. Databases and Archiving for CryoEM. Methods in enzymology, 2016, 579, 393-41 == Abstract == CryoEM in structural biology is cu...") (current)
- 06:26, 3 January 2017 (diff | hist) . . (+56) . . Main Page (→Databases)
- 06:22, 3 January 2017 (diff | hist) . . (+1,484) . . N 2016Wang Rosetta (Created page with "== Citation == Wang, R. Y.-R.; Song, Y.; Barad, B. A.; Cheng, Y.; Fraser, J. S. & DiMaio, F. Automated structure refinement of macromolecular assemblies from cryo-EM maps usi...") (current)
- 06:21, 3 January 2017 (diff | hist) . . (+103) . . Main Page (→Fitting and docking)
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