User contributions
From 3DEM-Methods
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- 11:51, 7 January 2016 (diff | hist) . . (+737) . . N 1996Fung Automatic (Created page with "== Citation == Fung, J. C.; Liu, W.; de Ruitjer, W. J.; Chen, H.; Abbey, C. K.; Sedat, J. W. & Agard, D. A. Toward fully automated high-resolution electron tomography J. Stru...") (current)
- 11:49, 7 January 2016 (diff | hist) . . (+81) . . Main Page (→Automated data collection)
- 11:45, 7 January 2016 (diff | hist) . . (+2,127) . . N 2015Moriya Bayesian (Created page with "== Citation == Moriya, T.; Acar, E.; Cheng, R. H. & Ruotsalainen, U. A Bayesian approach for suppression of limited angular sampling artifacts in single particle 3D reconstru...")
- 11:43, 7 January 2016 (diff | hist) . . (+97) . . Main Page (→3D Reconstruction)
- 08:46, 4 January 2016 (diff | hist) . . (+1,600) . . N 2016Yang Flexible (Created page with "== Citation == Yang, S.; Woodhead, J. L.; Zhao, F.-Q.; Sulbarán, G. & Craig, R. An approach to improve the resolution of helical filaments with a large axial rise and flexib...") (current)
- 08:45, 4 January 2016 (diff | hist) . . (+97) . . Main Page (→Filament corrections)
- 09:41, 29 December 2015 (diff | hist) . . (+2,067) . . N 2015Rubinstein Alignment (Created page with "== Citation == Rubinstein, J. L. & Brubaker, M. A. Alignment of cryo-EM movies of individual particles by optimization of image translations. J Struct Biol, 2015, 192, 188-19...") (current)
- 09:40, 29 December 2015 (diff | hist) . . (+87) . . Main Page (→2D Preprocessing)
- 09:37, 29 December 2015 (diff | hist) . . (+1,328) . . N 2015Lobato MULTEM (Created page with "== Citation == Lobato, I. & Van Dyck, D. MULTEM: A new multislice program to perform accurate and fast electron diffraction and imaging simulations using Graphics Processing ...") (current)
- 09:36, 29 December 2015 (diff | hist) . . (+76) . . Main Page (→Image formation)
- 09:33, 29 December 2015 (diff | hist) . . (+1,341) . . N 2015Dvornek SubspaceEM (Created page with "== Citation == Dvornek, N. C.; Sigworth, F. J. & Tagare, H. D. SubspaceEM: A fast maximum-a-posteriori algorithm for cryo-EM single particle reconstruction. J Struct Biol, 20...") (current)
- 09:33, 29 December 2015 (diff | hist) . . (+70) . . Main Page (→3D Reconstruction)
- 09:28, 29 December 2015 (diff | hist) . . (+1,083) . . N 2015vanAarle Astra (Created page with "== Citation == van Aarle, W.; Palenstijn, W. J.; De Beenhouwer, J.; Altantzis, T.; Bals, S.; Batenburg, K. J. & Sijbers, J. The ASTRA Toolbox: A platform for advanced algorit...") (current)
- 09:26, 29 December 2015 (diff | hist) . . (+54) . . Main Page (→Software)
- 09:24, 29 December 2015 (diff | hist) . . (+1,511) . . N 2015Sheth CTFquality (Created page with "== Citation == Sheth, L. K.; Piotrowski, A. L. & Voss, N. R. Visualization and quality assessment of the contrast transfer function estimation. J Struct Biol, 2015, 222-234 ...") (current)
- 09:23, 29 December 2015 (diff | hist) . . (+86) . . Main Page (→CTF estimation and restoration)
- 09:05, 29 December 2015 (diff | hist) . . (+1,253) . . N 2015Grant Anisotropic (Created page with "== Citation == Grant, T. & Grigorieff, N. Automatic estimation and correction of anisotropic magnification distortion in electron microscopes. J Struct Biol, 2015, 192, 204-2...") (current)
- 09:04, 29 December 2015 (diff | hist) . . (+108) . . Main Page (→2D Preprocessing)
- 11:30, 28 December 2015 (diff | hist) . . (+1,074) . . N 2016Koeck ADF (Created page with "== Citation == Koeck, P. J. B. Annular dark field transmission electron microscopy for protein structure determination. Ultramicroscopy, 2016, 161, 98-104 == Abstract == Re...") (current)
- 11:28, 28 December 2015 (diff | hist) . . (+73) . . Main Page (→Image formation)
- 11:21, 28 December 2015 (diff | hist) . . (+1,607) . . N 2016Zhang GCTF (Created page with "== Citation == Zhang, K. Gctf: real-time CTF determination and correction. J Struct Biol, 2016, 193: 1-12 == Abstract == Accurate estimation of the contrast transfer functi...") (current)
- 11:20, 28 December 2015 (diff | hist) . . (+41) . . Main Page (→CTF estimation and restoration)
- 11:10, 28 December 2015 (diff | hist) . . (+1,748) . . N 2007Woolford SwarmPS (Created page with "== Citation == Woolford, D.; Ericksson, G.; Rothnagel, R.; Muller, D.; Landsberg, M. J.; Pantelic, R. S.; McDowall, A.; Pailthorpe, B.; Young, P. R.; Hankamer, B. & Banks, J....") (current)
- 11:09, 28 December 2015 (diff | hist) . . (+1) . . Main Page (→Automatic particle picking)
- 11:08, 28 December 2015 (diff | hist) . . (+118) . . Main Page (→Automatic particle picking)
- 10:51, 28 December 2015 (diff | hist) . . (+1,437) . . N 2014Wasilewski Tilt (Created page with "== Citation == Wasilewski, S. & Rosenthal, P. B. Web server for tilt-pair validation of single particle maps from electron cryomicroscopy. J. Structural Biology, 2014, 186, 1...") (current)
- 10:49, 28 December 2015 (diff | hist) . . (+88) . . Main Page (→Validation)
- 10:29, 28 December 2015 (diff | hist) . . (+27) . . N 2015Wu Review (CoSS moved page 2015Wu Review to 2016Wu Review) (current)
- 10:29, 28 December 2015 (diff | hist) . . (0) . . m 2016Wu Review (CoSS moved page 2015Wu Review to 2016Wu Review) (current)
- 10:27, 28 December 2015 (diff | hist) . . (+796) . . N 2016Wu Review (Created page with "== Citation == Wu, S.; Armache, J.-P. & Cheng, Y. Single-particle cryo-EM data acquisition by using direct electron detection camera. Microscopy, 2015 == Abstract == Recent...")
- 10:25, 28 December 2015 (diff | hist) . . (+81) . . Main Page (→Books and reviews)
- 10:15, 28 December 2015 (diff | hist) . . (+1,668) . . N 2003Kovacs FRM3D (Created page with "== Citation == Kovacs, J. A.; Chacón, P.; Cong, Y.; Metwally, E. & Wriggers, W. Fast rotational matching of rigid bodies by fast Fourier transform acceleration of five degre...") (current)
- 10:14, 28 December 2015 (diff | hist) . . (+79) . . Main Page (→Fitting and docking)
- 10:12, 28 December 2015 (diff | hist) . . (+1,379) . . N 2005Cong FRM2D (Created page with "== Citation == Cong, Y.; Jiang, W.; Birmanns, S.; Zhou, Z. H.; Chiu, W. & Wriggers, W. Fast rotational matching of single-particle images. J Struct Biol, 2005, 152, 104-112 ...") (current)
- 10:11, 28 December 2015 (diff | hist) . . (+1,738) . . N 2003Cong FRM2D (Created page with "== Citation == Cong, Y.; Kovacs, J. A. & Wriggers, W. 2D fast rotational matching for image processing of biophysical data. J Struct Biol, 2003, 144, 51-60 == Abstract == I...") (current)
- 10:10, 28 December 2015 (diff | hist) . . (+173) . . Main Page (→2D Alignment)
- 11:57, 23 December 2015 (diff | hist) . . (+1,730) . . N 2015Ding CaltechTomography (Created page with "== Citation == Ding, H. J.; Oikonomou, C. M. & Jensen, G. J. The Caltech Tomography Database and Automatic Processing Pipeline. J Struct Biol, 2015, 192, 279-286 == Abstract...") (current)
- 11:55, 23 December 2015 (diff | hist) . . (+76) . . Main Page (→Software)
- 11:51, 23 December 2015 (diff | hist) . . (+1,159) . . N 2015Noble AppionProtomo (Created page with "== Citation == Noble, A. J. & Stagg, S. M. Automated batch fiducial-less tilt-series alignment in Appion using Protomo. J Struct Biol, 2015, 192, 270-278 == Abstract == The...") (current)
- 11:50, 23 December 2015 (diff | hist) . . (+111) . . Main Page (→Software)
- 14:13, 23 November 2015 (diff | hist) . . (+1,892) . . N 2015Wriggers Secondary (Created page with "== Citation == Wriggers, W. & He, J. Numerical geometry of map and model assessment. J Struct Biol, 2015, 192, 255-261 == Abstract == We are describing best practices and a...") (current)
- 14:12, 23 November 2015 (diff | hist) . . (+78) . . Main Page (→Validation)
- 14:03, 23 November 2015 (diff | hist) . . (+1,361) . . N 2015Zhang seam (Created page with "== Citation == Zhang, R. & Nogales, E. A new protocol to accurately determine microtubule lattice seam location. J Struct Biol, 2015, 192, 245-254 == Abstract == Microtubul...") (current)
- 14:02, 23 November 2015 (diff | hist) . . (+83) . . Main Page (→Reconstruction)
- 12:29, 23 November 2015 (diff | hist) . . (+1,869) . . N 2015Oliveira FreqLimited (Created page with "== Citation == Oliveira Passos, D. & Lyumkis, D. Single-particle cryoEM analysis at near-atomic resolution from several thousand asymmetric subunits. J Struct Biol, 2015, 192...") (current)
- 12:28, 23 November 2015 (diff | hist) . . (+109) . . Main Page (→Validation)
- 12:11, 23 November 2015 (diff | hist) . . (+1,094) . . N 2015Rohou CTFFind4 (Created page with "== Citation == Rohou, A. & Grigorieff, N. CTFFIND4: Fast and accurate defocus estimation from electron micrographs. J Struct Biol, 2015, 192, 216-221 == Abstract == CTFFIND...") (current)
- 12:03, 23 November 2015 (diff | hist) . . (+51) . . Main Page (→CTF estimation and restoration)
- 11:43, 23 November 2015 (diff | hist) . . (+1,674) . . N 2015Spear DoseCompensation (Created page with "== Citation == Spear, J. M.; Noble, A. J.; Xie, Q.; Sousa, D. R.; Chapman, M. S. & Stagg, S. M. The influence of frame alignment with dose compensation on the quality of sing...") (current)
- 11:42, 23 November 2015 (diff | hist) . . (+90) . . Main Page (→2D Preprocessing)
- 15:10, 19 November 2015 (diff | hist) . . (+1,388) . . N 2015Kuijper FEI (Created page with "== Citation == Kuijper, M.; van Hoften, G.; Janssen, B.; Geurink, R.; De Carlo, S.; Vos, M.; van Duinen, G.; van Haeringen, B. & Storms, M. FEI's direct electron detector dev...") (current)
- 15:09, 19 November 2015 (diff | hist) . . (+68) . . Main Page (→Image formation)
- 14:46, 19 November 2015 (diff | hist) . . (+1,359) . . N 2015Li UCSFImage (Created page with "== Citation == Li, X.; Zheng, S.; Agard, D. A. & Cheng, Y. Asynchronous data acquisition and on-the-fly analysis of dose fractionated cryoEM images by UCSFImage. J Struct Bio...") (current)
- 14:44, 19 November 2015 (diff | hist) . . (+75) . . Main Page (→Automated data collection)
- 14:31, 19 November 2015 (diff | hist) . . (+1,400) . . N 2015Cheng MRC2014 (Created page with "== Citation == Cheng, A.; Henderson, R.; Mastronarde, D.; Ludtke, S. J.; Schoenmakers, R. H. M.; Short, J.; Marabini, R.; Dallakyan, S.; Agard, D. & Winn, M. MRC2014: Extensi...") (current)
- 14:30, 19 November 2015 (diff | hist) . . (+69) . . Main Page (→Software)
- 14:17, 19 November 2015 (diff | hist) . . (+1,028) . . N 2015Chiu K2 (Created page with "== Citation == Chiu, P.-L.; Li, X.; Li, Z.; Beckett, B.; Brilot, A. F.; Grigorieff, N.; Agard, D. A.; Cheng, Y. & Walz, T. Evaluation of super-resolution performance of the K...") (current)
- 14:16, 19 November 2015 (diff | hist) . . (+56) . . Main Page (→Image formation)
- 14:08, 19 November 2015 (diff | hist) . . (+1,778) . . N 2015Yu ReferenceBias (Created page with "== Citation == Kunz, M.; Yu, Z. & Frangakis, A. S. M-free: Mask-independent scoring of the reference bias. J Struct Biol, 2015, 192, 307-311 == Abstract == The M-free score...") (current)
- 14:07, 19 November 2015 (diff | hist) . . (+68) . . Main Page (→Subtomogram analysis)
- 13:50, 19 November 2015 (diff | hist) . . (+4) . . Main Page (→Electron tomography)
- 13:50, 19 November 2015 (diff | hist) . . (+2,151) . . N 2015Yan thickness (Created page with "== Citation == Yan, R.; Edwards, T. J.; Pankratz, L. M.; Kuhn, R. J.; Lanman, J. K.; Liu, J. & Jiang, W. Simultaneous determination of sample thickness, tilt, and electron me...") (current)
- 13:48, 19 November 2015 (diff | hist) . . (+133) . . Main Page (→Electron tomography)
- 10:08, 5 November 2015 (diff | hist) . . (+1,527) . . N 2005Steven Review (Created page with "== Citation == Steven, A. & Belnap, D. Electron microscopy and image processing: an essential tool for structural analysis of macromolecules. Curr Protoc Protein Sci, 2005, C...") (current)
- 10:08, 5 November 2015 (diff | hist) . . (+69) . . Main Page (→Books and reviews)
- 11:37, 30 October 2015 (diff | hist) . . (+2,205) . . N 2015Bettadapura PF2Fit (Created page with "== Citation == Bettadapura, R.; Rasheed, M.; Vollrath, A. & Bajaj, C. PF2fit: Polar Fast Fourier Matched Alignment of Atomistic Structures with 3D Electron Microscopy Maps. P...") (current)
- 11:34, 30 October 2015 (diff | hist) . . (+84) . . Main Page (→Fitting and docking)
- 13:50, 13 October 2015 (diff | hist) . . (+1,918) . . N 2015Zhao AnisotropicMagnification (Created page with "== Citation == Zhao, J.; Brubaker, M. A.; Benlekbir, S. & Rubinstein, J. L. Description and comparison of algorithms for correcting anisotropic magnification in cryo-EM images...") (current)
- 13:49, 13 October 2015 (diff | hist) . . (+95) . . Main Page (→2D Preprocessing)
- 15:57, 9 October 2015 (diff | hist) . . (+1,900) . . N 2015McMullan AmorphousIce (Created page with "== Citation == McMullan, G.; Vinothkumar, K. R. & Henderson, R. Thon rings from amorphous ice and implications of beam-induced Brownian motion in single particle electron cry...") (current)
- 15:54, 9 October 2015 (diff | hist) . . (+97) . . Main Page (→Image formation)
- 15:59, 8 October 2015 (diff | hist) . . (+1,086) . . N 2015Hawkes AberrationCorrection (Created page with "== Citation == Hawkes, P. W. The correction of electron lens aberrations. Ultramicroscopy, 2015, 156, A1-A64 == Abstract == The progress of electron lens aberration correct...") (current)
- 15:59, 8 October 2015 (diff | hist) . . (+112) . . Main Page (→Image formation)
- 15:47, 30 September 2015 (diff | hist) . . (+936) . . N 2015Barad EMRinger (Created page with "== Citation == Barad, B. A.; Echols, N.; Wang, R. Y.-R.; Cheng, Y.; DiMaio, F.; Adams, P. D. & Fraser, J. S. EMRinger: side chain-directed model and map validation for 3D cry...") (current)
- 15:46, 30 September 2015 (diff | hist) . . (+68) . . Main Page (→Fitting and docking)
- 15:23, 30 September 2015 (diff | hist) . . (+1,541) . . N 2015Bharat CTFCorrectedSubtomogramAveraging (Created page with "== Citation == Bharat, T. A. M.; Russo, C. J.; Löwe, J.; Passmore, L. A. & Scheres, S. H. W. Advances in Single-Particle Electron Cryomicroscopy Structure Determination appl...") (current)
- 15:22, 30 September 2015 (diff | hist) . . (+109) . . Main Page (→Single particle tomography)
- 15:21, 30 September 2015 (diff | hist) . . (-109) . . Main Page (→Software)
- 15:21, 30 September 2015 (diff | hist) . . (+130) . . Main Page (→Subtomogram analysis)
- 15:21, 30 September 2015 (diff | hist) . . (+130) . . Main Page (→CTF estimation and restoration)
- 15:16, 30 September 2015 (diff | hist) . . (+1,698) . . N 2015Galaz SingleParticleTomography (Created page with "== Citation == Galaz-Montoya, J. G.; Flanagan, J.; Schmid, M. F. & Ludtke, S. J. Single particle tomography in EMAN2. J. Structural Biology, 2015, 190, 279-290 == Abstract =...") (current)
- 15:13, 30 September 2015 (diff | hist) . . (+109) . . Main Page (→Software)
- 13:37, 30 September 2015 (diff | hist) . . (+1,144) . . N 2015Elmlund Review (Created page with "== Citation == Elmlund, D. & Elmlund, H. Cryogenic electron microscopy and single-particle analysis. Annu Rev Biochem, 2015, 84, 499-517 == Abstract == About 20 years ago, ...") (current)
- 13:36, 30 September 2015 (diff | hist) . . (+67) . . Main Page (→Books and reviews)
- 21:12, 25 September 2015 (diff | hist) . . (+953) . . N 2015Henderson Review (Created page with "== Citation == Henderson, R. Overview and future of single particle electron cryomicroscopy. Arch Biochem Biophys, 2015, 581, 19-24 == Abstract == Electron cryomicroscopy (...") (current)
- 21:10, 25 September 2015 (diff | hist) . . (+11) . . 2015Schroeder Review (→Citation) (current)
- 21:09, 25 September 2015 (diff | hist) . . (+69) . . Main Page (→Books and reviews)
- 21:08, 25 September 2015 (diff | hist) . . (+1,434) . . N 2015Schroeder Review (Created page with "== Citation == Schröder, R. R. Advances in electron microscopy: A qualitative view of instrumentation development for macromolecuar imaging and tomography. Archives of Bioch...")
- 20:55, 25 September 2015 (diff | hist) . . (+88) . . Main Page (→Books and reviews)
- 08:34, 25 September 2015 (diff | hist) . . (+1,655) . . N 2015Carazo Review (Created page with "== Citation == Carazo, J. M.; Sorzano, C. O. S.; Otón, J.; Marabini, R. & Vargas, J. Three-dimensional reconstruction methods in Single Particle Analysis from transmission e...") (current)
- 08:31, 25 September 2015 (diff | hist) . . (+76) . . Main Page (→Books and reviews)
- 08:22, 25 September 2015 (diff | hist) . . (+1,084) . . N 2015Cheng Review (Created page with "== Citation == Cheng, Y.; Grigorieff, N.; Penczek, P. A. & Walz, T. A primer to single-particle cryo-electron microscopy. Cell, 2015, 161, 438-449 == Abstract == Cryo-elect...") (current)
- 08:21, 25 September 2015 (diff | hist) . . (+74) . . Main Page (→Books and reviews)
- 08:46, 25 August 2015 (diff | hist) . . (+1,962) . . N 2012Sindelar NoiseReduction (Created page with "== Citation == Sindelar, C. V. & Grigorieff, N. Optimal noise reduction in 3D reconstructions of single particles using a volume-normalized filter. J. Structural Biology, 201...") (current)
- 08:44, 25 August 2015 (diff | hist) . . (+95) . . Main Page (→3D Reconstruction)
- 06:40, 7 August 2015 (diff | hist) . . (+1,920) . . N 2015Abrishami Fourier (Created page with "== Citation == Abrishami, V.; Bilbao-Castro, J. R.; Vargas, J.; Marabini, R.; Carazo, J. M. & Sorzano, C. O. S. A fast iterative convolution weighting approach for gridding-b...") (current)
- 06:38, 7 August 2015 (diff | hist) . . (+78) . . Main Page (→3D Reconstruction)
- 06:51, 31 July 2015 (diff | hist) . . (+1,538) . . N 2014Chen Autofocus (Created page with "== Citation == Chen, Y.; Pfeffer, S.; Fernández, J. J.; Sorzano, C. O. S. & Förster, F. Autofocused 3D classification of cryoelectron subtomograms. Structure, 2014, 22, 152...") (current)
- 06:47, 31 July 2015 (diff | hist) . . (+118) . . Main Page (→Subtomogram analysis)
- 12:50, 28 July 2015 (diff | hist) . . (+1,844) . . N 2015Diebolder ConicalFSC (Created page with "== Citation == Diebolder, C. A.; Faas, F. G. A.; Koster, A. J. & Koning, R. I. Conical Fourier shell correlation applied to electron tomograms. J Struct Biol, 2015, 190, 215-...") (current)
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