User contributions
From 3DEM-Methods
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- 05:59, 15 June 2023 (diff | hist) . . (+1,703) . . N 2023Bendory Autocorrelation (Created page with "== Citation == Bendory, Tamir / Khoo, Yuehaw / Kileel, Joe / Mickelin, Oscar / Singer, Amit. Autocorrelation analysis for cryo-EM with sparsity constraints: Improved sample c...") (current)
- 05:55, 15 June 2023 (diff | hist) . . (+123) . . Main Page (→3D Reconstruction)
- 05:43, 15 June 2023 (diff | hist) . . (+1,814) . . N 2022Hohle Ice (Created page with "== Citation == Hohle, Markus Matthias / Lammens, Katja / Gut, Fabian / Wang, Bingzhi / Kahler, Sophia / Kugler, Kathrin / Till, Michael / Beckmann, Roland / Hopfner, Karl-Pet...") (current)
- 05:42, 15 June 2023 (diff | hist) . . (+83) . . Main Page (→Automated data collection)
- 05:36, 15 June 2023 (diff | hist) . . (+1,674) . . N 2023Esteve Spectral (Created page with "== Citation == Esteve-Yagüe, Carlos / Diepeveen, Willem / Öktem, Ozan / Schönlieb, Carola-Bibiane Spectral decomposition of atomic structures in heterogeneous cryo-EM. 2...") (current)
- 05:35, 15 June 2023 (diff | hist) . . (+134) . . Main Page (→3D Heterogeneity)
- 08:44, 14 June 2023 (diff | hist) . . (+2,024) . . N 2022Wu Manifold (Created page with "== Citation == Wu, Zhaolong / Chen, Enbo / Zhang, Shuwen / Ma, Yinping / Mao, Youdong Visualizing conformational space of functional biomolecular complexes by deep manifold...") (current)
- 08:42, 14 June 2023 (diff | hist) . . (+88) . . Main Page (→3D Heterogeneity)
- 07:58, 14 June 2023 (diff | hist) . . (+1,541) . . N 2022Eldar ASOCEM (Created page with "== Citation == Eldar, Amitay / Amos, Ido / Shkolnisky, Yoel ASOCEM: Automatic Segmentation Of Contaminations in cryo-EM 2022. Journal of Structural Biology, Vol. 214, No. 3...") (current)
- 07:57, 14 June 2023 (diff | hist) . . (+79) . . Main Page (→Automatic particle picking)
- 06:44, 12 June 2023 (diff | hist) . . (+3,003) . . N 2022Jimenez ScipionTomo (Created page with "== Citation == Jiménez de la Morena, J. / Conesa, P. / Fonseca, Y. C. / de Isidro-Gómez, F. P. / Herreros, D. / Fernández-Giménez, E. / Strelak, D. / Moebel, E. / Buchhol...") (current)
- 06:43, 12 June 2023 (diff | hist) . . (+81) . . Main Page (→Software)
- 06:40, 12 June 2023 (diff | hist) . . (+1,748) . . N 2022Fluty Precision (Created page with "== Citation == Fluty, Adam C. / Ludtke, Steven J. Precision requirements and data compression in CryoEM/CryoET. 2022. Journal of Structural Biology, Vol. 214, No. 3, p. 10787...") (current)
- 06:40, 12 June 2023 (diff | hist) . . (+85) . . Main Page (→Software)
- 06:36, 12 June 2023 (diff | hist) . . (+1,438) . . N 2022Russo Review (Created page with "== Citation == Russo, Christopher J. / Dickerson, Joshua L. / Naydenova, Katerina Cryomicroscopy in situ: what is the smallest molecule that can be directly identified witho...") (current)
- 06:35, 12 June 2023 (diff | hist) . . (+73) . . Main Page (→Sample preparation)
- 18:33, 7 June 2023 (diff | hist) . . (+1,515) . . N 2022Terashi DAQ (Created page with "== Citation == Terashi, Genki / Wang, Xiao / Maddhuri Venkata Subramaniya, Sai Raghavendra / Tesmer, John J. G. / Kihara, Daisuke Residue-wise local quality estimation for p...") (current)
- 18:32, 7 June 2023 (diff | hist) . . (+82) . . Main Page (→Validation)
- 08:33, 24 January 2023 (diff | hist) . . (+1,538) . . N 2022He EMBuild (Created page with "== Citation == He, Jiahua / Lin, Peicong / Chen, Ji / Cao, Hong / Huang, Sheng-You. Model building of protein complexes from intermediate-resolution cryo-EM maps with deep le...") (current)
- 08:32, 24 January 2023 (diff | hist) . . (+80) . . Main Page (→Fitting and docking)
- 08:23, 24 January 2023 (diff | hist) . . (+2,054) . . N 2022Kulik TAAM (Created page with "== Citation == Kulik, Marta / Chodkiewicz, Michał Leszek / Dominiak, Paulina Maria. Theoretical 3D electron diffraction electrostatic potential maps of proteins modeled with...") (current)
- 08:22, 24 January 2023 (diff | hist) . . (+113) . . Main Page (→Image formation)
- 08:34, 23 January 2023 (diff | hist) . . (+1,701) . . N 2022Moebel unsupervised (Created page with "== Citation == Moebel, E. / Kervrann, C. Towards unsupervised classification of macromolecular complexes in cryo electron tomography: Challenges and opportunities, 2022, Com...") (current)
- 08:33, 23 January 2023 (diff | hist) . . (+110) . . Main Page (→Subtomogram analysis)
- 08:26, 23 January 2023 (diff | hist) . . (+2,757) . . N 2022Lamm MemBrain (Created page with "== Citation == Lamm, L. / Righetto, R. D. / Wietrzynski, W. / Pöge, M. / Martinez-Sanchez, A. / Peng, T. / Engel, B. MemBrain: A deep learning-aided pipeline for detection o...") (current)
- 08:24, 23 January 2023 (diff | hist) . . (+81) . . Main Page (→Segmentation)
- 07:58, 20 January 2023 (diff | hist) . . (+2,647) . . N 2022Hao Picking (Created page with "== Citation == Hao, Yu / Wan, Xiaohua / Yan, Rui / Liu, Zhiyong / Li, Jintao / Zhang, Shihua / Cui, Xuefeng / Zhang, Fa. VP-Detector: A 3D multi-scale dense convolutional neu...") (current)
- 07:57, 20 January 2023 (diff | hist) . . (+72) . . Main Page (→Subtomogram analysis)
- 09:56, 16 January 2023 (diff | hist) . . (+2,208) . . N 2022Martinez PyOrg (Created page with "== Citation == Martinez-Sanchez, Antonio / Baumeister, Wolfgang / Lučić, Vladan. Statistical spatial analysis for cryo-electron tomography, 2022, Computer Methods and Progr...") (current)
- 09:55, 16 January 2023 (diff | hist) . . (+92) . . Main Page (→Software)
- 09:49, 16 January 2023 (diff | hist) . . (+2,165) . . N 2022Shi Denoising (Created page with "== Citation == Shi, Y. / Singer, A. Ab-initio contrast estimation and denoising of cryo-EM images. 2022, Computer Methods and Programs in Biomedicine, Vol. 224: p. 107018 =...") (current)
- 09:02, 16 January 2023 (diff | hist) . . (+79) . . Main Page (→2D Preprocessing)
- 09:03, 10 January 2023 (diff | hist) . . (+1,800) . . N 2022Gilles Wilson (Created page with "== Citation == Gilles, Marc Aurèle / Singer, Amit. A molecular prior distribution for Bayesian inference based on Wilson statistics. 2022. Computer Methods and Programs in B...") (current)
- 09:02, 10 January 2023 (diff | hist) . . (+120) . . Main Page (→Sharpening of high resolution information)
- 08:48, 10 January 2023 (diff | hist) . . (+2,641) . . N 2022Heymann PSSNR (Created page with "== Citation == Heymann, J. Bernard. The progressive spectral signal-to-noise ratio of cryo-electron micrograph movies as a tool to assess quality and radiation damage. 2022,...") (current)
- 08:39, 10 January 2023 (diff | hist) . . (+121) . . Main Page (→Image formation)
- 07:51, 14 December 2022 (diff | hist) . . (+2,476) . . N 2022Westbrook mmCIF (Created page with "== Citation == Westbrook, John D. / Young, Jasmine Y. / Shao, Chenghua / Feng, Zukang / Guranovic, Vladimir / Lawson, Catherine L. / Vallat, Brinda / Adams, Paul D. / Berrisf...") (current)
- 07:48, 14 December 2022 (diff | hist) . . (+62) . . Main Page (→Databases)
- 07:17, 12 December 2022 (diff | hist) . . (-90) . . Main Page (→Sample preparation)
- 07:11, 12 December 2022 (diff | hist) . . (+90) . . Main Page (→Sample preparation)
- 06:54, 2 December 2022 (diff | hist) . . (+4) . . Main Page (→Online courses and Learning material)
- 06:52, 2 December 2022 (diff | hist) . . (+54) . . Main Page (→Online courses and Learning material)
- 08:23, 23 November 2022 (diff | hist) . . (+1,372) . . N 2022Hryc Pathwalking (Created page with "== Citation == Hryc, Corey F. / Baker, Matthew L. Beyond the Backbone: The Next Generation of Pathwalking Utilities for Model Building in CryoEM Density Maps. 2022, Biomolecu...") (current)
- 08:22, 23 November 2022 (diff | hist) . . (+75) . . Main Page (→Fitting and docking)
- 08:11, 23 November 2022 (diff | hist) . . (+1,418) . . N 2022Hagen Screening (Created page with "== Citation == Hagen, Wim J. H. Light ‘Em up: Efficient Screening of Gold Foil Grids in Cryo-EM. 2022, Frontiers in Molecular Biosciences, Vol. 9, p. 912363 == Abstract ==...") (current)
- 08:10, 23 November 2022 (diff | hist) . . (+110) . . Main Page (→Automated data collection)
- 07:51, 23 November 2022 (diff | hist) . . (+1,748) . . N 2022Flutty bits (Created page with "== Citation == Fluty, Adam C. / Ludtke, Steven J. Precision requirements and data compression in CryoEM/CryoET. 2022, Journal of Structural Biology, Vol. 214, No. 3, p. 10787...") (current)
- 07:50, 23 November 2022 (diff | hist) . . (+66) . . Main Page (→Automated data collection)
- 07:24, 21 November 2022 (diff | hist) . . (+1,919) . . N 2022Liu Review (Created page with "== Citation == Liu, H.-F. / Zhou, Ye / Bartesaghi, Alberto. High-resolution structure determination using high-throughput electron cryo-tomography, 2022, Acta Crystallographi...") (current)
- 07:18, 21 November 2022 (diff | hist) . . (+89) . . Main Page (→Books and reviews)
- 14:55, 9 June 2022 (diff | hist) . . (+2,127) . . N 2022Sorzano 1000 (Created page with "== Citation == Sorzano, C. O. S. / Carazo, J. M. Cryo-Electron Microscopy: The field of 1,000^+ methods. 2022. Journal of structural biology, Vol. 214, p. 107861 == Abstract...") (current)
- 14:53, 9 June 2022 (diff | hist) . . (+74) . . Main Page (→Books and reviews)
- 14:49, 9 June 2022 (diff | hist) . . (+2,364) . . N 2022DiIorio Multiple (Created page with "== Citation == DiIorio, Megan C. / Kulczyk, Arkadiusz W. A Robust Single-Particle Cryo-Electron Microscopy (cryo-EM) Processing Workflow with cryoSPARC, RELION, and Scipion....") (current)
- 14:47, 9 June 2022 (diff | hist) . . (+159) . . Main Page (→Software)
- 14:43, 9 June 2022 (diff | hist) . . (+1,342) . . N 2022Waarshamanage EMDA (Created page with "== Citation == Warshamanage, Rangana / Yamashita, Keitaro / Murshudov, Garib N. EMDA: A Python package for Electron Microscopy Data Analysis. 2022. Journal of structural biol...") (current)
- 14:42, 9 June 2022 (diff | hist) . . (+89) . . Main Page (→Validation)
- 14:39, 9 June 2022 (diff | hist) . . (-2) . . 2022Frangakis Curvature (→Abstract) (current)
- 14:38, 9 June 2022 (diff | hist) . . (+1,510) . . N 2022Frangakis Curvature (Created page with "== Citation == Frangakis, Achilleas S. Mean curvature motion facilitates the segmentation and surface visualization of electron tomograms. 2022. Journal of structural biology...")
- 14:37, 9 June 2022 (diff | hist) . . (+115) . . Main Page (→Segmentation)
- 14:33, 9 June 2022 (diff | hist) . . (+1,894) . . N 2022Levitz Chameleon (Created page with "== Citation == Levitz, Talya S. / Brignole, Edward J. / Fong, Ivan / Darrow, Michele C. / Drennan, Catherine L. Effects of chameleon dispense-to-plunge speed on particle conc...") (current)
- 14:31, 9 June 2022 (diff | hist) . . (+144) . . Main Page (→Sample preparation)
- 14:27, 9 June 2022 (diff | hist) . . (+1,454) . . N 2022Zhu ElectronCounting (Created page with "== Citation == Zhu, Dongjie / Shi, Huigang / Wu, Chunling / Zhang, Xinzheng. An electron counting algorithm improves imaging of proteins with low-acceleration-voltage cryo-el...") (current)
- 14:25, 9 June 2022 (diff | hist) . . (+100) . . Main Page (→Automated data collection)
- 14:18, 9 June 2022 (diff | hist) . . (+1,646) . . N 2022Zhang EPicker (Created page with "== Citation == Zhang, Xinyu / Zhao, Tianfang / Chen, Jiansheng / Shen, Yuan / Li, Xueming. EPicker is an exemplar-based continual learning approach for knowledge accumulation...") (current)
- 14:17, 9 June 2022 (diff | hist) . . (+84) . . Main Page (→Automatic particle picking)
- 14:14, 9 June 2022 (diff | hist) . . (+2,641) . . N 2022Heymann ProgressiveSSNR (Created page with "== Citation == Heymann, J. Bernard. The progressive spectral signal-to-noise ratio of cryo-electron micrograph movies as a tool to assess quality and radiation damage. 2022....") (current)
- 14:12, 9 June 2022 (diff | hist) . . (+105) . . Main Page (→2D Preprocessing)
- 14:04, 9 June 2022 (diff | hist) . . (+2,591) . . N 2022Wang EMDB (Created page with "== Citation == Wang, Zhe / Patwardhan, Ardan / Kleywegt, Gerard J. Validation analysis of EMDB entries. 2022. Acta crystallographica. Section D, Structural biology, Vol. 78,...") (current)
- 14:01, 9 June 2022 (diff | hist) . . (+71) . . Main Page (→Databases)
- 13:55, 9 June 2022 (diff | hist) . . (+1,522) . . N 2022Dickerson Inelastic (Created page with "== Citation == Dickerson, Joshua L. / Lu, Peng-Han / Hristov, Dilyan / Dunin-Borkowski, Rafal E. / Russo, Christopher J. Imaging biological macromolecules in thick specimens:...") (current)
- 13:54, 9 June 2022 (diff | hist) . . (+97) . . Main Page (→Image formation)
- 13:50, 9 June 2022 (diff | hist) . . (+1,695) . . N 2022Peck Montage (Created page with "== Citation == Peck, Ariana / Carter, Stephen D. / Mai, Huanghao / Chen, Songye / Burt, Alister / Jensen, Grant J. Montage electron tomography of vitrified specimens. 2022. J...") (current)
- 13:48, 9 June 2022 (diff | hist) . . (+66) . . Main Page (→Automated data collection)
- 13:43, 9 June 2022 (diff | hist) . . (+2,196) . . N 2022Zhou Data (Created page with "== Citation == Zhou, Ye / Moscovich, Amit / Bartesaghi, Alberto. Data-driven determination of number of discrete conformations in single-particle cryo-EM. 2022. Computer Meth...") (current)
- 13:41, 9 June 2022 (diff | hist) . . (+86) . . Main Page (→3D Heterogeneity)
- 13:27, 9 June 2022 (diff | hist) . . (+2,143) . . N 2022Wang Spectral (Created page with "== Citation == Wang, Xiangwen / Lu, Yonggang / Lin, Xianghong. Heterogeneous cryo-EM projection image classification using a two-stage spectral clustering based on novel dist...") (current)
- 13:25, 9 June 2022 (diff | hist) . . (+82) . . Main Page (→2D Classification and clustering)
- 12:24, 3 May 2022 (diff | hist) . . (+2,445) . . N 2022Behkamal LPTD (Created page with "== Citation == Behkamal, Bahareh / Naghibzadeh, Mahmoud / Pagnani, Andrea / Saberi, Mohammad Reza / Al Nasr, Kamal. LPTD: A Novel Linear Programming-based Topology Determinat...") (current)
- 12:22, 3 May 2022 (diff | hist) . . (+84) . . Main Page (→Fitting and docking)
- 12:18, 3 May 2022 (diff | hist) . . (+2,205) . . N 2020Yokoyama Good (Created page with "== Citation == Yokoyama, Yuichi / Terada, Tohru / Shimizu, Kentaro / Nishikawa, Kouki / Kozai, Daisuke / Shimada, Atsuhiro / Mizoguchi, Akira / Fujiyoshi, Yoshinori / Tani, K...") (current)
- 12:16, 3 May 2022 (diff | hist) . . (+93) . . Main Page (→Automated data collection)
- 12:12, 3 May 2022 (diff | hist) . . (+1,654) . . N 2022Lu SphericalEmbeddings (Created page with "== Citation == Lu, Yonggang / Liu, Jiaxuan / Zhu, Li / Zhang, Bianlan / He, Jing. 3D reconstruction from cryo-EM projection images using two spherical embeddings. 2022. Commu...") (current)
- 12:11, 3 May 2022 (diff | hist) . . (+113) . . Main Page (→3D Alignment)
- 12:04, 3 May 2022 (diff | hist) . . (+2,263) . . N 2022Peters Feature (Created page with "== Citation == Peters, John Jacob / Leitz, Jeremy / Guo, Qiang / Beck, Florian / Baumeister, Wolfgang / Brunger, Axel T. A feature-guided, focused 3D signal permutation metho...") (current)
- 12:03, 3 May 2022 (diff | hist) . . (+93) . . Main Page (→Subtomogram analysis)
- 11:56, 3 May 2022 (diff | hist) . . (+1,474) . . N 2022Neijenhuis Haddock (Created page with "== Citation == Neijenhuis, Tim / van Keulen, Siri C. / Bonvin, Alexandre M. J. J. Interface refinement of low- to medium-resolution Cryo-EM complexes using HADDOCK2.4. 2022....") (current)
- 11:55, 3 May 2022 (diff | hist) . . (+113) . . Main Page (→Fitting and docking)
- 11:48, 3 May 2022 (diff | hist) . . (+1,395) . . N 2021Kimanius Relion4 (Created page with "== Citation == Kimanius, Dari / Dong, Liyi / Sharov, Grigory / Nakane, Takanori / Scheres, Sjors H. W. New tools for automated cryo-EM single-particle analysis in RELION-4.0....") (current)
- 11:47, 3 May 2022 (diff | hist) . . (+64) . . Main Page (→Software)
- 11:42, 3 May 2022 (diff | hist) . . (+1,692) . . N 2022Skalidis Endogenous (Created page with "== Citation == <Skalidis, Ioannis / Kyrilis, Fotis L. / Tüting, Christian / Hamdi, Farzad / Chojnowski, Grzegorz / Kastritis, Panagiotis L. Cryo-EM and artificial intelligen...") (current)
- 11:41, 3 May 2022 (diff | hist) . . (+98) . . Main Page (→3D Heterogeneity)
- 11:31, 3 May 2022 (diff | hist) . . (+1,562) . . N 2022Rabuck Quant (Created page with "== Citation == Rabuck-Gibbons, Jessica N. / Lyumkis, Dmitry / Williamson, James R. Quantitative mining of compositional heterogeneity in cryo-EM datasets of ribosome assembly...") (current)
- 11:30, 3 May 2022 (diff | hist) . . (+83) . . Main Page (→3D Heterogeneity)
- 14:07, 19 April 2022 (diff | hist) . . (+89) . . Main Page (→Online courses and Learning material)
- 14:06, 19 April 2022 (diff | hist) . . (+120) . . Main Page (→Online courses and Learning material)
- 13:20, 13 April 2022 (diff | hist) . . (+2,079) . . N 2022Krieger Prody2 (Created page with "== Citation == Krieger, James Michael / Sorzano, Carlos Oscar S. / Carazo, Jose Maria / Bahar, Ivet. Protein dynamics developments for the large scale and cryoEM: case study...") (current)
- 13:15, 13 April 2022 (diff | hist) . . (+126) . . Main Page (→Fitting and docking)
- 13:11, 13 April 2022 (diff | hist) . . (+2,861) . . N 2022Sorzano Bias (Created page with "== Citation == Sorzano, C. O. S. / Jiménez-Moreno, A. / Maluenda, D. / Martinez, M. / Ramirez-Aportela, E. / Melero, R. / Cuervo, A. / Conesa, J. / Filipovic, J. / Conesa, P...") (current)
- 13:09, 13 April 2022 (diff | hist) . . (+91) . . Main Page (→Validation)
- 12:55, 13 April 2022 (diff | hist) . . (+1,563) . . N 2022Vant MD (Created page with "== Citation == Vant, John W. / Sarkar, Daipayan / Nguyen, Jonathan / Baker, Alexander T. / Vermaas, Josh V. / Singharoy, Abhishek. Exploring cryo-electron microscopy with mol...") (current)
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