User contributions
From 3DEM-Methods
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- 09:00, 28 June 2023 (diff | hist) . . (+90) . . Main Page (→Fitting and docking)
- 08:35, 28 June 2023 (diff | hist) . . (+1,855) . . N 2022Beton Fitting (Created page with "== Citation == Beton, Joseph George / Cragnolini, Tristan / Kaleel, Manaz / Mulvaney, Thomas / Sweeney, Aaron / Topf, Maya. Integrating model simulation tools and cryo-electr...") (current)
- 08:34, 28 June 2023 (diff | hist) . . (+63) . . Main Page (→Books and reviews)
- 07:37, 28 June 2023 (diff | hist) . . (+1,690) . . N 2023Heymann Ewald (Created page with "== Citation == Heymann, J. Bernard. The Ewald sphere/focus gradient does not limit the resolution of cryoEM reconstructions. 2023. J. Structural Biology: X, Vol. 7, p. 100083...") (current)
- 07:36, 28 June 2023 (diff | hist) . . (+127) . . Main Page (→Image formation)
- 07:17, 28 June 2023 (diff | hist) . . (+1,783) . . N 2022Sorzano Validation (Created page with "== Citation == Sorzano, C. O. S. / Vilas, J. L. / Ram\irez-Aportela, Erney / Krieger, J. / Del Hoyo, D. / de Isidro-Gómez, F. / Herreros, David / Fernandez-Giménez, Estrell...") (current)
- 07:08, 28 June 2023 (diff | hist) . . (+81) . . Main Page (→Validation)
- 09:10, 26 June 2023 (diff | hist) . . (+1,649) . . N 2022Liu Isonet (Created page with "== Citation == Liu, Yun-Tao / Zhang, Heng / Wang, Hui / Tao, Chang-Lu / Bi, Guo-Qiang / Zhou, Z. Hong. Isotropic reconstruction for electron tomography with deep learning. 20...") (current)
- 09:10, 26 June 2023 (diff | hist) . . (+82) . . Main Page (→Noise reduction)
- 08:47, 26 June 2023 (diff | hist) . . (+1,240) . . N 2022Urzhumtsev XrayEM (Created page with "== Citation == Urzhumtsev, Alexandre / Lunin, Vladimir Y. Analytic modeling of inhomogeneous-resolution maps in cryo-electron microscopy and crystallography. 2022. IUCrJ, Vol...") (current)
- 08:32, 26 June 2023 (diff | hist) . . (+97) . . Main Page (→Fitting and docking)
- 13:06, 23 June 2023 (diff | hist) . . (+1,065) . . N 2022Bepler Smart (Created page with "== Citation == Bepler, Tristan / Borst, Andrew J. / Bouvette, Jonathan / Cannone, Giuseppe / Chen, Songye / Cheng, Anchi / Cheng, Ao / Fan, Quanfu / Grollios, Fanis / Gupta,...") (current)
- 13:02, 23 June 2023 (diff | hist) . . (+60) . . Main Page (→Automated data collection)
- 09:34, 23 June 2023 (diff | hist) . . (+1,454) . . N 2023Marshall PCA (Created page with "== Citation == Marshall, Nicholas F. / Mickelin, Oscar / Shi, Yunpeng / Singer, Amit. Fast principal component analysis for cryo-electron microscopy images. 2023. Biological...") (current)
- 09:34, 23 June 2023 (diff | hist) . . (+73) . . Main Page (→2D Preprocessing)
- 08:44, 23 June 2023 (diff | hist) . . (+1,736) . . N 2022Garcia DeepHand (Created page with "== Citation == Garcia Condado, J. / Muñoz-Barrutia, A. / Sorzano, C. O. S. Automatic determination of the handedness of Single-Particle maps of macromolecules solved by Cryo...") (current)
- 08:35, 23 June 2023 (diff | hist) . . (+95) . . Main Page (→Validation)
- 08:15, 23 June 2023 (diff | hist) . . (+1,367) . . N 2022Havelkova regularization (Created page with "== Citation == Havelková, Eva / Hnětynková, Iveta. Iterative hybrid regularization for extremely noisy full models in single particle analysis. 2023. Linear Algebra and it...") (current)
- 08:13, 23 June 2023 (diff | hist) . . (+104) . . Main Page (→3D Reconstruction)
- 09:21, 16 June 2023 (diff | hist) . . (+1,686) . . N 2022Levy CryoFire (Created page with "== Citation == Levy, Axel / Wetzstein, Gordon / Martel, Julien N. P. / Poitevin, Frederic / Zhong, Ellen Amortized Inference for Heterogeneous Reconstruction in Cryo-EM 202...") (current)
- 09:21, 16 June 2023 (diff | hist) . . (+110) . . Main Page (→3D Heterogeneity)
- 05:59, 15 June 2023 (diff | hist) . . (+1,703) . . N 2023Bendory Autocorrelation (Created page with "== Citation == Bendory, Tamir / Khoo, Yuehaw / Kileel, Joe / Mickelin, Oscar / Singer, Amit. Autocorrelation analysis for cryo-EM with sparsity constraints: Improved sample c...") (current)
- 05:55, 15 June 2023 (diff | hist) . . (+123) . . Main Page (→3D Reconstruction)
- 05:43, 15 June 2023 (diff | hist) . . (+1,814) . . N 2022Hohle Ice (Created page with "== Citation == Hohle, Markus Matthias / Lammens, Katja / Gut, Fabian / Wang, Bingzhi / Kahler, Sophia / Kugler, Kathrin / Till, Michael / Beckmann, Roland / Hopfner, Karl-Pet...") (current)
- 05:42, 15 June 2023 (diff | hist) . . (+83) . . Main Page (→Automated data collection)
- 05:36, 15 June 2023 (diff | hist) . . (+1,674) . . N 2023Esteve Spectral (Created page with "== Citation == Esteve-Yagüe, Carlos / Diepeveen, Willem / Öktem, Ozan / Schönlieb, Carola-Bibiane Spectral decomposition of atomic structures in heterogeneous cryo-EM. 2...") (current)
- 05:35, 15 June 2023 (diff | hist) . . (+134) . . Main Page (→3D Heterogeneity)
- 08:44, 14 June 2023 (diff | hist) . . (+2,024) . . N 2022Wu Manifold (Created page with "== Citation == Wu, Zhaolong / Chen, Enbo / Zhang, Shuwen / Ma, Yinping / Mao, Youdong Visualizing conformational space of functional biomolecular complexes by deep manifold...") (current)
- 08:42, 14 June 2023 (diff | hist) . . (+88) . . Main Page (→3D Heterogeneity)
- 07:58, 14 June 2023 (diff | hist) . . (+1,541) . . N 2022Eldar ASOCEM (Created page with "== Citation == Eldar, Amitay / Amos, Ido / Shkolnisky, Yoel ASOCEM: Automatic Segmentation Of Contaminations in cryo-EM 2022. Journal of Structural Biology, Vol. 214, No. 3...") (current)
- 07:57, 14 June 2023 (diff | hist) . . (+79) . . Main Page (→Automatic particle picking)
- 06:44, 12 June 2023 (diff | hist) . . (+3,003) . . N 2022Jimenez ScipionTomo (Created page with "== Citation == Jiménez de la Morena, J. / Conesa, P. / Fonseca, Y. C. / de Isidro-Gómez, F. P. / Herreros, D. / Fernández-Giménez, E. / Strelak, D. / Moebel, E. / Buchhol...") (current)
- 06:43, 12 June 2023 (diff | hist) . . (+81) . . Main Page (→Software)
- 06:40, 12 June 2023 (diff | hist) . . (+1,748) . . N 2022Fluty Precision (Created page with "== Citation == Fluty, Adam C. / Ludtke, Steven J. Precision requirements and data compression in CryoEM/CryoET. 2022. Journal of Structural Biology, Vol. 214, No. 3, p. 10787...") (current)
- 06:40, 12 June 2023 (diff | hist) . . (+85) . . Main Page (→Software)
- 06:36, 12 June 2023 (diff | hist) . . (+1,438) . . N 2022Russo Review (Created page with "== Citation == Russo, Christopher J. / Dickerson, Joshua L. / Naydenova, Katerina Cryomicroscopy in situ: what is the smallest molecule that can be directly identified witho...") (current)
- 06:35, 12 June 2023 (diff | hist) . . (+73) . . Main Page (→Sample preparation)
- 18:33, 7 June 2023 (diff | hist) . . (+1,515) . . N 2022Terashi DAQ (Created page with "== Citation == Terashi, Genki / Wang, Xiao / Maddhuri Venkata Subramaniya, Sai Raghavendra / Tesmer, John J. G. / Kihara, Daisuke Residue-wise local quality estimation for p...") (current)
- 18:32, 7 June 2023 (diff | hist) . . (+82) . . Main Page (→Validation)
- 08:33, 24 January 2023 (diff | hist) . . (+1,538) . . N 2022He EMBuild (Created page with "== Citation == He, Jiahua / Lin, Peicong / Chen, Ji / Cao, Hong / Huang, Sheng-You. Model building of protein complexes from intermediate-resolution cryo-EM maps with deep le...") (current)
- 08:32, 24 January 2023 (diff | hist) . . (+80) . . Main Page (→Fitting and docking)
- 08:23, 24 January 2023 (diff | hist) . . (+2,054) . . N 2022Kulik TAAM (Created page with "== Citation == Kulik, Marta / Chodkiewicz, Michał Leszek / Dominiak, Paulina Maria. Theoretical 3D electron diffraction electrostatic potential maps of proteins modeled with...") (current)
- 08:22, 24 January 2023 (diff | hist) . . (+113) . . Main Page (→Image formation)
- 08:34, 23 January 2023 (diff | hist) . . (+1,701) . . N 2022Moebel unsupervised (Created page with "== Citation == Moebel, E. / Kervrann, C. Towards unsupervised classification of macromolecular complexes in cryo electron tomography: Challenges and opportunities, 2022, Com...") (current)
- 08:33, 23 January 2023 (diff | hist) . . (+110) . . Main Page (→Subtomogram analysis)
- 08:26, 23 January 2023 (diff | hist) . . (+2,757) . . N 2022Lamm MemBrain (Created page with "== Citation == Lamm, L. / Righetto, R. D. / Wietrzynski, W. / Pöge, M. / Martinez-Sanchez, A. / Peng, T. / Engel, B. MemBrain: A deep learning-aided pipeline for detection o...") (current)
- 08:24, 23 January 2023 (diff | hist) . . (+81) . . Main Page (→Segmentation)
- 07:58, 20 January 2023 (diff | hist) . . (+2,647) . . N 2022Hao Picking (Created page with "== Citation == Hao, Yu / Wan, Xiaohua / Yan, Rui / Liu, Zhiyong / Li, Jintao / Zhang, Shihua / Cui, Xuefeng / Zhang, Fa. VP-Detector: A 3D multi-scale dense convolutional neu...") (current)
- 07:57, 20 January 2023 (diff | hist) . . (+72) . . Main Page (→Subtomogram analysis)
- 09:56, 16 January 2023 (diff | hist) . . (+2,208) . . N 2022Martinez PyOrg (Created page with "== Citation == Martinez-Sanchez, Antonio / Baumeister, Wolfgang / Lučić, Vladan. Statistical spatial analysis for cryo-electron tomography, 2022, Computer Methods and Progr...") (current)
- 09:55, 16 January 2023 (diff | hist) . . (+92) . . Main Page (→Software)
- 09:49, 16 January 2023 (diff | hist) . . (+2,165) . . N 2022Shi Denoising (Created page with "== Citation == Shi, Y. / Singer, A. Ab-initio contrast estimation and denoising of cryo-EM images. 2022, Computer Methods and Programs in Biomedicine, Vol. 224: p. 107018 =...") (current)
- 09:02, 16 January 2023 (diff | hist) . . (+79) . . Main Page (→2D Preprocessing)
- 09:03, 10 January 2023 (diff | hist) . . (+1,800) . . N 2022Gilles Wilson (Created page with "== Citation == Gilles, Marc Aurèle / Singer, Amit. A molecular prior distribution for Bayesian inference based on Wilson statistics. 2022. Computer Methods and Programs in B...") (current)
- 09:02, 10 January 2023 (diff | hist) . . (+120) . . Main Page (→Sharpening of high resolution information)
- 08:48, 10 January 2023 (diff | hist) . . (+2,641) . . N 2022Heymann PSSNR (Created page with "== Citation == Heymann, J. Bernard. The progressive spectral signal-to-noise ratio of cryo-electron micrograph movies as a tool to assess quality and radiation damage. 2022,...") (current)
- 08:39, 10 January 2023 (diff | hist) . . (+121) . . Main Page (→Image formation)
- 07:51, 14 December 2022 (diff | hist) . . (+2,476) . . N 2022Westbrook mmCIF (Created page with "== Citation == Westbrook, John D. / Young, Jasmine Y. / Shao, Chenghua / Feng, Zukang / Guranovic, Vladimir / Lawson, Catherine L. / Vallat, Brinda / Adams, Paul D. / Berrisf...") (current)
- 07:48, 14 December 2022 (diff | hist) . . (+62) . . Main Page (→Databases)
- 07:17, 12 December 2022 (diff | hist) . . (-90) . . Main Page (→Sample preparation)
- 07:11, 12 December 2022 (diff | hist) . . (+90) . . Main Page (→Sample preparation)
- 06:54, 2 December 2022 (diff | hist) . . (+4) . . Main Page (→Online courses and Learning material)
- 06:52, 2 December 2022 (diff | hist) . . (+54) . . Main Page (→Online courses and Learning material)
- 08:23, 23 November 2022 (diff | hist) . . (+1,372) . . N 2022Hryc Pathwalking (Created page with "== Citation == Hryc, Corey F. / Baker, Matthew L. Beyond the Backbone: The Next Generation of Pathwalking Utilities for Model Building in CryoEM Density Maps. 2022, Biomolecu...") (current)
- 08:22, 23 November 2022 (diff | hist) . . (+75) . . Main Page (→Fitting and docking)
- 08:11, 23 November 2022 (diff | hist) . . (+1,418) . . N 2022Hagen Screening (Created page with "== Citation == Hagen, Wim J. H. Light ‘Em up: Efficient Screening of Gold Foil Grids in Cryo-EM. 2022, Frontiers in Molecular Biosciences, Vol. 9, p. 912363 == Abstract ==...") (current)
- 08:10, 23 November 2022 (diff | hist) . . (+110) . . Main Page (→Automated data collection)
- 07:51, 23 November 2022 (diff | hist) . . (+1,748) . . N 2022Flutty bits (Created page with "== Citation == Fluty, Adam C. / Ludtke, Steven J. Precision requirements and data compression in CryoEM/CryoET. 2022, Journal of Structural Biology, Vol. 214, No. 3, p. 10787...") (current)
- 07:50, 23 November 2022 (diff | hist) . . (+66) . . Main Page (→Automated data collection)
- 07:24, 21 November 2022 (diff | hist) . . (+1,919) . . N 2022Liu Review (Created page with "== Citation == Liu, H.-F. / Zhou, Ye / Bartesaghi, Alberto. High-resolution structure determination using high-throughput electron cryo-tomography, 2022, Acta Crystallographi...") (current)
- 07:18, 21 November 2022 (diff | hist) . . (+89) . . Main Page (→Books and reviews)
- 14:55, 9 June 2022 (diff | hist) . . (+2,127) . . N 2022Sorzano 1000 (Created page with "== Citation == Sorzano, C. O. S. / Carazo, J. M. Cryo-Electron Microscopy: The field of 1,000^+ methods. 2022. Journal of structural biology, Vol. 214, p. 107861 == Abstract...") (current)
- 14:53, 9 June 2022 (diff | hist) . . (+74) . . Main Page (→Books and reviews)
- 14:49, 9 June 2022 (diff | hist) . . (+2,364) . . N 2022DiIorio Multiple (Created page with "== Citation == DiIorio, Megan C. / Kulczyk, Arkadiusz W. A Robust Single-Particle Cryo-Electron Microscopy (cryo-EM) Processing Workflow with cryoSPARC, RELION, and Scipion....") (current)
- 14:47, 9 June 2022 (diff | hist) . . (+159) . . Main Page (→Software)
- 14:43, 9 June 2022 (diff | hist) . . (+1,342) . . N 2022Waarshamanage EMDA (Created page with "== Citation == Warshamanage, Rangana / Yamashita, Keitaro / Murshudov, Garib N. EMDA: A Python package for Electron Microscopy Data Analysis. 2022. Journal of structural biol...") (current)
- 14:42, 9 June 2022 (diff | hist) . . (+89) . . Main Page (→Validation)
- 14:39, 9 June 2022 (diff | hist) . . (-2) . . 2022Frangakis Curvature (→Abstract) (current)
- 14:38, 9 June 2022 (diff | hist) . . (+1,510) . . N 2022Frangakis Curvature (Created page with "== Citation == Frangakis, Achilleas S. Mean curvature motion facilitates the segmentation and surface visualization of electron tomograms. 2022. Journal of structural biology...")
- 14:37, 9 June 2022 (diff | hist) . . (+115) . . Main Page (→Segmentation)
- 14:33, 9 June 2022 (diff | hist) . . (+1,894) . . N 2022Levitz Chameleon (Created page with "== Citation == Levitz, Talya S. / Brignole, Edward J. / Fong, Ivan / Darrow, Michele C. / Drennan, Catherine L. Effects of chameleon dispense-to-plunge speed on particle conc...") (current)
- 14:31, 9 June 2022 (diff | hist) . . (+144) . . Main Page (→Sample preparation)
- 14:27, 9 June 2022 (diff | hist) . . (+1,454) . . N 2022Zhu ElectronCounting (Created page with "== Citation == Zhu, Dongjie / Shi, Huigang / Wu, Chunling / Zhang, Xinzheng. An electron counting algorithm improves imaging of proteins with low-acceleration-voltage cryo-el...") (current)
- 14:25, 9 June 2022 (diff | hist) . . (+100) . . Main Page (→Automated data collection)
- 14:18, 9 June 2022 (diff | hist) . . (+1,646) . . N 2022Zhang EPicker (Created page with "== Citation == Zhang, Xinyu / Zhao, Tianfang / Chen, Jiansheng / Shen, Yuan / Li, Xueming. EPicker is an exemplar-based continual learning approach for knowledge accumulation...") (current)
- 14:17, 9 June 2022 (diff | hist) . . (+84) . . Main Page (→Automatic particle picking)
- 14:14, 9 June 2022 (diff | hist) . . (+2,641) . . N 2022Heymann ProgressiveSSNR (Created page with "== Citation == Heymann, J. Bernard. The progressive spectral signal-to-noise ratio of cryo-electron micrograph movies as a tool to assess quality and radiation damage. 2022....") (current)
- 14:12, 9 June 2022 (diff | hist) . . (+105) . . Main Page (→2D Preprocessing)
- 14:04, 9 June 2022 (diff | hist) . . (+2,591) . . N 2022Wang EMDB (Created page with "== Citation == Wang, Zhe / Patwardhan, Ardan / Kleywegt, Gerard J. Validation analysis of EMDB entries. 2022. Acta crystallographica. Section D, Structural biology, Vol. 78,...") (current)
- 14:01, 9 June 2022 (diff | hist) . . (+71) . . Main Page (→Databases)
- 13:55, 9 June 2022 (diff | hist) . . (+1,522) . . N 2022Dickerson Inelastic (Created page with "== Citation == Dickerson, Joshua L. / Lu, Peng-Han / Hristov, Dilyan / Dunin-Borkowski, Rafal E. / Russo, Christopher J. Imaging biological macromolecules in thick specimens:...") (current)
- 13:54, 9 June 2022 (diff | hist) . . (+97) . . Main Page (→Image formation)
- 13:50, 9 June 2022 (diff | hist) . . (+1,695) . . N 2022Peck Montage (Created page with "== Citation == Peck, Ariana / Carter, Stephen D. / Mai, Huanghao / Chen, Songye / Burt, Alister / Jensen, Grant J. Montage electron tomography of vitrified specimens. 2022. J...") (current)
- 13:48, 9 June 2022 (diff | hist) . . (+66) . . Main Page (→Automated data collection)
- 13:43, 9 June 2022 (diff | hist) . . (+2,196) . . N 2022Zhou Data (Created page with "== Citation == Zhou, Ye / Moscovich, Amit / Bartesaghi, Alberto. Data-driven determination of number of discrete conformations in single-particle cryo-EM. 2022. Computer Meth...") (current)
- 13:41, 9 June 2022 (diff | hist) . . (+86) . . Main Page (→3D Heterogeneity)
- 13:27, 9 June 2022 (diff | hist) . . (+2,143) . . N 2022Wang Spectral (Created page with "== Citation == Wang, Xiangwen / Lu, Yonggang / Lin, Xianghong. Heterogeneous cryo-EM projection image classification using a two-stage spectral clustering based on novel dist...") (current)
- 13:25, 9 June 2022 (diff | hist) . . (+82) . . Main Page (→2D Classification and clustering)
- 12:24, 3 May 2022 (diff | hist) . . (+2,445) . . N 2022Behkamal LPTD (Created page with "== Citation == Behkamal, Bahareh / Naghibzadeh, Mahmoud / Pagnani, Andrea / Saberi, Mohammad Reza / Al Nasr, Kamal. LPTD: A Novel Linear Programming-based Topology Determinat...") (current)
- 12:22, 3 May 2022 (diff | hist) . . (+84) . . Main Page (→Fitting and docking)
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