User contributions
From 3DEM-Methods
(newest | oldest) View (newer 100 | older 100) (20 | 50 | 100 | 250 | 500)
- 05:22, 7 June 2019 (diff | hist) . . (+1,777) . . N 2019Song FalconIII (Created page with "== Citation == Song, B.; Lenhart, J.; Flegler, V. J.; Makbul, C.; Rasmussen, T. & Böttcher, B. Capabilities of the Falcon III detector for single-particle structure determin...") (current)
- 05:21, 7 June 2019 (diff | hist) . . (+77) . . Main Page (→Sample preparation)
- 05:16, 7 June 2019 (diff | hist) . . (+1,389) . . N 2019 Pothula (Created page with "== Citation == Pothula, K. R.; Smyrnova, D. & Schroder, G. F. Clustering cryo-EM images of helical protein polymers for helical reconstructions. Ultramicroscopy, 2019 , 203 ,...") (current)
- 05:15, 7 June 2019 (diff | hist) . . (+72) . . Main Page (→Reconstruction)
- 13:59, 3 June 2019 (diff | hist) . . (+1,725) . . N 2019Zhang CoarseGrained (Created page with "== Citation == Zhang, Y.; Xia, K.; Cao, Z.; Gräter, F. & Xia, F. A new method for the construction of coarse-grained models of large biomolecules from low-resolution cryo-el...") (current)
- 13:58, 3 June 2019 (diff | hist) . . (+72) . . Main Page (→Fitting and docking)
- 05:42, 16 May 2019 (diff | hist) . . (+1,870) . . N 2013Yu Projection (Created page with "== Citation == Yu, L.; Snapp, R. R.; Ruiz, T. & Radermacher, M. Projection-based volume alignment. Journal of structural biology, 2013 , 182 , 93-105 == Abstract == When...") (current)
- 05:41, 16 May 2019 (diff | hist) . . (+90) . . Main Page (→Subtomogram analysis)
- 05:35, 16 May 2019 (diff | hist) . . (+1,250) . . N 2018Arnold Review (Created page with "== Citation == Arnold, S. A.; Müller, S. A.; Schmidli, C.; Syntychaki, A.; Rima, L.; Chami, M.; Stahlberg, H.; Goldie, K. N. & Braun, T. Miniaturizing EM Sample Preparation:...") (current)
- 05:33, 16 May 2019 (diff | hist) . . (+116) . . Main Page (→Sample preparation)
- 05:29, 16 May 2019 (diff | hist) . . (+2,656) . . N 2018Schmidli Miniaturized (Created page with "== Citation == Schmidli, C.; Rima, L.; Arnold, S. A.; Stohler, T.; Syntychaki, A.; Bieri, A.; Albiez, S.; Goldie, K. N.; Chami, M.; Stahlberg, H. & Braun, T. Miniaturized Sam...") (current)
- 05:29, 16 May 2019 (diff | hist) . . (+87) . . Main Page (→Sample preparation)
- 05:22, 16 May 2019 (diff | hist) . . (+1,620) . . N 2010Xu Long (Created page with "== Citation == Xu, W.; Xu, F.; Jones, M.; Keszthelyi, B.; Sedat, J.; Agard, D. & Mueller, K. High-performance iterative electron tomography reconstruction with long-object co...") (current)
- 05:20, 16 May 2019 (diff | hist) . . (+110) . . Main Page (→3D reconstruction)
- 16:10, 13 May 2019 (diff | hist) . . (+2,081) . . N 2016Turonova Artifacts (Created page with "== Citation == Turoňová, B.; Marsalek, L. & Slusallek, P. On geometric artifacts in cryo electron tomography. Ultramicroscopy, 2016 , 163 , 48-61 == Abstract == Single-...") (current)
- 16:09, 13 May 2019 (diff | hist) . . (+88) . . Main Page (→3D reconstruction)
- 12:15, 13 May 2019 (diff | hist) . . (+1,323) . . N 2019Yan MBIR (Created page with "== Citation == Yan, R.; Venkatakrishnan, S. V.; Liu, J.; Bouman, C. A.; Jiang, W. MBIR: A cryo-ET 3D reconstruction method that effectively minimizes missing wedge artifacts...") (current)
- 12:14, 13 May 2019 (diff | hist) . . (+115) . . Main Page (→3D reconstruction)
- 12:13, 13 May 2019 (diff | hist) . . (-1) . . 2015Venkatakrishnan MBIR (current)
- 12:12, 13 May 2019 (diff | hist) . . (+1,836) . . N 2015Venkatakrishnan MBIR (Created page with "== Citation == Venkatakrishnan, S. V.; Drummy, L. F.; Jackson, M.; De Graef, M.; Simmons, J.; Bouman, C. A. Model-Based Iterative Reconstruction for Bright-Field Electron T...")
- 12:08, 13 May 2019 (diff | hist) . . (+76) . . Main Page (→3D reconstruction)
- 15:34, 6 May 2019 (diff | hist) . . (+1,698) . . N 2019Zhang Local (Created page with "== Citation == Zhang, C.; Cantara, W.; Jeon, Y.; Musier-Forsyth, K.; Grigorieff, N. & Lyumkis, D. Analysis of discrete local variability and structural covariance in macromol...") (current)
- 15:33, 6 May 2019 (diff | hist) . . (+70) . . Main Page (→3D Heterogeneity)
- 12:12, 3 May 2019 (diff | hist) . . (+1,749) . . N 2019Peet EnergyDependence (Created page with "== Citation == Peet, M. J.; Henderson, R. & Russo, C. J. The energy dependence of contrast and damage in electron cryomicroscopy of biological molecules. Ultramicroscopy, 201...") (current)
- 12:11, 3 May 2019 (diff | hist) . . (+85) . . Main Page (→Image formation)
- 17:40, 17 April 2019 (diff | hist) . . (+2,080) . . N 2018Cheng BeamShift (Created page with "== Citation == Cheng, A.; Eng, E. T.; Alink, L.; Rice, W. J.; Jordan, K. D.; Kim, L. Y.; Potter, C. S. & Carragher, B. High resolution single particle cryo-electron microscop...") (current)
- 17:39, 17 April 2019 (diff | hist) . . (+83) . . Main Page (→Collection geometry)
- 17:30, 17 April 2019 (diff | hist) . . (+1,335) . . N 2019Herzik Multimodel (Created page with "== Citation == Herzik, M. A.; Fraser, J. S. & Lander, G. C. A Multi-model Approach to Assessing Local and Global Cryo-EM Map Quality. Structure, 2019, 27, 344-358.e3 == Abs...") (current)
- 17:28, 17 April 2019 (diff | hist) . . (+91) . . Main Page (→Validation)
- 17:24, 17 April 2019 (diff | hist) . . (+10) . . 2018Su GoCTF (current)
- 17:12, 17 April 2019 (diff | hist) . . (+1,413) . . N 2018Anoshina Simulation (Created page with "== Citation == Anoshina, N.; Sagindykov, T. & Sorokin, D. A Method for Generation of Synthetic 2D and 3D Cryo-EM Images. Programming and Computer Software, Springer, 2018, 44...") (current)
- 17:11, 17 April 2019 (diff | hist) . . (+79) . . Main Page (→Image formation)
- 06:00, 16 April 2019 (diff | hist) . . (+2,101) . . N 2018Zhao Fast (Created page with "== Citation == Zhao, Y.; Zeng, X.; Guo, Q. & Xu, M. An integration of fast alignment and maximum-likelihood methods for electron subtomogram averaging and classification. Bio...") (current)
- 05:57, 16 April 2019 (diff | hist) . . (+97) . . Main Page (→Subtomogram analysis)
- 05:54, 16 April 2019 (diff | hist) . . (+1,548) . . N 2018Carugo BFactors (Created page with "== Citation == Carugo, O. How large B-factors can be in protein crystal structures. BMC bioinformatics, 2018, 19, 61 == Abstract == Protein crystal structures are potentia...") (current)
- 05:53, 16 April 2019 (diff | hist) . . (+88) . . Main Page (→Resolution)
- 05:49, 16 April 2019 (diff | hist) . . (+1,500) . . N 2018Boumal SinglePass (Created page with "== Citation == Boumal, N.; Bendory, T.; Lederman, R. R. & Singer, A. Heterogeneous multireference alignment: A single pass approach. Proc. 52nd Annual Conf. Information Scien...") (current)
- 05:48, 16 April 2019 (diff | hist) . . (+5) . . Main Page (→3D Reconstruction)
- 05:47, 16 April 2019 (diff | hist) . . (+77) . . Main Page (→2D Classification and clustering)
- 05:45, 16 April 2019 (diff | hist) . . (+2,081) . . N 2018Levin Kam (Created page with "== Citation == Levin, E.; Bendory, T.; Boumal, N.; Kileel, J. & Singer, A. 3D ab initio modeling in cryo-EM by autocorrelation analysis. Proc. IEEE 15th Int. Symp. Biomedical...") (current)
- 05:43, 16 April 2019 (diff | hist) . . (+88) . . Main Page (→3D Reconstruction)
- 05:32, 16 April 2019 (diff | hist) . . (+1,495) . . N 2019Bonomi Multiscale (Created page with "== Citation == Bonomi, M.; Hanot, S.; Greenberg, C. H.; Sali, A.; Nilges, M.; Vendruscolo, M. & Pellarin, R. Bayesian Weighing of Electron Cryo-Microscopy Data for Integrativ...") (current)
- 05:31, 16 April 2019 (diff | hist) . . (+74) . . Main Page (→Fitting and docking)
- 05:17, 16 April 2019 (diff | hist) . . (+2,458) . . N 2019Wang Biobjective (Created page with "== Citation == Wang, W. L.; Yu, Z.; Castillo-Menendez, L. R.; Sodroski, J. & Mao, Y. Robustness of signal detection in cryo-electron microscopy via a bi-objective-function ap...") (current)
- 05:16, 16 April 2019 (diff | hist) . . (+92) . . Main Page (→Automatic particle picking)
- 17:22, 29 March 2019 (diff | hist) . . (+2,378) . . N 2019Avramov DeepLearning (Created page with "== Citation == Avramov, T. K.; Vyenielo, D.; Gomez-Blanco, J.; Adinarayanan, S.; Vargas, J. & Si, D. Deep Learning for Validating and Estimating Resolution of Cryo-Electron M...") (current)
- 17:21, 29 March 2019 (diff | hist) . . (+123) . . Main Page (→Resolution)
- 17:14, 29 March 2019 (diff | hist) . . (+1,594) . . N 2019Fernandez residual (Created page with "== Citation == Fernandez, J.-J.; Li, S. & Agard, D. A. Consideration of sample motion in cryo-tomography based on alignment residual interpolation. Journal of structural biol...") (current)
- 17:11, 29 March 2019 (diff | hist) . . (+98) . . Main Page (→Image alignment)
- 14:48, 27 March 2019 (diff | hist) . . (+1,335) . . N 2018Vilas MonoRes (Created page with "== Citation == Jose Luis Vilas, Josué Gómez-Blanco, Pablo Conesa, Roberto Melero, José Miguel de la Rosa-Trevín, Joaquin Otón, Jesús Cuenca, Roberto Marabini, José Mar...") (current)
- 14:46, 27 March 2019 (diff | hist) . . (+77) . . Main Page (→Resolution)
- 22:24, 26 March 2019 (diff | hist) . . (+1,752) . . N 2019Havelkova Regularization (Created page with "== Citation == Havelkova, E. Regularization methods for discrete inverse problems arising in single particle analysis. Fac. Mathematics and Physics, Charles University, Fac....") (current)
- 22:23, 26 March 2019 (diff | hist) . . (+95) . . Main Page (→3D Reconstruction)
- 22:16, 26 March 2019 (diff | hist) . . (+1,148) . . N 2009Rose Optics (Created page with "== Citation == Rose, H. Geometrical Charged-Particle Optics. Springer, 2009 == Abstract == This reference monograph covers all theoretical aspects of modern geometrical cha...") (current)
- 22:15, 26 March 2019 (diff | hist) . . (+72) . . Main Page (→Image formation)
- 07:14, 25 March 2019 (diff | hist) . . (+1,773) . . N 2019Zivanov BayesianBIM (Created page with "== Citation == Zivanov, J.; Nakane, T. & Scheres, S. H. W. A Bayesian approach to beam-induced motion correction in cryo-EM single-particle analysis. IUCrJ, 2019 , 6 , 5-17...") (current)
- 07:13, 25 March 2019 (diff | hist) . . (+90) . . Main Page (→2D Preprocessing)
- 07:09, 25 March 2019 (diff | hist) . . (+965) . . N 2018Michels RBF (Created page with "== Citation == Michels, Y.; Baudrier, E.; Mazo, L. Radial Function Based Ab-Initio Tomographic Reconstruction for Cryo Electron Microscopy, 25th IEEE Intl. Conf. on Image Pro...") (current)
- 07:08, 25 March 2019 (diff | hist) . . (+95) . . Main Page (→3D Reconstruction)
- 07:04, 25 March 2019 (diff | hist) . . (-92) . . Main Page (→Fitting and docking)
- 07:01, 25 March 2019 (diff | hist) . . (+92) . . Main Page (→Fitting and docking)
- 05:53, 27 February 2019 (diff | hist) . . (+1,034) . . N 2019Chreifi TiltSeries (Created page with "== Citation == Chreifi, G.; Chen, S.; Metskas, L. A.; Kaplan, M. & Jensen, G. J. Rapid tilt-series acquisition for electron cryotomography. Journal of structural biology, 201...") (current)
- 05:52, 27 February 2019 (diff | hist) . . (+102) . . Main Page (→Automated data collection)
- 05:48, 27 February 2019 (diff | hist) . . (+1,851) . . N 2019Ramlaul Filtering (Created page with "== Citation == Ramlaul, K.; Palmer, C. M., Aylett, C. H. S. A Local Agreement Filtering Algorithm for Transmission EM Reconstructions. Journal of structural biology, 2019, 2...") (current)
- 05:47, 27 February 2019 (diff | hist) . . (+81) . . Main Page (→Sharpening of high resolution information)
- 05:36, 27 February 2019 (diff | hist) . . (+2,455) . . N 2019Zhang Pixer (Created page with "== Citation == Zhang, J.; Wang, Z.; Chen, Y.; Han, R.; Liu, Z.; Sun, F. Zhang, F. PIXER: an automated particle-selection method based on segmentation using a deep neural netw...") (current)
- 05:35, 27 February 2019 (diff | hist) . . (+71) . . Main Page (→Automatic particle picking)
- 21:08, 4 February 2019 (diff | hist) . . (+973) . . N 2018Noble Reducing (Created page with "== Citation == Noble, A. J.; Wei, H.; Dandey, V. P.; Zhang, Z.; Tan, Y. Z.; Potter, C. S. and Carragher, B. Reducing effects of particle adsorption to the air-water interface...") (current)
- 21:07, 4 February 2019 (diff | hist) . . (+68) . . Main Page (→Sample preparation)
- 07:50, 31 January 2019 (diff | hist) . . (+1,696) . . N 2018Kovacs Medium (Created page with "== Citation == Kovacs, J. A.; Galkin, V. E. & Wriggers, W. Accurate flexible refinement of atomic models against medium-resolution cryo-EM maps using damped dynamics. BMC...") (current)
- 07:49, 31 January 2019 (diff | hist) . . (+78) . . Main Page (→Fitting and docking)
- 07:43, 31 January 2019 (diff | hist) . . (+881) . . N 2018Sieben Multicolor (Created page with "== Citation == Sieben, C.; Banterle, N.; Douglass, K. M.; Gönczy, P. & Manley, S. Multicolor single-particle reconstruction of protein complexes. Nature methods, 2018, 1...") (current)
- 07:42, 31 January 2019 (diff | hist) . . (+102) . . Main Page (→Relationship to other structural information sources)
- 07:29, 31 January 2019 (diff | hist) . . (+1,357) . . N 2018Nakane MultiBody (Created page with "== Citation == Nakane, T.; Kimanius, D.; Lindahl, E. & Scheres, S. H. Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RE...") (current)
- 07:28, 31 January 2019 (diff | hist) . . (+95) . . Main Page (→3D Heterogeneity)
- 07:17, 31 January 2019 (diff | hist) . . (+1,723) . . N 2018Jonic Gaussian (Created page with "== Citation == Jonić, S. A methodology using Gaussian-based density map approximation to assess sets of cryo-electron microscopy density maps. Journal of structural biology,...") (current)
- 07:16, 31 January 2019 (diff | hist) . . (+97) . . Main Page (→Validation)
- 06:52, 31 January 2019 (diff | hist) . . (+1,332) . . N 2018Cianfrocco cloud (Created page with "== Citation == Cianfrocco, M. A.; Lahiri, I.; DiMaio, F. and Leschziner, A. E. cryoem-cloud-tools: A software platform to deploy and manage cryo-EM jobs in the cloud. Journal...") (current)
- 06:51, 31 January 2019 (diff | hist) . . (+61) . . Main Page (→Software)
- 06:48, 31 January 2019 (diff | hist) . . (+1,992) . . N 2018Gewering Detergents (Created page with "== Citation == Gewering, T.; Januliene, D.; Ries, A. B. and Moeller, A. Know your detergents: A case study on detergent background in negative stain electron microscopy. Jour...") (current)
- 06:46, 31 January 2019 (diff | hist) . . (+83) . . Main Page (→Sample preparation)
- 06:41, 31 January 2019 (diff | hist) . . (+1,430) . . N 2018Rice Ice (Created page with "== Citation == Rice, W. J.; Cheng, A.; Noble, A. J.; Eng, E. T.; Kim, L. Y.; Carragher, B. and Potter, C. S. Routine determination of ice thickness for cryo-EM grids. Journal...") (current)
- 06:40, 31 January 2019 (diff | hist) . . (+72) . . Main Page (→Sample preparation)
- 06:32, 31 January 2019 (diff | hist) . . (+1,973) . . N 2019Han Dual (Created page with "== Citation == Han, R.; Wan, X.; Li, L.; Lawrence, A.; Yang, P.; Li, Y.; Wang, S.; Sun, F.; Liu, Z.; Gao, X. & Zhang, F. AuTom-dualx: a toolkit for fully automatic fiduci...") (current)
- 06:30, 31 January 2019 (diff | hist) . . (+97) . . Main Page (→Image alignment)
- 06:28, 31 January 2019 (diff | hist) . . (+717) . . N 2018Scapin DrugDiscovery (Created page with "== Citation == Scapin, G.; Potter, C. S. & Carragher, B. Cryo-EM for Small Molecules Discovery, Design, Understanding, and Application. Cell chemical biology, 2018, 25, 1...") (current)
- 06:27, 31 January 2019 (diff | hist) . . (+88) . . Main Page (→Books and reviews)
- 08:11, 17 January 2019 (diff | hist) . . (+1,473) . . N 2019Thompson Protocol (Created page with "== Citation == Thompson, R. F.; Iadanza, M. G.; Hesketh, E. L.; Rawson, S. and Ranson, N. A. Collection, pre-processing and on-the-fly analysis of data for high-resolution, s...") (current)
- 08:10, 17 January 2019 (diff | hist) . . (+71) . . Main Page (→Automated data collection)
- 07:45, 17 January 2019 (diff | hist) . . (+2,248) . . N 2015Sachse Review (Created page with "== Citation == Sachse, C. Single-particle based helical reconstruction-how to make the most of real and Fourier space. AIMS Biophysics, 2015, 2, 219-244 == Abstract == The...") (current)
- 07:44, 17 January 2019 (diff | hist) . . (+20) . . Main Page (→Books and reviews)
- 07:35, 17 January 2019 (diff | hist) . . (+1,662) . . N 2018Ouyang Denoising (Created page with "== Citation == Ouyang, J.; Liang, Z.; Chen, C.; Fu, Z.; Zhang, Y. and Liu, H. Cryo-electron microscope image denoising based on the geodesic distance. BMC structural biology,...") (current)
- 07:31, 17 January 2019 (diff | hist) . . (+79) . . Main Page (→2D Preprocessing)
- 07:27, 17 January 2019 (diff | hist) . . (+2,464) . . N 2018Ando Correlative (Created page with "== Citation == Ando, T. et al. The 2018 correlative microscopy techniques roadmap, J. Physics D: Applied Physics, 2018, 51, 44301 == Abstract == Developments in microscopy...") (current)
- 07:23, 17 January 2019 (diff | hist) . . (+86) . . Main Page (→Relationship to other structural information sources)
- 07:14, 17 January 2019 (diff | hist) . . (+1,553) . . N 2018Noble ParticleDistribution (Created page with "== Citation == Noble, A. J.; Dandey, V. P.; Wei, H.; Brasch, J.; Chase, J.; Acharya, P.; Tan, Y. Z.; Zhang, Z.; Kim, L. Y.; Scapin, G.; Rapp, M.; Eng, E. T.; Rice, W. J.; Che...") (current)
- 07:10, 17 January 2019 (diff | hist) . . (0) . . Main Page (→Image formation)
- 07:10, 17 January 2019 (diff | hist) . . (+76) . . Main Page (→Image formation)
- 06:52, 2 January 2019 (diff | hist) . . (+1,693) . . N 2018Su GoCTF (Created page with "== Citation == Su, M. goCTF: Geometrically optimized CTF determination for single-particle cryo-EM. Journal of structural biology, 2018, == Abstract == Preferred particle...")
- 06:50, 2 January 2019 (diff | hist) . . (+66) . . Main Page (→CTF estimation and restoration)
(newest | oldest) View (newer 100 | older 100) (20 | 50 | 100 | 250 | 500)