User contributions
From 3DEM-Methods
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- 20:07, 3 July 2019 (diff | hist) . . (+98) . . Main Page (→3D Reconstruction)
- 20:07, 3 July 2019 (diff | hist) . . (+98) . . Main Page (→3D Alignment)
- 05:59, 2 July 2019 (diff | hist) . . (+1,478) . . N 2018Hu ParticleFilter (Created page with "== Citation == Hu, M.; Yu, H.; Gu, K.; Wang, Z.; Ruan, H.; Wang, K.; Ren, S.; Li, B.; Gan, L.; Xu, S.; Yang, G.; Shen, Y. & Li, X. A particle-filter framework for robust cryo...") (current)
- 05:55, 2 July 2019 (diff | hist) . . (+93) . . Main Page (→3D Reconstruction)
- 05:47, 2 July 2019 (diff | hist) . . (+1,190) . . N 2015Rosenthal Review (Created page with "== Citation == Rosenthal, P. B. & Rubinstein, J. L. Validating maps from single particle electron cryomicroscopy. Current opinion in structural biology, 2015 , 34 , 135-144...") (current)
- 05:46, 2 July 2019 (diff | hist) . . (+71) . . Main Page (→Validation)
- 05:40, 2 July 2019 (diff | hist) . . (+1,883) . . N 2018Shuo Network (Created page with "== Citation == Shuo, Y.; Zhang, B.; Shen, H. & Yang, Y. NCEM: Network structural similarity metric-based clustering for noisy cryo-EM single particle images Proc. Chinese Au...") (current)
- 05:39, 2 July 2019 (diff | hist) . . (+77) . . Main Page (→2D Classification and clustering)
- 05:34, 2 July 2019 (diff | hist) . . (+2,081) . . N 2019Serna Review (Created page with "== Citation == Serna, M. Hands on Methods for High Resolution Cryo-Electron Microscopy Structures of Heterogeneous Macromolecular Complexes. Frontiers in molecular bioscienc...") (current)
- 05:32, 2 July 2019 (diff | hist) . . (+70) . . Main Page (→3D Heterogeneity)
- 05:26, 2 July 2019 (diff | hist) . . (+1,558) . . N 2018Bell EMAN2 (Created page with "== Citation == Bell, J. M.; Chen, M.; Durmaz, T.; Fluty, A. C. & Ludtke, S. J. New software tools in EMAN2 inspired by EMDatabank map challenge. Journal of structural biolog...") (current)
- 05:25, 2 July 2019 (diff | hist) . . (+55) . . Main Page (→Software)
- 07:53, 27 June 2019 (diff | hist) . . (+1,213) . . N 2019Lyumkis Review (Created page with "== Citation == Lyumkis, D. Challenges and opportunities in cryo-EM single-particle analysis. The Journal of biological chemistry, 2019 , 294 , 5181-5197 == Abstract == Cr...") (current)
- 07:52, 27 June 2019 (diff | hist) . . (+63) . . Main Page (→Books and reviews)
- 07:08, 27 June 2019 (diff | hist) . . (+1,413) . . N 2018Afonine Phenix (Created page with "== Citation == Afonine, P. V.; Klaholz, B. P.; Moriarty, N. W.; Poon, B. K.; Sobolev, O. V.; Terwilliger, T. C.; Adams, P. D. & Urzhumtsev, A. New tools for the analysis and...") (current)
- 07:07, 27 June 2019 (diff | hist) . . (+86) . . Main Page (→Validation)
- 05:39, 24 June 2019 (diff | hist) . . (+1,685) . . N 2008Herman Graph (Created page with "== Citation == Herman, G. T. & Kalinowski, M. Classification of heterogeneous electron microscopic projections into homogeneous subsets. Ultramicroscopy, 2008 , 108 , 327-33...") (current)
- 05:38, 24 June 2019 (diff | hist) . . (+75) . . Main Page (→3D Heterogeneity)
- 22:53, 9 June 2019 (diff | hist) . . (+1,087) . . N 2019Eng ImageCompression (Created page with "== Citation == Eng, E. T.; Kopylov, M.; Negro, C. J.; Dallaykan, S.; Rice, W. J.; Jordan, K. D.; Kelley, K.; Carragher, B. & Potter, C. S. Reducing cryoEM file storage using...") (current)
- 22:52, 9 June 2019 (diff | hist) . . (+87) . . Main Page (→Automated data collection)
- 22:43, 9 June 2019 (diff | hist) . . (+1,109) . . N 2019DImprima Denaturation (Created page with "== Citation == D'Imprima, E.; Floris, D.; Joppe, M.; Sánchez, R.; Grininger, M. & Kühlbrandt, W. Protein denaturation at the air-water interface and how to prevent it. eLi...") (current)
- 22:41, 9 June 2019 (diff | hist) . . (+116) . . Main Page (→Sample preparation)
- 22:34, 9 June 2019 (diff | hist) . . (+1,756) . . N 2019Radermacher Correlation (Created page with "== Citation == Radermacher, M. & Ruiz, T. On cross-correlations, averages and noise in electron microscopy. Acta crystallographica. Section F, Structural biology communicati...") (current)
- 22:33, 9 June 2019 (diff | hist) . . (+116) . . Main Page (→2D Alignment)
- 05:33, 7 June 2019 (diff | hist) . . (+1,362) . . N 2010Yu PPCA (Created page with "== Citation == Yu, L.; Snapp, R. R.; Ruiz, T. & Radermacher, M. Probabilistic principal component analysis with expectation maximization (PPCA-EM) facilitates volume classifi...") (current)
- 05:32, 7 June 2019 (diff | hist) . . (+76) . . Main Page (→Subtomogram analysis)
- 05:27, 7 June 2019 (diff | hist) . . (+1,474) . . N 2019Schur Review (Created page with "== Citation == Schur, F. K. Toward high-resolution in situ structural biology with cryo-electron tomography and subtomogram averaging. Current opinion in structural biology,...") (current)
- 05:26, 7 June 2019 (diff | hist) . . (+94) . . Main Page (→Books and reviews)
- 05:22, 7 June 2019 (diff | hist) . . (+1,777) . . N 2019Song FalconIII (Created page with "== Citation == Song, B.; Lenhart, J.; Flegler, V. J.; Makbul, C.; Rasmussen, T. & Böttcher, B. Capabilities of the Falcon III detector for single-particle structure determin...") (current)
- 05:21, 7 June 2019 (diff | hist) . . (+77) . . Main Page (→Sample preparation)
- 05:16, 7 June 2019 (diff | hist) . . (+1,389) . . N 2019 Pothula (Created page with "== Citation == Pothula, K. R.; Smyrnova, D. & Schroder, G. F. Clustering cryo-EM images of helical protein polymers for helical reconstructions. Ultramicroscopy, 2019 , 203 ,...") (current)
- 05:15, 7 June 2019 (diff | hist) . . (+72) . . Main Page (→Reconstruction)
- 13:59, 3 June 2019 (diff | hist) . . (+1,725) . . N 2019Zhang CoarseGrained (Created page with "== Citation == Zhang, Y.; Xia, K.; Cao, Z.; Gräter, F. & Xia, F. A new method for the construction of coarse-grained models of large biomolecules from low-resolution cryo-el...") (current)
- 13:58, 3 June 2019 (diff | hist) . . (+72) . . Main Page (→Fitting and docking)
- 05:42, 16 May 2019 (diff | hist) . . (+1,870) . . N 2013Yu Projection (Created page with "== Citation == Yu, L.; Snapp, R. R.; Ruiz, T. & Radermacher, M. Projection-based volume alignment. Journal of structural biology, 2013 , 182 , 93-105 == Abstract == When...") (current)
- 05:41, 16 May 2019 (diff | hist) . . (+90) . . Main Page (→Subtomogram analysis)
- 05:35, 16 May 2019 (diff | hist) . . (+1,250) . . N 2018Arnold Review (Created page with "== Citation == Arnold, S. A.; Müller, S. A.; Schmidli, C.; Syntychaki, A.; Rima, L.; Chami, M.; Stahlberg, H.; Goldie, K. N. & Braun, T. Miniaturizing EM Sample Preparation:...") (current)
- 05:33, 16 May 2019 (diff | hist) . . (+116) . . Main Page (→Sample preparation)
- 05:29, 16 May 2019 (diff | hist) . . (+2,656) . . N 2018Schmidli Miniaturized (Created page with "== Citation == Schmidli, C.; Rima, L.; Arnold, S. A.; Stohler, T.; Syntychaki, A.; Bieri, A.; Albiez, S.; Goldie, K. N.; Chami, M.; Stahlberg, H. & Braun, T. Miniaturized Sam...") (current)
- 05:29, 16 May 2019 (diff | hist) . . (+87) . . Main Page (→Sample preparation)
- 05:22, 16 May 2019 (diff | hist) . . (+1,620) . . N 2010Xu Long (Created page with "== Citation == Xu, W.; Xu, F.; Jones, M.; Keszthelyi, B.; Sedat, J.; Agard, D. & Mueller, K. High-performance iterative electron tomography reconstruction with long-object co...") (current)
- 05:20, 16 May 2019 (diff | hist) . . (+110) . . Main Page (→3D reconstruction)
- 16:10, 13 May 2019 (diff | hist) . . (+2,081) . . N 2016Turonova Artifacts (Created page with "== Citation == Turoňová, B.; Marsalek, L. & Slusallek, P. On geometric artifacts in cryo electron tomography. Ultramicroscopy, 2016 , 163 , 48-61 == Abstract == Single-...") (current)
- 16:09, 13 May 2019 (diff | hist) . . (+88) . . Main Page (→3D reconstruction)
- 12:15, 13 May 2019 (diff | hist) . . (+1,323) . . N 2019Yan MBIR (Created page with "== Citation == Yan, R.; Venkatakrishnan, S. V.; Liu, J.; Bouman, C. A.; Jiang, W. MBIR: A cryo-ET 3D reconstruction method that effectively minimizes missing wedge artifacts...") (current)
- 12:14, 13 May 2019 (diff | hist) . . (+115) . . Main Page (→3D reconstruction)
- 12:13, 13 May 2019 (diff | hist) . . (-1) . . 2015Venkatakrishnan MBIR (current)
- 12:12, 13 May 2019 (diff | hist) . . (+1,836) . . N 2015Venkatakrishnan MBIR (Created page with "== Citation == Venkatakrishnan, S. V.; Drummy, L. F.; Jackson, M.; De Graef, M.; Simmons, J.; Bouman, C. A. Model-Based Iterative Reconstruction for Bright-Field Electron T...")
- 12:08, 13 May 2019 (diff | hist) . . (+76) . . Main Page (→3D reconstruction)
- 15:34, 6 May 2019 (diff | hist) . . (+1,698) . . N 2019Zhang Local (Created page with "== Citation == Zhang, C.; Cantara, W.; Jeon, Y.; Musier-Forsyth, K.; Grigorieff, N. & Lyumkis, D. Analysis of discrete local variability and structural covariance in macromol...") (current)
- 15:33, 6 May 2019 (diff | hist) . . (+70) . . Main Page (→3D Heterogeneity)
- 12:12, 3 May 2019 (diff | hist) . . (+1,749) . . N 2019Peet EnergyDependence (Created page with "== Citation == Peet, M. J.; Henderson, R. & Russo, C. J. The energy dependence of contrast and damage in electron cryomicroscopy of biological molecules. Ultramicroscopy, 201...") (current)
- 12:11, 3 May 2019 (diff | hist) . . (+85) . . Main Page (→Image formation)
- 17:40, 17 April 2019 (diff | hist) . . (+2,080) . . N 2018Cheng BeamShift (Created page with "== Citation == Cheng, A.; Eng, E. T.; Alink, L.; Rice, W. J.; Jordan, K. D.; Kim, L. Y.; Potter, C. S. & Carragher, B. High resolution single particle cryo-electron microscop...") (current)
- 17:39, 17 April 2019 (diff | hist) . . (+83) . . Main Page (→Collection geometry)
- 17:30, 17 April 2019 (diff | hist) . . (+1,335) . . N 2019Herzik Multimodel (Created page with "== Citation == Herzik, M. A.; Fraser, J. S. & Lander, G. C. A Multi-model Approach to Assessing Local and Global Cryo-EM Map Quality. Structure, 2019, 27, 344-358.e3 == Abs...") (current)
- 17:28, 17 April 2019 (diff | hist) . . (+91) . . Main Page (→Validation)
- 17:24, 17 April 2019 (diff | hist) . . (+10) . . 2018Su GoCTF (current)
- 17:12, 17 April 2019 (diff | hist) . . (+1,413) . . N 2018Anoshina Simulation (Created page with "== Citation == Anoshina, N.; Sagindykov, T. & Sorokin, D. A Method for Generation of Synthetic 2D and 3D Cryo-EM Images. Programming and Computer Software, Springer, 2018, 44...") (current)
- 17:11, 17 April 2019 (diff | hist) . . (+79) . . Main Page (→Image formation)
- 06:00, 16 April 2019 (diff | hist) . . (+2,101) . . N 2018Zhao Fast (Created page with "== Citation == Zhao, Y.; Zeng, X.; Guo, Q. & Xu, M. An integration of fast alignment and maximum-likelihood methods for electron subtomogram averaging and classification. Bio...") (current)
- 05:57, 16 April 2019 (diff | hist) . . (+97) . . Main Page (→Subtomogram analysis)
- 05:54, 16 April 2019 (diff | hist) . . (+1,548) . . N 2018Carugo BFactors (Created page with "== Citation == Carugo, O. How large B-factors can be in protein crystal structures. BMC bioinformatics, 2018, 19, 61 == Abstract == Protein crystal structures are potentia...") (current)
- 05:53, 16 April 2019 (diff | hist) . . (+88) . . Main Page (→Resolution)
- 05:49, 16 April 2019 (diff | hist) . . (+1,500) . . N 2018Boumal SinglePass (Created page with "== Citation == Boumal, N.; Bendory, T.; Lederman, R. R. & Singer, A. Heterogeneous multireference alignment: A single pass approach. Proc. 52nd Annual Conf. Information Scien...") (current)
- 05:48, 16 April 2019 (diff | hist) . . (+5) . . Main Page (→3D Reconstruction)
- 05:47, 16 April 2019 (diff | hist) . . (+77) . . Main Page (→2D Classification and clustering)
- 05:45, 16 April 2019 (diff | hist) . . (+2,081) . . N 2018Levin Kam (Created page with "== Citation == Levin, E.; Bendory, T.; Boumal, N.; Kileel, J. & Singer, A. 3D ab initio modeling in cryo-EM by autocorrelation analysis. Proc. IEEE 15th Int. Symp. Biomedical...") (current)
- 05:43, 16 April 2019 (diff | hist) . . (+88) . . Main Page (→3D Reconstruction)
- 05:32, 16 April 2019 (diff | hist) . . (+1,495) . . N 2019Bonomi Multiscale (Created page with "== Citation == Bonomi, M.; Hanot, S.; Greenberg, C. H.; Sali, A.; Nilges, M.; Vendruscolo, M. & Pellarin, R. Bayesian Weighing of Electron Cryo-Microscopy Data for Integrativ...") (current)
- 05:31, 16 April 2019 (diff | hist) . . (+74) . . Main Page (→Fitting and docking)
- 05:17, 16 April 2019 (diff | hist) . . (+2,458) . . N 2019Wang Biobjective (Created page with "== Citation == Wang, W. L.; Yu, Z.; Castillo-Menendez, L. R.; Sodroski, J. & Mao, Y. Robustness of signal detection in cryo-electron microscopy via a bi-objective-function ap...") (current)
- 05:16, 16 April 2019 (diff | hist) . . (+92) . . Main Page (→Automatic particle picking)
- 17:22, 29 March 2019 (diff | hist) . . (+2,378) . . N 2019Avramov DeepLearning (Created page with "== Citation == Avramov, T. K.; Vyenielo, D.; Gomez-Blanco, J.; Adinarayanan, S.; Vargas, J. & Si, D. Deep Learning for Validating and Estimating Resolution of Cryo-Electron M...") (current)
- 17:21, 29 March 2019 (diff | hist) . . (+123) . . Main Page (→Resolution)
- 17:14, 29 March 2019 (diff | hist) . . (+1,594) . . N 2019Fernandez residual (Created page with "== Citation == Fernandez, J.-J.; Li, S. & Agard, D. A. Consideration of sample motion in cryo-tomography based on alignment residual interpolation. Journal of structural biol...") (current)
- 17:11, 29 March 2019 (diff | hist) . . (+98) . . Main Page (→Image alignment)
- 14:48, 27 March 2019 (diff | hist) . . (+1,335) . . N 2018Vilas MonoRes (Created page with "== Citation == Jose Luis Vilas, Josué Gómez-Blanco, Pablo Conesa, Roberto Melero, José Miguel de la Rosa-Trevín, Joaquin Otón, Jesús Cuenca, Roberto Marabini, José Mar...") (current)
- 14:46, 27 March 2019 (diff | hist) . . (+77) . . Main Page (→Resolution)
- 22:24, 26 March 2019 (diff | hist) . . (+1,752) . . N 2019Havelkova Regularization (Created page with "== Citation == Havelkova, E. Regularization methods for discrete inverse problems arising in single particle analysis. Fac. Mathematics and Physics, Charles University, Fac....") (current)
- 22:23, 26 March 2019 (diff | hist) . . (+95) . . Main Page (→3D Reconstruction)
- 22:16, 26 March 2019 (diff | hist) . . (+1,148) . . N 2009Rose Optics (Created page with "== Citation == Rose, H. Geometrical Charged-Particle Optics. Springer, 2009 == Abstract == This reference monograph covers all theoretical aspects of modern geometrical cha...") (current)
- 22:15, 26 March 2019 (diff | hist) . . (+72) . . Main Page (→Image formation)
- 07:14, 25 March 2019 (diff | hist) . . (+1,773) . . N 2019Zivanov BayesianBIM (Created page with "== Citation == Zivanov, J.; Nakane, T. & Scheres, S. H. W. A Bayesian approach to beam-induced motion correction in cryo-EM single-particle analysis. IUCrJ, 2019 , 6 , 5-17...") (current)
- 07:13, 25 March 2019 (diff | hist) . . (+90) . . Main Page (→2D Preprocessing)
- 07:09, 25 March 2019 (diff | hist) . . (+965) . . N 2018Michels RBF (Created page with "== Citation == Michels, Y.; Baudrier, E.; Mazo, L. Radial Function Based Ab-Initio Tomographic Reconstruction for Cryo Electron Microscopy, 25th IEEE Intl. Conf. on Image Pro...") (current)
- 07:08, 25 March 2019 (diff | hist) . . (+95) . . Main Page (→3D Reconstruction)
- 07:04, 25 March 2019 (diff | hist) . . (-92) . . Main Page (→Fitting and docking)
- 07:01, 25 March 2019 (diff | hist) . . (+92) . . Main Page (→Fitting and docking)
- 05:53, 27 February 2019 (diff | hist) . . (+1,034) . . N 2019Chreifi TiltSeries (Created page with "== Citation == Chreifi, G.; Chen, S.; Metskas, L. A.; Kaplan, M. & Jensen, G. J. Rapid tilt-series acquisition for electron cryotomography. Journal of structural biology, 201...") (current)
- 05:52, 27 February 2019 (diff | hist) . . (+102) . . Main Page (→Automated data collection)
- 05:48, 27 February 2019 (diff | hist) . . (+1,851) . . N 2019Ramlaul Filtering (Created page with "== Citation == Ramlaul, K.; Palmer, C. M., Aylett, C. H. S. A Local Agreement Filtering Algorithm for Transmission EM Reconstructions. Journal of structural biology, 2019, 2...") (current)
- 05:47, 27 February 2019 (diff | hist) . . (+81) . . Main Page (→Sharpening of high resolution information)
- 05:36, 27 February 2019 (diff | hist) . . (+2,455) . . N 2019Zhang Pixer (Created page with "== Citation == Zhang, J.; Wang, Z.; Chen, Y.; Han, R.; Liu, Z.; Sun, F. Zhang, F. PIXER: an automated particle-selection method based on segmentation using a deep neural netw...") (current)
- 05:35, 27 February 2019 (diff | hist) . . (+71) . . Main Page (→Automatic particle picking)
- 21:08, 4 February 2019 (diff | hist) . . (+973) . . N 2018Noble Reducing (Created page with "== Citation == Noble, A. J.; Wei, H.; Dandey, V. P.; Zhang, Z.; Tan, Y. Z.; Potter, C. S. and Carragher, B. Reducing effects of particle adsorption to the air-water interface...") (current)
- 21:07, 4 February 2019 (diff | hist) . . (+68) . . Main Page (→Sample preparation)
- 07:50, 31 January 2019 (diff | hist) . . (+1,696) . . N 2018Kovacs Medium (Created page with "== Citation == Kovacs, J. A.; Galkin, V. E. & Wriggers, W. Accurate flexible refinement of atomic models against medium-resolution cryo-EM maps using damped dynamics. BMC...") (current)
- 07:49, 31 January 2019 (diff | hist) . . (+78) . . Main Page (→Fitting and docking)
- 07:43, 31 January 2019 (diff | hist) . . (+881) . . N 2018Sieben Multicolor (Created page with "== Citation == Sieben, C.; Banterle, N.; Douglass, K. M.; Gönczy, P. & Manley, S. Multicolor single-particle reconstruction of protein complexes. Nature methods, 2018, 1...") (current)
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