User contributions
From 3DEM-Methods
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- 08:06, 6 August 2021 (diff | hist) . . (+1,617) . . N 2021Chen GM (Created page with "== Citation == Chen, M. & Ludtke, S. J. Deep learning-based mixed-dimensional Gaussian mixture model for characterizing variability in cryo-EM. Nature Methods, 2021, 18:...") (current)
- 08:03, 6 August 2021 (diff | hist) . . (+125) . . Main Page (→3D Heterogeneity)
- 07:40, 6 August 2021 (diff | hist) . . (+1,150) . . N 2021Mendez Graph (Created page with "== Citation == Méndez, J.; Garduño, E.; Carazo, J. M. & Sorzano, C. O. S. Identification of incorrectly oriented particles in Cryo-EM Single Particle Analys...") (current)
- 07:37, 6 August 2021 (diff | hist) . . (+87) . . Main Page (→Validation)
- 08:42, 21 July 2021 (diff | hist) . . (+1,513) . . N 2021Ki Conformational (Created page with "== Citation == Ki, H.; Jo, J.; Kim, Y.; Kim, T. W.; Kim, C.; Kim, Y.; Kim, C. W.; Muniyappan, S.; Lee, S. J.; Kim, Y. & others. Uncovering the Conformational Distribution...") (current)
- 08:40, 21 July 2021 (diff | hist) . . (+120) . . Main Page (→Sample preparation)
- 08:12, 21 July 2021 (diff | hist) . . (+1,197) . . N 2021Yang CRIM (Created page with "== Citation == Sheriff, J.; Fletcher, I. W. & Cumpson, P. J. Computer-readable Image Markers for Automated Registration in Correlative Microscopy - "autoCRIM". Ultramicro...") (current)
- 08:10, 21 July 2021 (diff | hist) . . (+101) . . Main Page (→Automated data collection)
- 13:05, 20 July 2021 (diff | hist) . . (+1,735) . . N 2021Ohashi GRIPS (Created page with "== Citation == Ohashi, M.; Hosokawa, F.; Shinkawa, T. & Iwasaki, K. Evaluation of automated particle picking for cryogenic electron microscopy using high-precision transm...") (current)
- 13:03, 20 July 2021 (diff | hist) . . (+66) . . Main Page (→Automatic particle picking)
- 06:56, 14 July 2021 (diff | hist) . . (+2,061) . . N 2021Giraldo cryoBIFE (Created page with "== Citation == Giraldo-Barreto, J.; Ortiz, S.; Thiede, E. H.; Palacio-Rodriguez, K.; Carpenter, B.; Barnett, A. H. & Cossio, P. A Bayesian approach to extracting free-ene...") (current)
- 06:55, 14 July 2021 (diff | hist) . . (+98) . . Main Page (→3D Heterogeneity)
- 06:46, 14 July 2021 (diff | hist) . . (+2,053) . . N 2021Mori Flexible (Created page with "== Citation == Mori, T.; Terashi, G.; Matsuoka, D.; Kihara, D. & Sugita, Y. Efficient Flexible Fitting Refinement with Automatic Error Fixing for De Novo Structure Modeli...") (current)
- 06:44, 14 July 2021 (diff | hist) . . (+105) . . Main Page (→Fitting and docking)
- 06:28, 14 July 2021 (diff | hist) . . (+1,104) . . N 2021Voss Melting (Created page with "== Citation == Voss, J. M.; Harder, O. F.; Olshin, P. K.; Drabbels, M. & Lorenz, U. J. Rapid Melting and Revitrification as an Approach to Microsecond Time-Resolved Cryo-...") (current)
- 06:13, 14 July 2021 (diff | hist) . . (+122) . . Main Page (→Sample preparation)
- 09:40, 16 June 2021 (diff | hist) . . (+1,046) . . N 2021Jagota GoldNanoparticles (Created page with "== Citation == Jagota, M.; Townshend, R. J. L.; Kang, L.-W.; Bushnell, D. A.; Dror, R. O.; Kornberg, R. D. & Azubel, M. Gold nanoparticles and tilt pairs to assess protei...") (current)
- 09:39, 16 June 2021 (diff | hist) . . (+90) . . Main Page (→Sample preparation)
- 09:20, 16 June 2021 (diff | hist) . . (+2,171) . . N 2021Kojima Preferred (Created page with "== Citation == Kojima, R. & Yoshidome, T. A measure for the identification of preferred particle orientations in cryo-electron microscopy data: A simulation study. Biophysics...") (current)
- 09:18, 16 June 2021 (diff | hist) . . (+83) . . Main Page (→3D Alignment)
- 09:08, 16 June 2021 (diff | hist) . . (+1,599) . . N 2021Casasanta Microchip (Created page with "== Citation == Casasanta, M. A.; Jonaid, G. M.; Kaylor, L.; Luqiu, W. Y.; Solares, M. J.; Schroen, M. L.; Dearnaley, W. J.; Wilson, J.; Dukes, M. J. & Kelly, D. F. Microc...") (current)
- 09:03, 16 June 2021 (diff | hist) . . (+4) . . Main Page (→Sample preparation)
- 09:02, 16 June 2021 (diff | hist) . . (+144) . . Main Page (→Sample preparation)
- 08:52, 16 June 2021 (diff | hist) . . (+1,786) . . N 2020Venkatakrishnan MBIR (Created page with "== Citation == Venkatakrishnan, S.; Juneja, P. & O’Neill, H. Model-based Reconstruction for Single Particle Cryo-Electron Microscopy. 2020 54th Asilomar Conference on S...") (current)
- 08:51, 16 June 2021 (diff | hist) . . (+84) . . Main Page (→3D Reconstruction)
- 08:42, 16 June 2021 (diff | hist) . . (+1,827) . . N 2021Jiang MoAu (Created page with "== Citation == Jiang, X.; Xuan, S.; Zuckermann, R. N.; Glaeser, R. M.; Downing, K. H. & Balsara, N. P. Minimizing Crinkling of Soft Specimens Using Holey Gold Films on Mo...") (current)
- 08:41, 16 June 2021 (diff | hist) . . (+72) . . Main Page (→Sample preparation)
- 08:32, 16 June 2021 (diff | hist) . . (+2,207) . . N 2021Singla Measures (Created page with "== Citation == Singla, J.; White, K. L.; Stevens, R. C. & Alber, F. Assessment of scoring functions to rank the quality of 3D subtomogram clusters from cryo-electron tomo...") (current)
- 08:31, 16 June 2021 (diff | hist) . . (+103) . . Main Page (→Subtomogram analysis)
- 08:11, 16 June 2021 (diff | hist) . . (+1,993) . . N 2021Yang CLEM (Created page with "== Citation == Yang, J. E.; Larson, M. R.; Sibert, B. S.; Shrum, S. & Wright, E. R. CorRelator: Interactive software for real-time high precision cryo-correlative light a...") (current)
- 08:09, 16 June 2021 (diff | hist) . . (+68) . . Main Page (→Automated data collection)
- 08:42, 11 June 2021 (diff | hist) . . (+674) . . N 2021Bai Review (Created page with "== Citation == Bai, X.-c. Seeing atoms by single-particle Cryo-EM. Trends in biochemical sciences, 2021, 46, 253-254 == Abstract == Nakane et al. and Yip et al., for the f...") (current)
- 08:40, 11 June 2021 (diff | hist) . . (+88) . . Main Page (→Books and reviews)
- 08:35, 11 June 2021 (diff | hist) . . (+2,268) . . N 2021Thurber Automated (Created page with "== Citation == Thurber, K. R.; Yin, Y. & Tycko, R. Automated picking of amyloid fibrils from cryo-EM images for helical reconstruction with RELION. Journal of structural...") (current)
- 08:33, 11 June 2021 (diff | hist) . . (+108) . . Main Page (→Helical particles)
- 08:28, 11 June 2021 (diff | hist) . . (+2,342) . . N 2021Han LocalConstraints (Created page with "== Citation == Han, R.; Li, G. & Gao, X. Robust and ultrafast fiducial marker correspondence in electron tomography by a two-stage algorithm considering local constraints...") (current)
- 08:27, 11 June 2021 (diff | hist) . . (+96) . . Main Page (→Image alignment)
- 08:20, 11 June 2021 (diff | hist) . . (+1,745) . . N 2020Mullick SuperResolution (Created page with "== Citation == Mullick, B.; Wang, Y.; Yadav, P. & Farimani, A. B. Learning Super-Resolution Electron Density Map of Proteins using 3D U-Net. Proc. Machine Learning for St...") (current)
- 08:17, 11 June 2021 (diff | hist) . . (+82) . . Main Page (→Sharpening of high resolution information)
- 10:36, 10 June 2021 (diff | hist) . . (+1,562) . . N 2019Kidmose Namdinator (Created page with "== Citation == Kidmose, R. T.; Juhl, J.; Nissen, P.; Boesen, T.; Karlsen, J. L. & Pedersen, B. P. Namdinator: automatic molecular dynamics flexible fitting of structural...") (current)
- 10:33, 10 June 2021 (diff | hist) . . (+84) . . Main Page (→Fitting and docking)
- 08:58, 1 June 2021 (diff | hist) . . (+1,597) . . N 2008Rusu Interpolation (Created page with "== Citation == Rusu, M.; Birmanns, S. & Wriggers, W. Biomolecular pleiomorphism probed by spatial interpolation of coarse models. Bioinformatics, 2008, 24, 2460-2466 == Abs...") (current)
- 08:57, 1 June 2021 (diff | hist) . . (+120) . . Main Page (→Fitting and docking)
- 10:14, 27 May 2021 (diff | hist) . . (+2,034) . . N 2021Glaeser Fading (Created page with "== Citation == Glaeser, R. M.; Hagen, W. J.; Han, B.-G.; Henderson, R.; McMullan, G. & Russo, C. J. Defocus-dependent Thon-ring fading. Ultramicroscopy, 2021, 222, 113213...") (current)
- 10:09, 27 May 2021 (diff | hist) . . (+75) . . Main Page (→Image formation)
- 09:36, 27 May 2021 (diff | hist) . . (+1,968) . . N 2020Oroguchi (Created page with "== Citation == Oroguchi, T.; Oide, M.; Wakabayashi, T. & Nakasako, M. Assessment of Force Field Accuracy Using Cryogenic Electron Microscopy Data of Hyper-thermostable Gl...") (current)
- 09:35, 27 May 2021 (diff | hist) . . (+110) . . Main Page (→Fitting and docking)
- 09:26, 27 May 2021 (diff | hist) . . (+1,686) . . N 2021Beckers Interpretation (Created page with "== Citation == Beckers, M.; Mann, D. & Sachse, C. Structural interpretation of cryo-EM image reconstructions. Progress in biophysics and molecular biology, 2021, 160, 26-...") (current)
- 09:23, 27 May 2021 (diff | hist) . . (+113) . . Main Page (→Sharpening of high resolution information)
- 09:13, 27 May 2021 (diff | hist) . . (+1,631) . . N 2021Pfab DeepTracer (Created page with "== Citation == Pfab, J.; Phan, N. M. & Si, D. DeepTracer for fast de novo cryo-EM protein structure modeling and special studies on CoV-related complexes. PNAS, 2021, 118...") (current)
- 09:11, 27 May 2021 (diff | hist) . . (+104) . . Main Page (→Fitting and docking)
- 08:54, 27 May 2021 (diff | hist) . . (+1,506) . . N 2020Stabrin Transphire (Created page with "== Citation == Stabrin, M.; Schoenfeld, F.; Wagner, T.; Pospich, S.; Gatsogiannis, C. & Raunser, S. TranSPHIRE: automated and feedback-optimized on-the-fly processing for...") (current)
- 08:53, 27 May 2021 (diff | hist) . . (+123) . . Main Page (→Automated data collection)
- 08:27, 27 May 2021 (diff | hist) . . (+2,008) . . N 2020Nakane Atomic (Created page with "== Citation == Nakane, T.; Kotecha, A.; Sente, A.; McMullan, G.; Masiulis, S.; Brown, P. M.; Grigoras, I. T.; Malinauskaite, L.; Malinauskas, T.; Miehling, J. & others. S...") (current)
- 08:26, 27 May 2021 (diff | hist) . . (+84) . . Main Page (→Books and reviews)
- 08:18, 27 May 2021 (diff | hist) . . (+1,426) . . N 2020Tan ThroughGrid (Created page with "== Citation == Tan, Y. Z. & Rubinstein, J. L. Through-grid wicking enables high-speed cryoEM specimen preparation. Acta Crystallographica Section D: Structural Biology, 2...") (current)
- 08:14, 27 May 2021 (diff | hist) . . (+110) . . Main Page (→Sample preparation)
- 08:09, 27 May 2021 (diff | hist) . . (+1,890) . . N 2021Abrishami Localized (Created page with "== Citation == Abrishami, V.; Ilca, S. L.; Gomez-Blanco, J.; Rissanen, I.; de la Rosa-Trevín, J. M.; Reddy, V. S.; Carazo, J.-M. & Huiskonen, J. T. Localized reconstruct...") (current)
- 08:05, 27 May 2021 (diff | hist) . . (+143) . . Main Page (→3D Reconstruction)
- 07:57, 27 May 2021 (diff | hist) . . (+1,316) . . N 2021Punjani 3DVA (Created page with "== Citation == Punjani, A. & Fleet, D. J. 3D Variability Analysis: Resolving continuous flexibility and discrete heterogeneity from single particle cryo-EM. J. Structural Bio...") (current)
- 07:56, 27 May 2021 (diff | hist) . . (+74) . . Main Page (→3D Heterogeneity)
- 11:24, 26 May 2021 (diff | hist) . . (+1,964) . . N 2021Baldwin SCF (Created page with "== Citation == Baldwin, P. R. & Lyumkis, D. Tools for visualizing and analyzing Fourier space sampling in Cryo-EM. Progress in Biophysics and Molecular Biology, 2021, 160...") (current)
- 11:21, 26 May 2021 (diff | hist) . . (+84) . . Main Page (→Software)
- 11:15, 26 May 2021 (diff | hist) . . (+1,918) . . N 2020Bepler TopazDenoise (Created page with "== Citation == Bepler, T.; Kelley, K.; Noble, A. J. & Berger, B. Topaz-Denoise: general deep denoising models for cryoEM and cryoET. Nature communications, 2020, 11, 5208...") (current)
- 11:13, 26 May 2021 (diff | hist) . . (+93) . . Main Page (→2D Preprocessing)
- 11:05, 26 May 2021 (diff | hist) . . (+1,109) . . N 2021Chreifi FISE (Created page with "== Citation == Chreifi, G.; Chen, S. & Jensen, G. J. Rapid tilt-series method for cryo-electron tomography: Characterizing stage behavior during FISE acquisition. Journal...") (current)
- 11:03, 26 May 2021 (diff | hist) . . (+147) . . Main Page (→Automated data collection)
- 10:59, 26 May 2021 (diff | hist) . . (+728) . . N 2021Sorzano PCA (Created page with "== Citation == Sorzano, C. O. S. & Carazo, J. M. Principal component analysis is limited to low-resolution analysis in cryoEM. Acta Crystallographica Section D, 2021, 77...") (current)
- 10:56, 26 May 2021 (diff | hist) . . (+70) . . Main Page (→3D Heterogeneity)
- 09:47, 26 May 2021 (diff | hist) . . (+1,385) . . N 2019Eisenstein FISE (Created page with "== Citation == Eisenstein, F.; Danev, R. & Pilhofer, M. Improved applicability and robustness of fast cryo-electron tomography data acquisition. Journal of Structural Bio...") (current)
- 09:40, 26 May 2021 (diff | hist) . . (+129) . . Main Page (→Automated data collection)
- 09:38, 26 May 2021 (diff | hist) . . (+1,547) . . N 2018Ashtiani femtolitre (Created page with "== Citation == Ashtiani, D.; Venugopal, H.; Belousoff, M.; Spicer, B.; Mak, J.; Neild, A. & de Marco, A. Delivery of femtolitre droplets using surface acoustic wave based...") (current)
- 09:36, 26 May 2021 (diff | hist) . . (+151) . . Main Page (→Sample preparation)
- 18:14, 25 May 2021 (diff | hist) . . (+1,305) . . N 2018Palovcak Graphene (Created page with "== Citation == Palovcak, E.; Wang, F.; Zheng, S. Q.; Yu, Z.; Li, S.; Betegon, M.; Bulkley, D.; Agard, D. A. & Cheng, Y. A simple and robust procedure for preparing graphe...") (current)
- 18:13, 25 May 2021 (diff | hist) . . (+86) . . Main Page (→Sample preparation)
- 18:10, 25 May 2021 (diff | hist) . . (+1,940) . . N 2021Olek FDR (Created page with "== Citation == Olek, M. & Joseph, A. P. Cryo-EM Map--Based Model Validation Using the False Discovery Rate Approach. Frontiers in Molecular Biosciences, 2021, 8, 401 ==...") (current)
- 18:09, 25 May 2021 (diff | hist) . . (+111) . . Main Page (→Validation)
- 17:48, 25 May 2021 (diff | hist) . . (+1,544) . . N 2021Frechard Preparation (Created page with "== Citation == Frechard, A.; Sharov, G.; Werderer, M. & Schultz, P. Optimization of Sample Preparation for the Observation of Macromolecular Complexes by Electron (cryo-)...") (current)
- 17:47, 25 May 2021 (diff | hist) . . (+80) . . Main Page (→Sample preparation)
- 17:43, 25 May 2021 (diff | hist) . . (+2,377) . . N 2014Paavolainen Missing (Created page with "== Citation == Paavolainen, L.; Acar, E.; Tuna, U.; Peltonen, S.; Moriya, T.; Soonsawad, P.; Marjomäki, V.; Cheng, R. H. & Ruotsalainen, U. Compensation of missing w...") (current)
- 17:42, 25 May 2021 (diff | hist) . . (+79) . . Main Page (→3D reconstruction)
- 17:39, 25 May 2021 (diff | hist) . . (+1,713) . . N 2019Heymann Statistics (Created page with "== Citation == Heymann, J. B. Single-particle reconstruction statistics: a diagnostic tool in solving biomolecular structures by cryo-EM. Acta Crystallographica Section F: St...") (current)
- 17:37, 25 May 2021 (diff | hist) . . (+77) . . Main Page (→Resolution)
- 06:30, 6 May 2021 (diff | hist) . . (+1,465) . . N 2021Rheinberger IceThickness (Created page with "== Citation == Rheinberger, J.; Oostergetel, G.; Resch, G. P. & Paulino, C. Optimized cryo-EM data-acquisition workflow by sample-thickness determination. Acta crystallog...") (current)
- 06:28, 6 May 2021 (diff | hist) . . (+83) . . Main Page (→Automated data collection)
- 13:37, 29 April 2021 (diff | hist) . . (+1,619) . . N 2021Efremov ComaCorrected (Created page with "== Citation == Efremov, R. G. & Stroobants, A. Coma-corrected rapid single-particle cryo-EM data collection on the CRYO ARM 300. Acta Crystallographica Section D: Structu...") (current)
- 13:36, 29 April 2021 (diff | hist) . . (+128) . . Main Page (→Automated data collection)
- 13:26, 26 April 2021 (diff | hist) . . (+1,837) . . N 2021Kayama Multipurpose (Created page with "== Citation == Kayama, Y.; Burton-Smith, R. N.; Song, C.; Terahara, N.; Kato, T. & Murata, K. Below 3 Å structure of apoferritin using a multipurpose TEM with a side en...") (current)
- 13:24, 26 April 2021 (diff | hist) . . (+135) . . Main Page (→Automated data collection)
- 13:14, 26 April 2021 (diff | hist) . . (+1,429) . . N 2021Chojnowski quality (Created page with "== Citation == Chojnowski, G.; Sobolev, E.; Heuser, P. & Lamzin, V. S. The accuracy of protein models automatically built into cryo-EM maps with ARP/wARP. Acta crystallog...") (current)
- 13:13, 26 April 2021 (diff | hist) . . (+97) . . Main Page (→Fitting and docking)
- 05:45, 23 April 2021 (diff | hist) . . (+1,014) . . N 2021Han Vesper (Created page with "== Citation == Han, X.; Terashi, G.; Christoffer, C.; Chen, S. & Kihara, D. VESPER: global and local cryo-EM map alignment using local density vectors. Nature communicati...") (current)
- 05:44, 23 April 2021 (diff | hist) . . (+111) . . Main Page (→Fitting and docking)
- 09:49, 20 April 2021 (diff | hist) . . (+109) . . Main Page (→Online courses and Learning material)
- 10:00, 16 April 2021 (diff | hist) . . (+979) . . N 2021Titarenko LocalCorr (Created page with "== Citation == Titarenko, V. & Roseman, A. M. Theoretical and practical approaches to improve the performance of local correlation algorithms for volume data analysis and...") (current)
- 09:59, 16 April 2021 (diff | hist) . . (+102) . . Main Page (→Fitting and docking)
- 06:25, 16 April 2021 (diff | hist) . . (+1,833) . . N 2021Bouvette Bisect (Created page with "== Citation == Bouvette, J.; Liu, H.-F.; Du, X.; Zhou, Y.; Sikkema, A. P.; da Fonseca Rezende E Mello, J.; Klemm, B. P.; Huang, R.; Schaaper, R. M.; Borgnia, M. J. & Bart...") (current)
- 06:24, 16 April 2021 (diff | hist) . . (+155) . . Main Page (→Automated data collection)
- 15:33, 15 April 2021 (diff | hist) . . (-48) . . 2020Gupta MultiCryoGAN (current)
- 15:32, 15 April 2021 (diff | hist) . . (+1,593) . . N 2020Gupta MultiCryoGAN (Created page with "== Citation == Gupta, H.; Phan, T. H.; Yoo, J. & Unser, M. Multi-CryoGAN: Reconstruction of Continuous Conformations in Cryo-EM Using Generative Adversarial Networks. Eur...")
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