User contributions
From 3DEM-Methods
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- 06:27, 28 August 2023 (diff | hist) . . (+2,343) . . N 2023Wang Autoencoder (Created page with "== Citation == Wang, Xiangwen / Lu, Yonggang / Lin, Xianghong / Li, Jianwei / Zhang, Zequn. An Unsupervised Classification Algorithm for Heterogeneous Cryo-EM Projection Imag...") (current)
- 06:26, 28 August 2023 (diff | hist) . . (+87) . . Main Page (→3D Heterogeneity)
- 06:50, 25 August 2023 (diff | hist) . . (+2,707) . . N 2023Bromberg Complex (Created page with "== Citation == Bromberg, Raquel / Guo, Yirui / Borek, Dominika / Otwinowski, Zbyszek. CryoEM single particle reconstruction with a complex-valued particle stack. 2023. J. Str...") (current)
- 06:49, 25 August 2023 (diff | hist) . . (+102) . . Main Page (→Image formation)
- 05:49, 25 August 2023 (diff | hist) . . (+2,170) . . N 2023Last Ice (Created page with "== Citation == Last, Mart G. F. / Voortman, Lenard M. / Sharp, Thomas H. Measuring cryo-TEM sample thickness using reflected light microscopy and machine learning. 2023. J. S...") (current)
- 05:47, 25 August 2023 (diff | hist) . . (+106) . . Main Page (→Automated data collection)
- 06:04, 24 August 2023 (diff | hist) . . (+1,209) . . N 2023Chen GMM (Created page with "== Citation == Chen, Muyuan / Toader, Bogdan / Lederman, Roy. Integrating molecular models into CryoEM heterogeneity analysis using scalable high-resolution deep Gaussian mix...") (current)
- 06:03, 24 August 2023 (diff | hist) . . (+98) . . Main Page (→3D Heterogeneity)
- 05:52, 24 August 2023 (diff | hist) . . (+1,886) . . N 2023Herreros ZART (Created page with "== Citation == Herreros, D. / Kiska, J. / Ram\irez-Aportela, E. / Filipovic, J. / Carazo, J. M. / Sorzano, C. O. S. ZART: A Novel Multiresolution Reconstruction Algorithm wit...") (current)
- 05:51, 24 August 2023 (diff | hist) . . (+107) . . Main Page (→3D Reconstruction)
- 05:46, 24 August 2023 (diff | hist) . . (+1,570) . . N 2023Kim Review (Created page with "== Citation == Kim, Hannah Hyun-Sook / Uddin, Mostofa Rafid / Xu, Min / Chang, Yi-Wei. Computational methods toward unbiased pattern mining and structure determination in cry...") (current)
- 05:44, 24 August 2023 (diff | hist) . . (+87) . . Main Page (→Books and reviews)
- 17:05, 23 August 2023 (diff | hist) . . (+1,202) . . N 2023Toader Heterogeneity (Created page with "== Citation == Toader, Bogdan / Sigworth, Fred J. / Lederman, Roy R. Methods for Cryo-EM single particle reconstruction of macromolecules having continuous heterogeneity. 202...") (current)
- 17:04, 23 August 2023 (diff | hist) . . (+80) . . Main Page (→Books and reviews)
- 16:45, 23 August 2023 (diff | hist) . . (+1,656) . . N 2023Si DeNovo (Created page with "== Citation == Si, Dong / Chen, Jason / Nakamura, Andrew / Chang, Luca / Guan, Haowen. Smart de novo Macromolecular Structure Modeling from Cryo-EM Maps. 2023. J. Molecular B...") (current)
- 16:45, 23 August 2023 (diff | hist) . . (+73) . . Main Page (→Books and reviews)
- 09:58, 22 August 2023 (diff | hist) . . (+1,865) . . N 2023Liu AirWater (Created page with "== Citation == Liu, Nan / Wang, Hong-Wei. Better Cryo-EM Specimen Preparation: How to Deal with the Air--Water Interface? 2023. J. Molecular Biology, Vol. 435, No. 9, p. 1679...") (current)
- 09:57, 22 August 2023 (diff | hist) . . (+114) . . Main Page (→Sample preparation)
- 09:37, 22 August 2023 (diff | hist) . . (+1,420) . . N 2023Seitz Geometric (Created page with "== Citation == Seitz, Evan / Frank, Joachim / Schwander, Peter. Beyond ManifoldEM: geometric relationships between manifold embeddings of a continuum of 3D molecular structur...") (current)
- 09:36, 22 August 2023 (diff | hist) . . (+160) . . Main Page (→3D Heterogeneity)
- 07:55, 14 August 2023 (diff | hist) . . (+1,297) . . N 2023Zeng AITOM (Created page with "== Citation == Zeng, Xiangrui / Kahng, Anson / Xue, Liang / Mahamid, Julia / Chang, Yi-Wei / Xu, Min. High-throughput cryo-ET structural pattern mining by unsupervised deep i...") (current)
- 07:54, 14 August 2023 (diff | hist) . . (+116) . . Main Page (→Segmentation)
- 06:50, 14 August 2023 (diff | hist) . . (+1,187) . . N 2023Millan LL (Created page with "== Citation == Millán, Claudia / McCoy, Airlie J. / Terwilliger, Thomas C. / Read, Randy J. Likelihood-based docking of models into cryo-EM maps. 2023. Acta Crystallographic...") (current)
- 06:49, 14 August 2023 (diff | hist) . . (+89) . . Main Page (→Fitting and docking)
- 06:45, 14 August 2023 (diff | hist) . . (+1,451) . . N 2023Read LL (Created page with "== Citation == Read, Randy J. / Millán, Claudia / McCoy, Airlie J. / Terwilliger, Thomas C. Likelihood-based signal and noise analysis for docking of models into cryo-EM map...") (current)
- 06:44, 14 August 2023 (diff | hist) . . (+116) . . Main Page (→Fitting and docking)
- 07:07, 11 August 2023 (diff | hist) . . (+1,700) . . N 2023Dai CryoRes (Created page with "== Citation == Dai, M. / Dong, Z. / Xu, K. / Zhang, Q. C. CryoRes: Local Resolution Estimation ofCryo-EM Density Maps by Deep Learning. 2023. J. Molecular Biology, Vol. 435,...") (current)
- 07:05, 11 August 2023 (diff | hist) . . (+76) . . Main Page (→Resolution)
- 07:08, 10 August 2023 (diff | hist) . . (+1,847) . . N 2023Neselu IceThickness (Created page with "== Citation == Neselu, Kasahun / Wang, Bing / Rice, William J. / Potter, Clinton S. / Carragher, Bridget / Chua, Eugene Y. D. Measuring the effects of ice thickness on resolu...") (current)
- 07:07, 10 August 2023 (diff | hist) . . (+82) . . Main Page (→Sample preparation)
- 06:58, 10 August 2023 (diff | hist) . . (+1,555) . . N 2023Chen Joint (Created page with "== Citation == Chen, Yu-Xuan / Feng, Dagan / Shen, Hong-Bin. Cryo-EM image alignment: From pair-wise to joint with deep unsupervised difference learning. 2023. J. Structural...") (current)
- 06:58, 10 August 2023 (diff | hist) . . (+116) . . Main Page (→2D Classification and clustering)
- 06:34, 10 August 2023 (diff | hist) . . (+2,204) . . N 2023Huang ZSSR (Created page with "== Citation == Huang, Qinwen / Zhou, Ye / Liu, Hsuan-Fu / Bartesaghi, Alberto. Multiple-image super-resolution of cryo-electron micrographs based on deep internal learning. 2...") (current)
- 06:32, 10 August 2023 (diff | hist) . . (+99) . . Main Page (→2D Preprocessing)
- 06:55, 8 August 2023 (diff | hist) . . (+1,983) . . N 2023Kinman Analysis (Created page with "== Citation == Kinman, Laurel F. / Powell, Barrett M. / Zhong, Ellen D. / Berger, Bonnie / Davis, Joseph H. Uncovering structural ensembles from single-particle cryo-EM data...") (current)
- 06:55, 8 August 2023 (diff | hist) . . (+102) . . Main Page (→3D Heterogeneity)
- 06:28, 7 August 2023 (diff | hist) . . (+1,492) . . N 2023Amann TimeResolved (Created page with "== Citation == Amann, Sascha Josef / Keihsler, Demian / Bodrug, Tatyana / Brown, Nicholas G. / Haselbach, David. Frozen in time: analyzing molecular dynamics with time-resolv...") (current)
- 06:27, 7 August 2023 (diff | hist) . . (+74) . . Main Page (→Books and reviews)
- 06:22, 7 August 2023 (diff | hist) . . (+2,375) . . N 2022Burley PDB (Created page with "== Citation == Burley, Stephen K. / Berman, Helen M. / Chiu, Wah / Dai, Wei / Flatt, Justin W. / Hudson, Brian P. / Kaelber, Jason T. / Khare, Sagar D. / Kulczyk, Arkadiusz W...") (current)
- 06:21, 7 August 2023 (diff | hist) . . (+78) . . Main Page (→Books and reviews)
- 06:11, 7 August 2023 (diff | hist) . . (+2,034) . . N 2023Kim Ptolemy (Created page with "== Citation == Kim, Paul T. / Noble, Alex J. / Cheng, Anchi / Bepler, Tristan. Learning to automate cryo-electron microscopy data collection with Ptolemy. 2023. IUCrJ, Vol. 1...") (current)
- 06:10, 7 August 2023 (diff | hist) . . (+72) . . Main Page (→Automated data collection)
- 13:35, 26 July 2023 (diff | hist) . . (+2,711) . . N 2023Cheng Leginon (Created page with "== Citation == Cheng, Anchi / Kim, Paul T. / Kuang, Huihui / Mendez, Joshua H. / Chua, Eugene Y. D. / Maruthi, Kashyap / Wei, Hui / Sawh, Anjelique / Aragon, Mahira F. / Serb...") (current)
- 13:34, 26 July 2023 (diff | hist) . . (+74) . . Main Page (→Automated data collection)
- 10:14, 25 July 2023 (diff | hist) . . (+1,852) . . N 2023Liu AWI (Created page with "== Citation == Liu, Nan / Wang, Hong-Wei. Better Cryo-EM Specimen Preparation: How to Deal with the Air--Water Interface? 2023, J. Molecular Biology, Vol. 435, No. 9, p. 1679...") (current)
- 10:13, 25 July 2023 (diff | hist) . . (+66) . . Main Page (→Books and reviews)
- 09:58, 25 July 2023 (diff | hist) . . (+1,558) . . N 2023Schreiber charge (Created page with "== Citation == Schreiber, Makoto Tokoro / Maigné, Alan / Beleggia, Marco / Shibata, Satoshi / Wolf, Matthias. Temporal dynamics of charge buildup in cryo-electron microscopy...") (current)
- 09:53, 25 July 2023 (diff | hist) . . (+74) . . Main Page (→Image formation)
- 09:11, 25 July 2023 (diff | hist) . . (+1,482) . . N 2023Seifer RevisedSaxton (Created page with "== Citation == Seifer, Shahar. Sampling theory perspective on tomographic tilt increment schemes. 2023. Ultramicroscopy, Vol. 245, p. 113669 == Abstract == Given a limited...") (current)
- 09:10, 25 July 2023 (diff | hist) . . (+98) . . Main Page (→Collection geometry)
- 07:59, 25 July 2023 (diff | hist) . . (+2,104) . . N 2022Zhang DRVAE (Created page with "== Citation == Zhang, Dongxu / Yan, Yang / Huang, Yulin / Liu, Bowen / Zheng, Qingbing / Zhang, Jun / Xia, Ningshao. Unsupervised Cryo-EM Images Denoising and Clustering base...") (current)
- 07:58, 25 July 2023 (diff | hist) . . (+88) . . Main Page (→2D Classification and clustering)
- 09:08, 24 July 2023 (diff | hist) . . (+1,710) . . N 2023Terashi DAQrefine (Created page with "== Citation == Terashi, Genki / Wang, Xiao / Kihara, Daisuke. Protein model refinement for cryo-EM maps using AlphaFold2 and the DAQ score. 2023. Acta Crystallographica Secti...") (current)
- 09:07, 24 July 2023 (diff | hist) . . (+92) . . Main Page (→Fitting and docking)
- 08:42, 24 July 2023 (diff | hist) . . (+1,526) . . N 2023Zheng Ultraflat (Created page with "== Citation == Zheng, Liming / Liu, Nan / Gao, Xiaoyin / Zhu, Wenqing / Liu, Kun / Wu, Cang / Yan, Rui / Zhang, Jincan / Gao, Xin / Yao, Yating / others. Uniform thin ice on...") (current)
- 08:41, 24 July 2023 (diff | hist) . . (+85) . . Main Page (→Sample preparation)
- 07:57, 20 July 2023 (diff | hist) . . (+1,472) . . N 2022Bouvette SmartScope (Created page with "== Citation == Bouvette, Jonathan / Huang, Qinwen / Riccio, Amanda A. / Copeland, William C. / Bartesaghi, Alberto / Borgnia, Mario J. Automated systematic evaluation of cryo...") (current)
- 07:55, 20 July 2023 (diff | hist) . . (+56) . . Main Page (→Automated data collection)
- 06:56, 19 July 2023 (diff | hist) . . (+1,653) . . N 2023Tang Reweighting (Created page with "== Citation == Tang, Wai Shing / Silva-Sánchez, David / Giraldo-Barreto, Julian / Carpenter, Bob / Hanson, Sonya M. / Barnett, Alex H. / Thiede, Erik H. / Cossio, Pilar. Ens...") (current)
- 06:54, 19 July 2023 (diff | hist) . . (+87) . . Main Page (→3D Heterogeneity)
- 06:44, 19 July 2023 (diff | hist) . . (+1,422) . . N 2023Sharon Enhancement (Created page with "== Citation == Sharon, Guy / Shkolnisky, Yoel / Bendory, Tamir. Signal enhancement for two-dimensional cryo-EM data processing. 2023. Biological Imaging, Vol. 3, p. e7 == A...") (current)
- 06:43, 19 July 2023 (diff | hist) . . (+81) . . Main Page (→2D Preprocessing)
- 06:29, 19 July 2023 (diff | hist) . . (+1,430) . . N 2022Wang Thunder (Created page with "== Citation == Wang, Zhao / Ruan, Huabin / Yang, Guangwen / Li, Xueming. Parallelizing the cryo-EM structure determination in THUNDER using GPU cluster. 2022. Engineering Rep...") (current)
- 06:28, 19 July 2023 (diff | hist) . . (+79) . . Main Page (→3D Alignment)
- 07:13, 18 July 2023 (diff | hist) . . (+1,220) . . N 2022Guaita Review (Created page with "== Citation == Guaita, Margherita / Watters, Scott C. / Loerch, Sarah. Recent advances and current trends in cryo-electron microscopy. 2022. Current opinion in structural bio...") (current)
- 07:12, 18 July 2023 (diff | hist) . . (+101) . . Main Page (→Books and reviews)
- 07:08, 18 July 2023 (diff | hist) . . (+1,211) . . N 2022Metskas STA (Created page with "== Citation == Metskas, Lauren Ann / Wilfong, Rosalie / Jensen, Grant J. Subtomogram averaging for biophysical analysis and supramolecular context. 2022. J. Structural Biolog...") (current)
- 07:06, 18 July 2023 (diff | hist) . . (+78) . . Main Page (→Subtomogram analysis)
- 14:09, 4 July 2023 (diff | hist) . . (-1) . . Main Page (→Image alignment)
- 14:05, 4 July 2023 (diff | hist) . . (+1,622) . . N 2022Zheng Aretomo (Created page with "== Citation == Zheng, Shawn / Wolff, Georg / Greenan, Garrett / Chen, Zhen / Faas, Frank G. A. / Bárcena, Montserrat / Koster, Abraham J. / Cheng, Yifan / Agard, David A. Ar...") (current)
- 14:04, 4 July 2023 (diff | hist) . . (+89) . . Main Page (→Image alignment)
- 13:55, 4 July 2023 (diff | hist) . . (+1,476) . . N 2022Liedtke Review (Created page with "== Citation == Liedtke, Janine / Depelteau, Jamie S. / Briegel, Ariane. How advances in cryo-electron tomography have contributed to our current view of bacterial cell biolog...") (current)
- 13:54, 4 July 2023 (diff | hist) . . (+96) . . Main Page (→Books and reviews)
- 13:49, 4 July 2023 (diff | hist) . . (+1,336) . . N 2022Donnat GAN (Created page with "== Citation == Donnat, Claire / Levy, Axel / Poitevin, Frederic / Zhong, Ellen D. / Miolane, Nina. Deep generative modeling for volume reconstruction in cryo-electron microsc...") (current)
- 13:48, 4 July 2023 (diff | hist) . . (+87) . . Main Page (→Books and reviews)
- 09:02, 28 June 2023 (diff | hist) . . (+3,038) . . N 2022Urzhumtsev Direct (Created page with "== Citation == Urzhumtsev, Alexandre G. / Urzhumtseva, Ludmila M. / Lunin, Vladimir Y. Direct calculation of cryo-EM and crystallographic model maps for real-space refinement...") (current)
- 09:00, 28 June 2023 (diff | hist) . . (+90) . . Main Page (→Fitting and docking)
- 08:35, 28 June 2023 (diff | hist) . . (+1,855) . . N 2022Beton Fitting (Created page with "== Citation == Beton, Joseph George / Cragnolini, Tristan / Kaleel, Manaz / Mulvaney, Thomas / Sweeney, Aaron / Topf, Maya. Integrating model simulation tools and cryo-electr...") (current)
- 08:34, 28 June 2023 (diff | hist) . . (+63) . . Main Page (→Books and reviews)
- 07:37, 28 June 2023 (diff | hist) . . (+1,690) . . N 2023Heymann Ewald (Created page with "== Citation == Heymann, J. Bernard. The Ewald sphere/focus gradient does not limit the resolution of cryoEM reconstructions. 2023. J. Structural Biology: X, Vol. 7, p. 100083...") (current)
- 07:36, 28 June 2023 (diff | hist) . . (+127) . . Main Page (→Image formation)
- 07:17, 28 June 2023 (diff | hist) . . (+1,783) . . N 2022Sorzano Validation (Created page with "== Citation == Sorzano, C. O. S. / Vilas, J. L. / Ram\irez-Aportela, Erney / Krieger, J. / Del Hoyo, D. / de Isidro-Gómez, F. / Herreros, David / Fernandez-Giménez, Estrell...") (current)
- 07:08, 28 June 2023 (diff | hist) . . (+81) . . Main Page (→Validation)
- 09:10, 26 June 2023 (diff | hist) . . (+1,649) . . N 2022Liu Isonet (Created page with "== Citation == Liu, Yun-Tao / Zhang, Heng / Wang, Hui / Tao, Chang-Lu / Bi, Guo-Qiang / Zhou, Z. Hong. Isotropic reconstruction for electron tomography with deep learning. 20...") (current)
- 09:10, 26 June 2023 (diff | hist) . . (+82) . . Main Page (→Noise reduction)
- 08:47, 26 June 2023 (diff | hist) . . (+1,240) . . N 2022Urzhumtsev XrayEM (Created page with "== Citation == Urzhumtsev, Alexandre / Lunin, Vladimir Y. Analytic modeling of inhomogeneous-resolution maps in cryo-electron microscopy and crystallography. 2022. IUCrJ, Vol...") (current)
- 08:32, 26 June 2023 (diff | hist) . . (+97) . . Main Page (→Fitting and docking)
- 13:06, 23 June 2023 (diff | hist) . . (+1,065) . . N 2022Bepler Smart (Created page with "== Citation == Bepler, Tristan / Borst, Andrew J. / Bouvette, Jonathan / Cannone, Giuseppe / Chen, Songye / Cheng, Anchi / Cheng, Ao / Fan, Quanfu / Grollios, Fanis / Gupta,...") (current)
- 13:02, 23 June 2023 (diff | hist) . . (+60) . . Main Page (→Automated data collection)
- 09:34, 23 June 2023 (diff | hist) . . (+1,454) . . N 2023Marshall PCA (Created page with "== Citation == Marshall, Nicholas F. / Mickelin, Oscar / Shi, Yunpeng / Singer, Amit. Fast principal component analysis for cryo-electron microscopy images. 2023. Biological...") (current)
- 09:34, 23 June 2023 (diff | hist) . . (+73) . . Main Page (→2D Preprocessing)
- 08:44, 23 June 2023 (diff | hist) . . (+1,736) . . N 2022Garcia DeepHand (Created page with "== Citation == Garcia Condado, J. / Muñoz-Barrutia, A. / Sorzano, C. O. S. Automatic determination of the handedness of Single-Particle maps of macromolecules solved by Cryo...") (current)
- 08:35, 23 June 2023 (diff | hist) . . (+95) . . Main Page (→Validation)
- 08:15, 23 June 2023 (diff | hist) . . (+1,367) . . N 2022Havelkova regularization (Created page with "== Citation == Havelková, Eva / Hnětynková, Iveta. Iterative hybrid regularization for extremely noisy full models in single particle analysis. 2023. Linear Algebra and it...") (current)
- 08:13, 23 June 2023 (diff | hist) . . (+104) . . Main Page (→3D Reconstruction)
- 09:21, 16 June 2023 (diff | hist) . . (+1,686) . . N 2022Levy CryoFire (Created page with "== Citation == Levy, Axel / Wetzstein, Gordon / Martel, Julien N. P. / Poitevin, Frederic / Zhong, Ellen Amortized Inference for Heterogeneous Reconstruction in Cryo-EM 202...") (current)
- 09:21, 16 June 2023 (diff | hist) . . (+110) . . Main Page (→3D Heterogeneity)
- 05:59, 15 June 2023 (diff | hist) . . (+1,703) . . N 2023Bendory Autocorrelation (Created page with "== Citation == Bendory, Tamir / Khoo, Yuehaw / Kileel, Joe / Mickelin, Oscar / Singer, Amit. Autocorrelation analysis for cryo-EM with sparsity constraints: Improved sample c...") (current)
- 05:55, 15 June 2023 (diff | hist) . . (+123) . . Main Page (→3D Reconstruction)
- 05:43, 15 June 2023 (diff | hist) . . (+1,814) . . N 2022Hohle Ice (Created page with "== Citation == Hohle, Markus Matthias / Lammens, Katja / Gut, Fabian / Wang, Bingzhi / Kahler, Sophia / Kugler, Kathrin / Till, Michael / Beckmann, Roland / Hopfner, Karl-Pet...") (current)
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