User contributions
From 3DEM-Methods
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- 19:27, 30 November 2023 (diff | hist) . . (+103) . . Main Page (→Online courses and Learning material)
- 07:31, 19 October 2023 (diff | hist) . . (+1,554) . . N 2023Rangan AbInitio (Created page with "== Citation == Rangan, Aaditya V. / Greengard, Leslie. Robust ab initio solution of the cryo-EM reconstruction problem at low resolution with small data sets. 2023. J. Struct...") (current)
- 07:14, 19 October 2023 (diff | hist) . . (+73) . . Main Page (→3D Reconstruction)
- 07:09, 19 October 2023 (diff | hist) . . (+1,158) . . N 2023Han Sample (Created page with "== Citation == Han, Bong-Gyoon / Avila-Sakar, Agustin / Remis, Jonathan / Glaeser, Robert M. Challenges in making ideal cryo-EM samples. 2023. Current Opinion in Structural B...") (current)
- 07:06, 19 October 2023 (diff | hist) . . (+79) . . Main Page (→Sample preparation)
- 07:39, 26 September 2023 (diff | hist) . . (+1,322) . . N 2023Lucas Structureome (Created page with "== Citation == Lucas, Bronwyn A. Visualizing everything, everywhere, all at once: Cryo-EM and the new field of structureomics. 2023. Current Opinion in Structural Biology, Vo...") (current)
- 07:38, 26 September 2023 (diff | hist) . . (+122) . . Main Page (→Books and reviews)
- 08:22, 22 September 2023 (diff | hist) . . (+1,504) . . N 2023Maddhuri EMGan (Created page with "== Citation == Maddhuri Venkata Subramaniya, Sai Raghavendra / Terashi, Genki / Kihara, Daisuke. Enhancing cryo-EM maps with 3D deep generative networks for assisting protein...") (current)
- 08:12, 22 September 2023 (diff | hist) . . (+74) . . Main Page (→Sharpening of high resolution information)
- 08:08, 21 September 2023 (diff | hist) . . (+1,775) . . N 2023Blau FittingML (Created page with "== Citation == Blau, Christian / Yvonnesdotter, Linnea / Lindahl, Erik. Gentle and fast all-atom model refinement to cryo-EM densities via a maximum likelihood approach. 2023...") (current)
- 08:07, 21 September 2023 (diff | hist) . . (+96) . . Main Page (→Fitting and docking)
- 07:59, 21 September 2023 (diff | hist) . . (+1,453) . . N 2023Tang Conformational (Created page with "== Citation == Tang, Wai Shing / Zhong, Ellen D. / Hanson, Sonya M. / Thiede, Erik H. / Cossio, Pilar. Conformational heterogeneity and probability distributions from single-...") (current)
- 07:58, 21 September 2023 (diff | hist) . . (+113) . . Main Page (→Books and reviews)
- 07:51, 21 September 2023 (diff | hist) . . (+1,608) . . N 2023Short MRC2020 (Created page with "== Citation == Short, J. M. / Palmer, C. M. / Burnley, T. / Winn, M. D. / Zhang, Q. / Venkataram Prasad, B. V. / Chen, S. / Crowther, R. A. / Unwin, P. N. T. / Henderson, R....") (current)
- 07:50, 21 September 2023 (diff | hist) . . (+110) . . Main Page (→Software)
- 06:38, 20 September 2023 (diff | hist) . . (+2,741) . . N 2023Conesa Scipion3 (Created page with "== Citation == Conesa, Pablo / Fonseca, Yunior C. / de la Morena, Jorge Jiménez / Sharov, Grigory / de la Rosa-Trev\in, Jose Miguel / Cuervo, Ana / Mena, Alberto Garc\ia / d...") (current)
- 06:35, 20 September 2023 (diff | hist) . . (+80) . . Main Page (→Software)
- 06:12, 20 September 2023 (diff | hist) . . (+1,571) . . N 2023Genthe PickYolo (Created page with "== Citation == Genthe, Erik / Miletic, Sean / Tekkali, Indira / James, Rory Hennell / Marlovits, Thomas C. / Heuser, Philipp. PickYOLO: Fast deep learning particle detector f...") (current)
- 06:10, 20 September 2023 (diff | hist) . . (+73) . . Main Page (→Subtomogram analysis)
- 07:07, 14 September 2023 (diff | hist) . . (+1,799) . . N 2023Vuillemot MDTOMO (Created page with "== Citation == Vuillemot, Rémi / Rouiller, Isabelle / Jonić, Slavica. MDTOMO method for continuous conformational variability analysis in cryo electron subtomograms based o...") (current)
- 07:06, 14 September 2023 (diff | hist) . . (+109) . . Main Page (→Molecular 3D dynamics)
- 08:59, 13 September 2023 (diff | hist) . . (+1,635) . . N 2023Dhakal CryoPPP (Created page with "== Citation == Dhakal, Ashwin / Gyawali, Rajan / Wang, Liguo / Cheng, Jianlin. A large expert-curated cryo-EM image dataset for machine learning protein particle picking. 202...") (current)
- 08:54, 13 September 2023 (diff | hist) . . (+79) . . Main Page (→Automatic particle picking)
- 08:45, 13 September 2023 (diff | hist) . . (-118) . . Main Page (→Fitting and docking)
- 08:43, 13 September 2023 (diff | hist) . . (+118) . . Main Page (→Fitting and docking)
- 07:14, 11 September 2023 (diff | hist) . . (+1,613) . . N 2023Herreros Hub (Created page with "== Citation == Herreros, D. / Krieger, J. M. / Fonseca, Y. / Conesa, P. / Harastani, M. / Vuillemot, R. / Hamitouche, I. / Serrano Gutiérrez, R. / Gragera, M. / Melero, R. /...") (current)
- 07:14, 11 September 2023 (diff | hist) . . (+108) . . Main Page (→3D Heterogeneity)
- 16:22, 7 September 2023 (diff | hist) . . (+1,913) . . N 2017Barnett Marching (Created page with "== Citation == Barnett, Alex / Greengard, Leslie / Pataki, Andras / Spivak, Marina. Rapid solution of the cryo-EM reconstruction problem by frequency marching. 2017. SIAM J....") (current)
- 16:21, 7 September 2023 (diff | hist) . . (+84) . . Main Page (→3D Reconstruction)
- 12:17, 6 September 2023 (diff | hist) . . (+1,512) . . N 2023Seitz ESPER (Created page with "== Citation == Seitz, Evan / Acosta-Reyes, Francisco / Maji, Suvrajit / Schwander, Peter / Frank, Joachim. Recovery of conformational continuum from single-particle Cryo-EM i...") (current)
- 12:12, 6 September 2023 (diff | hist) . . (+131) . . Main Page (→3D Heterogeneity)
- 12:03, 6 September 2023 (diff | hist) . . (+1,670) . . N 2023Dsouza benchmark (Created page with "== Citation == Dsouza, Raison / Mashayekhi, Ghoncheh / Etemadpour, Roshanak / Schwander, Peter / Ourmazd, Abbas. Energy landscapes from cryo-EM snapshots: a benchmarking stud...") (current)
- 12:01, 6 September 2023 (diff | hist) . . (+108) . . Main Page (→3D Heterogeneity)
- 11:55, 6 September 2023 (diff | hist) . . (+1,698) . . N 2008Orzechowski Flexible (Created page with "== Citation == Orzechowski, Marek / Tama, Florence. Flexible fitting of high-resolution x-ray structures into cryoelectron microscopy maps using biased molecular dynamics sim...") (current)
- 11:51, 6 September 2023 (diff | hist) . . (+94) . . Main Page (→Fitting and docking)
- 12:15, 1 September 2023 (diff | hist) . . (+1,605) . . N 2023He EMReady (Created page with "== Citation == He, Jiahua / Li, Tao / Huang, Sheng-You. Improvement of cryo-EM maps by simultaneous local and non-local deep learning. 2023. Nature Communications, Vol. 14, N...") (current)
- 12:14, 1 September 2023 (diff | hist) . . (+101) . . Main Page (→Sharpening of high resolution information)
- 16:03, 31 August 2023 (diff | hist) . . (+866) . . N 2023Vilas FSO (Created page with "== Citation == Vilas, Jose-Luis / Tagare, Hemant D. New measures of anisotropy of cryo-EM maps. 2023. Nature Methods, 20, p. 1021-1024 == Abstract == We propose two new me...") (current)
- 16:02, 31 August 2023 (diff | hist) . . (+81) . . Main Page (→Resolution)
- 15:59, 31 August 2023 (diff | hist) . . (+1,598) . . N 2023Zhang REST (Created page with "== Citation == Zhang, Haonan / Li, Yan / Liu, Yanan / Li, Dongyu / Wang, Lin / Song, Kai / Bao, Keyan / Zhu, Ping. A method for restoring signals and revealing individual mac...") (current)
- 15:57, 31 August 2023 (diff | hist) . . (+81) . . Main Page (→Missing-wedge correction)
- 10:14, 30 August 2023 (diff | hist) . . (+1,417) . . N 2023Reggiano MEDIC (Created page with "== Citation == Reggiano, Gabriella / Lugmayr, Wolfgang / Farrell, Daniel / Marlovits, Thomas C. / DiMaio, Frank. Residue-level error detection in cryoelectron microscopy mode...") (current)
- 10:12, 30 August 2023 (diff | hist) . . (+80) . . Main Page (→Fitting and docking)
- 06:57, 29 August 2023 (diff | hist) . . (+1,529) . . N 2023Chang CryoFold (Created page with "== Citation == Chang, Liwei / Mondal, Arup / MacCallum, Justin L. / Perez, Alberto. CryoFold 2.0: Cryo-EM Structure Determination with MELD. 2023. The J. of Physical Chemistr...") (current)
- 06:57, 29 August 2023 (diff | hist) . . (+106) . . Main Page (→Fitting and docking)
- 06:45, 28 August 2023 (diff | hist) . . (+2,300) . . N 2023Matsumoto DEFmap (Created page with "== Citation == Matsumoto, Shigeyuki / Ishida, Shoichi / Terayama, Kei / Okuno, Yasuhshi. Quantitative analysis of protein dynamics using a deep learning technique combined wi...") (current)
- 06:44, 28 August 2023 (diff | hist) . . (0) . . Main Page (→3D Heterogeneity)
- 06:43, 28 August 2023 (diff | hist) . . (+114) . . Main Page (→3D Heterogeneity)
- 06:35, 28 August 2023 (diff | hist) . . (+1,521) . . N 2023Punjani 3DFlex (Created page with "== Citation == Punjani, Ali / Fleet, David J. 3DFlex: determining structure and motion of flexible proteins from cryo-EM. 2023. Nature Methods, Vol. 20, p. 860-870 == Abstr...") (current)
- 06:34, 28 August 2023 (diff | hist) . . (+80) . . Main Page (→3D Heterogeneity)
- 06:27, 28 August 2023 (diff | hist) . . (+2,343) . . N 2023Wang Autoencoder (Created page with "== Citation == Wang, Xiangwen / Lu, Yonggang / Lin, Xianghong / Li, Jianwei / Zhang, Zequn. An Unsupervised Classification Algorithm for Heterogeneous Cryo-EM Projection Imag...") (current)
- 06:26, 28 August 2023 (diff | hist) . . (+87) . . Main Page (→3D Heterogeneity)
- 06:50, 25 August 2023 (diff | hist) . . (+2,707) . . N 2023Bromberg Complex (Created page with "== Citation == Bromberg, Raquel / Guo, Yirui / Borek, Dominika / Otwinowski, Zbyszek. CryoEM single particle reconstruction with a complex-valued particle stack. 2023. J. Str...") (current)
- 06:49, 25 August 2023 (diff | hist) . . (+102) . . Main Page (→Image formation)
- 05:49, 25 August 2023 (diff | hist) . . (+2,170) . . N 2023Last Ice (Created page with "== Citation == Last, Mart G. F. / Voortman, Lenard M. / Sharp, Thomas H. Measuring cryo-TEM sample thickness using reflected light microscopy and machine learning. 2023. J. S...") (current)
- 05:47, 25 August 2023 (diff | hist) . . (+106) . . Main Page (→Automated data collection)
- 06:04, 24 August 2023 (diff | hist) . . (+1,209) . . N 2023Chen GMM (Created page with "== Citation == Chen, Muyuan / Toader, Bogdan / Lederman, Roy. Integrating molecular models into CryoEM heterogeneity analysis using scalable high-resolution deep Gaussian mix...") (current)
- 06:03, 24 August 2023 (diff | hist) . . (+98) . . Main Page (→3D Heterogeneity)
- 05:52, 24 August 2023 (diff | hist) . . (+1,886) . . N 2023Herreros ZART (Created page with "== Citation == Herreros, D. / Kiska, J. / Ram\irez-Aportela, E. / Filipovic, J. / Carazo, J. M. / Sorzano, C. O. S. ZART: A Novel Multiresolution Reconstruction Algorithm wit...") (current)
- 05:51, 24 August 2023 (diff | hist) . . (+107) . . Main Page (→3D Reconstruction)
- 05:46, 24 August 2023 (diff | hist) . . (+1,570) . . N 2023Kim Review (Created page with "== Citation == Kim, Hannah Hyun-Sook / Uddin, Mostofa Rafid / Xu, Min / Chang, Yi-Wei. Computational methods toward unbiased pattern mining and structure determination in cry...") (current)
- 05:44, 24 August 2023 (diff | hist) . . (+87) . . Main Page (→Books and reviews)
- 17:05, 23 August 2023 (diff | hist) . . (+1,202) . . N 2023Toader Heterogeneity (Created page with "== Citation == Toader, Bogdan / Sigworth, Fred J. / Lederman, Roy R. Methods for Cryo-EM single particle reconstruction of macromolecules having continuous heterogeneity. 202...") (current)
- 17:04, 23 August 2023 (diff | hist) . . (+80) . . Main Page (→Books and reviews)
- 16:45, 23 August 2023 (diff | hist) . . (+1,656) . . N 2023Si DeNovo (Created page with "== Citation == Si, Dong / Chen, Jason / Nakamura, Andrew / Chang, Luca / Guan, Haowen. Smart de novo Macromolecular Structure Modeling from Cryo-EM Maps. 2023. J. Molecular B...") (current)
- 16:45, 23 August 2023 (diff | hist) . . (+73) . . Main Page (→Books and reviews)
- 09:58, 22 August 2023 (diff | hist) . . (+1,865) . . N 2023Liu AirWater (Created page with "== Citation == Liu, Nan / Wang, Hong-Wei. Better Cryo-EM Specimen Preparation: How to Deal with the Air--Water Interface? 2023. J. Molecular Biology, Vol. 435, No. 9, p. 1679...") (current)
- 09:57, 22 August 2023 (diff | hist) . . (+114) . . Main Page (→Sample preparation)
- 09:37, 22 August 2023 (diff | hist) . . (+1,420) . . N 2023Seitz Geometric (Created page with "== Citation == Seitz, Evan / Frank, Joachim / Schwander, Peter. Beyond ManifoldEM: geometric relationships between manifold embeddings of a continuum of 3D molecular structur...") (current)
- 09:36, 22 August 2023 (diff | hist) . . (+160) . . Main Page (→3D Heterogeneity)
- 07:55, 14 August 2023 (diff | hist) . . (+1,297) . . N 2023Zeng AITOM (Created page with "== Citation == Zeng, Xiangrui / Kahng, Anson / Xue, Liang / Mahamid, Julia / Chang, Yi-Wei / Xu, Min. High-throughput cryo-ET structural pattern mining by unsupervised deep i...") (current)
- 07:54, 14 August 2023 (diff | hist) . . (+116) . . Main Page (→Segmentation)
- 06:50, 14 August 2023 (diff | hist) . . (+1,187) . . N 2023Millan LL (Created page with "== Citation == Millán, Claudia / McCoy, Airlie J. / Terwilliger, Thomas C. / Read, Randy J. Likelihood-based docking of models into cryo-EM maps. 2023. Acta Crystallographic...") (current)
- 06:49, 14 August 2023 (diff | hist) . . (+89) . . Main Page (→Fitting and docking)
- 06:45, 14 August 2023 (diff | hist) . . (+1,451) . . N 2023Read LL (Created page with "== Citation == Read, Randy J. / Millán, Claudia / McCoy, Airlie J. / Terwilliger, Thomas C. Likelihood-based signal and noise analysis for docking of models into cryo-EM map...") (current)
- 06:44, 14 August 2023 (diff | hist) . . (+116) . . Main Page (→Fitting and docking)
- 07:07, 11 August 2023 (diff | hist) . . (+1,700) . . N 2023Dai CryoRes (Created page with "== Citation == Dai, M. / Dong, Z. / Xu, K. / Zhang, Q. C. CryoRes: Local Resolution Estimation ofCryo-EM Density Maps by Deep Learning. 2023. J. Molecular Biology, Vol. 435,...") (current)
- 07:05, 11 August 2023 (diff | hist) . . (+76) . . Main Page (→Resolution)
- 07:08, 10 August 2023 (diff | hist) . . (+1,847) . . N 2023Neselu IceThickness (Created page with "== Citation == Neselu, Kasahun / Wang, Bing / Rice, William J. / Potter, Clinton S. / Carragher, Bridget / Chua, Eugene Y. D. Measuring the effects of ice thickness on resolu...") (current)
- 07:07, 10 August 2023 (diff | hist) . . (+82) . . Main Page (→Sample preparation)
- 06:58, 10 August 2023 (diff | hist) . . (+1,555) . . N 2023Chen Joint (Created page with "== Citation == Chen, Yu-Xuan / Feng, Dagan / Shen, Hong-Bin. Cryo-EM image alignment: From pair-wise to joint with deep unsupervised difference learning. 2023. J. Structural...") (current)
- 06:58, 10 August 2023 (diff | hist) . . (+116) . . Main Page (→2D Classification and clustering)
- 06:34, 10 August 2023 (diff | hist) . . (+2,204) . . N 2023Huang ZSSR (Created page with "== Citation == Huang, Qinwen / Zhou, Ye / Liu, Hsuan-Fu / Bartesaghi, Alberto. Multiple-image super-resolution of cryo-electron micrographs based on deep internal learning. 2...") (current)
- 06:32, 10 August 2023 (diff | hist) . . (+99) . . Main Page (→2D Preprocessing)
- 06:55, 8 August 2023 (diff | hist) . . (+1,983) . . N 2023Kinman Analysis (Created page with "== Citation == Kinman, Laurel F. / Powell, Barrett M. / Zhong, Ellen D. / Berger, Bonnie / Davis, Joseph H. Uncovering structural ensembles from single-particle cryo-EM data...") (current)
- 06:55, 8 August 2023 (diff | hist) . . (+102) . . Main Page (→3D Heterogeneity)
- 06:28, 7 August 2023 (diff | hist) . . (+1,492) . . N 2023Amann TimeResolved (Created page with "== Citation == Amann, Sascha Josef / Keihsler, Demian / Bodrug, Tatyana / Brown, Nicholas G. / Haselbach, David. Frozen in time: analyzing molecular dynamics with time-resolv...") (current)
- 06:27, 7 August 2023 (diff | hist) . . (+74) . . Main Page (→Books and reviews)
- 06:22, 7 August 2023 (diff | hist) . . (+2,375) . . N 2022Burley PDB (Created page with "== Citation == Burley, Stephen K. / Berman, Helen M. / Chiu, Wah / Dai, Wei / Flatt, Justin W. / Hudson, Brian P. / Kaelber, Jason T. / Khare, Sagar D. / Kulczyk, Arkadiusz W...") (current)
- 06:21, 7 August 2023 (diff | hist) . . (+78) . . Main Page (→Books and reviews)
- 06:11, 7 August 2023 (diff | hist) . . (+2,034) . . N 2023Kim Ptolemy (Created page with "== Citation == Kim, Paul T. / Noble, Alex J. / Cheng, Anchi / Bepler, Tristan. Learning to automate cryo-electron microscopy data collection with Ptolemy. 2023. IUCrJ, Vol. 1...") (current)
- 06:10, 7 August 2023 (diff | hist) . . (+72) . . Main Page (→Automated data collection)
- 13:35, 26 July 2023 (diff | hist) . . (+2,711) . . N 2023Cheng Leginon (Created page with "== Citation == Cheng, Anchi / Kim, Paul T. / Kuang, Huihui / Mendez, Joshua H. / Chua, Eugene Y. D. / Maruthi, Kashyap / Wei, Hui / Sawh, Anjelique / Aragon, Mahira F. / Serb...") (current)
- 13:34, 26 July 2023 (diff | hist) . . (+74) . . Main Page (→Automated data collection)
- 10:14, 25 July 2023 (diff | hist) . . (+1,852) . . N 2023Liu AWI (Created page with "== Citation == Liu, Nan / Wang, Hong-Wei. Better Cryo-EM Specimen Preparation: How to Deal with the Air--Water Interface? 2023, J. Molecular Biology, Vol. 435, No. 9, p. 1679...") (current)
- 10:13, 25 July 2023 (diff | hist) . . (+66) . . Main Page (→Books and reviews)
- 09:58, 25 July 2023 (diff | hist) . . (+1,558) . . N 2023Schreiber charge (Created page with "== Citation == Schreiber, Makoto Tokoro / Maigné, Alan / Beleggia, Marco / Shibata, Satoshi / Wolf, Matthias. Temporal dynamics of charge buildup in cryo-electron microscopy...") (current)
- 09:53, 25 July 2023 (diff | hist) . . (+74) . . Main Page (→Image formation)
- 09:11, 25 July 2023 (diff | hist) . . (+1,482) . . N 2023Seifer RevisedSaxton (Created page with "== Citation == Seifer, Shahar. Sampling theory perspective on tomographic tilt increment schemes. 2023. Ultramicroscopy, Vol. 245, p. 113669 == Abstract == Given a limited...") (current)
- 09:10, 25 July 2023 (diff | hist) . . (+98) . . Main Page (→Collection geometry)
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