2002Frangakis Template

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Frangakis AS, Bohm J, Forster F, Nickell S, Nicastro D, Typke D, Hegerl R, Baumeister W (2002) Identification of macromolecular complexes in cryoelectron tomograms of phantom cells. Proc Natl Acad Sci USA 99:14153–14158

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Electron tomograms of intact frozen-hydrated cells are essentially three-dimensional images of the entire proteome of the cell, and they depict the whole network of macromolecular interactions. However, this information is not easily accessible because of the poor signal-to-noise ratio of the tomograms and the crowded nature of the cytoplasm. Here, we describe a template matching algorithm that is capable of detecting and identifying macromolecules in tomographic volumes in a fully automated manner. The algorithm is based on nonlinear cross correlation and incorporates elements of multivariate statistical analysis. Phantom cells, i.e., lipid vesicles filled with macromolecules, provide a realistic experimental scenario for an assessment of the fidelity of this approach. At the current resolution of approximately 4 nm, macromolecules in the size range of 0.5-1 MDa can be identified with good fidelity.


Electron tomography, single particles, localization


Article http://www.ncbi.nlm.nih.gov/pubmed/12391313

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