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Combined display of all available logs of 3DEM-Methods. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

Logs
  • 09:26, 12 November 2024 Garygangren talk contribs created page 2015Zhang IgG1 (Created page with "== Citation == 3D structural fluctuation of IgG1 antibody revealed by individual particle electron tomography. X. Zhang, L. Zhang, H. Tong, B. Peng, M.J. Rames, S. Zhang, G. Ren. Scientific Reports, (2015) , 5, 09803; doi: 10.1038/srep09803 == Abstract == Commonly used methods for determining protein structure, including X-ray crystallography and single-particle reconstruction, often provide a single and unique three-dimensional (3D) structure. However, in these metho...")
  • 09:24, 12 November 2024 Garygangren talk contribs created page 2016Zhang DNANG (Created page with "== Citation == Molecular Organization of the Early Stages of Nucleosome Phase Separation Visualized by Cryo-Electron Tomography, Meng Zhang, César Díaz-Celis, Bibiana Onoa, Cristhian Cañari-Chumpitaz, Katherinne I. Requejo, Jianfang Liu, Michael Vien, Eva Nogales, Gang Ren, and Carlos Bustamante, Molecular Cell, (2022), 18;82(16):3000-3014.e9; PMID: 35907400 DOI: 10.1016/j.molcel.2022.06.032 == Abstract == It has been proposed that the intrinsic property of nucleosom...")
  • 09:23, 12 November 2024 Garygangren talk contribs created page 2018Lei DNABennet (Created page with "== Citation == Molecular Organization of the Early Stages of Nucleosome Phase Separation Visualized by Cryo-Electron Tomography, Meng Zhang, César Díaz-Celis, Bibiana Onoa, Cristhian Cañari-Chumpitaz, Katherinne I. Requejo, Jianfang Liu, Michael Vien, Eva Nogales, Gang Ren, and Carlos Bustamante, Molecular Cell, (2022), 18;82(16):3000-3014.e9; PMID: 35907400 DOI: 10.1016/j.molcel.2022.06.032 == Abstract == It has been proposed that the intrinsic property of nucleosom...")
  • 09:22, 12 November 2024 Garygangren talk contribs created page 2022Zhang NucleosomeTrasition (Created page with "== Citation == Molecular Organization of the Early Stages of Nucleosome Phase Separation Visualized by Cryo-Electron Tomography, Meng Zhang, César Díaz-Celis, Bibiana Onoa, Cristhian Cañari-Chumpitaz, Katherinne I. Requejo, Jianfang Liu, Michael Vien, Eva Nogales, Gang Ren, and Carlos Bustamante, Molecular Cell, (2022), 18;82(16):3000-3014.e9; PMID: 35907400 DOI: 10.1016/j.molcel.2022.06.032 == Abstract == It has been proposed that the intrinsic property of nucleosom...")
  • 09:16, 12 November 2024 Garygangren talk contribs created page 2024Zhang Nucleosome (Created page with "== Citation == Angle between DNA linker and nucleosome core particle regulates array compaction revealed by individual-particle cryo-electron tomography, Meng Zhang, César Díaz-Celis, Jianfang Liu, Jinhui Tao, Paul D. Ashby, Carlos Bustamante, Gang Ren, Nature Comm., (2024), 15, 4395. doi:10.1038/s41467-024-48305-1 == Abstract == The conformational dynamics of nucleosome arrays generate a diverse spectrum of microscopic states, posing challenges to their structural de...")
  • 09:15, 12 November 2024 Garygangren talk contribs created page 2024Liu RNA (Created page with "== Citation == Non-averaged single-molecule tertiary structures reveal RNA self-folding through individual-particle cryo-electron tomography, Jianfang Liu, Ewan K.S. McRae, Meng Zhang, Cody Geary, Ebbe Sloth Andersen, Gang Ren, Nature Comm., (2024), 15, 9084. doi: 10.1038/s41467-024-52914- == Abstract == Large-scale and continuous conformational changes in the RNA self-folding process present significant challenges for structural studies, often requiring trade-offs betw...")
  • 09:10, 12 November 2024 Garygangren talk contribs created page 2016Liu AutoET (Created page with "== Citation == Fully Mechanically Controlled Automated Electron Microscopic Tomography , Jinxin Liu, Hongchang Li, Lei Zhang, Matthew Rames, Meng Zhang, Yadong Yu, Bo Peng, César Díaz Celis, April Xu, Qin Zou, Xu Yang, Xuefeng Chen, Gang Ren, Scientific Reports, (2016), 6:29231, doi: 10.1038/srep29231 == Abstract == Knowledge of three-dimensional (3D) structures of each individual particles of asymmetric and flexible proteins is essential in understanding those protei...")
  • 09:08, 12 November 2024 Garygangren talk contribs created page 2016Liu Aquasition (Created page with "== Citation == Fully Mechanically Controlled Automated Electron Microscopic Tomography , Jinxin Liu, Hongchang Li, Lei Zhang, Matthew Rames, Meng Zhang, Yadong Yu, Bo Peng, César Díaz Celis, April Xu, Qin Zou, Xu Yang, Xuefeng Chen, Gang Ren, Scientific Reports, (2016), 6:29231, doi: 10.1038/srep29231 == Abstract == Knowledge of three-dimensional (3D) structures of each individual particles of asymmetric and flexible proteins is essential in understanding those protei...")
  • 09:05, 12 November 2024 Garygangren talk contribs created page 2018Wu Contrast (Created page with "== Citation == An Algorithm for Enhancing the Image Contrast of Electron Tomography, Hao Wu, Xiaobo Zhai, Dongsheng Lei, Jianfang Liu, Yadong Yu, Rongfang Bie, Gang Ren, Scientific Reports., (2018), 8(1):16711, PMID: 30420636 == Abstract == Three-dimensional (3D) reconstruction of a single protein molecule is essential for understanding the relationship between the structural dynamics and functions of the protein. Electron tomography (ET) provides a tool for imaging an...")
  • 08:59, 12 November 2024 Garygangren talk contribs created page 2020Zhai LoTToR (Created page with "== Citation == LoTToR: An Algorithm for Missing-Wedge Correction of the Low-Tilt Tomographic 3D Reconstruction of a Single-Molecule Structure, Xiaobo Zhai, Dongsheng Lei, Meng Zhang, Jianfang Liu, Hao Wu, Yadong Yu, Lei Zhang, Gang Ren, Scientific Reports, (2020), 10, 10489. Doi: 10.1038/s41598-020-66793-1 == Abstract == A single-molecule three-dimensional (3D) structure is essential for understanding the thermal vibrations and dynamics as well as the conformational cha...")
  • 08:51, 12 November 2024 Garygangren talk contribs created page 2012Zhang IPET (Created page with "== Citation == Zhang L, Ren G (2012) IPET and FETR: Experimental Approach for Studying Molecular Structure Dynamics by Cryo-Electron Tomography of a Single-Molecule Structure. PLoS ONE 7(1): e30249 == Abstract == The dynamic personalities and structural heterogeneity of proteins are essential for proper functioning. Structural determination of dynamic/heterogeneous proteins is limited by conventional approaches of X-ray and electron microscopy (EM) of single-particle re...")
  • 08:48, 12 November 2024 Garygangren talk contribs created page 2022Han Radiation (Created page with "== Citation == Cryo-electron tomography related radiation-damage parameters for individual-molecule 3D structure determination, Han Xue, Meng Zhang, Jianfang Liu, Jianjun Wang, Gang Ren, Frontier in Chemistry, (2022), 10:889203. DOI: 10.3389/fchem.2022.889203 == Abstract == To understand the dynamic structure–function relationship of soft- and biomolecules, the determination of the three-dimensional (3D) structure of each individual molecule (nonaveraged structure) in...")
  • 08:45, 12 November 2024 Garygangren talk contribs created page 2023Kong ViralEntry (Created page with "== Citation == Facile hermetic TEM grid preparation for molecular imaging of hydrated biological samples at room temperature, Lingli Kong, Jianfang Liu, Meng Zhang, Zhuoyang Lu, Han Xue, Amy Ren, Jiankang Liu, Jinping Li, Wai Li Ling, Gang Ren, Nature Comm., (2023), 14, 5641. doi: 10.1038/s41467-023-41266-x == Abstract == The dynamics and structure of the liquid and vapor interface has remained elusive for decades due to the lack of an effective tool for directly visual...")
  • 08:00, 12 November 2024 Garygangren talk contribs created page 2023Ren NucleosomeTrasition (Created page with "== Citation == Molecular Organization of the Early Stages of Nucleosome Phase Separation Visualized by Cryo-Electron Tomography, Meng Zhang, César Díaz-Celis, Bibiana Onoa, Cristhian Cañari-Chumpitaz, Katherinne I. Requejo, Jianfang Liu, Michael Vien, Eva Nogales, Gang Ren, and Carlos Bustamante, Molecular Cell, (2022), 18;82(16):3000-3014.e9; PMID: 35907400 DOI: 10.1016/j.molcel.2022.06.032 == Abstract == It has been proposed that the intrinsic property of nucleosom...")
  • 07:56, 12 November 2024 Garygangren talk contribs created page 2024Ren Nucleosome (Created page with "== Citation == Angle between DNA linker and nucleosome core particle regulates array compaction revealed by individual-particle cryo-electron tomography, Meng Zhang, César Díaz-Celis, Jianfang Liu, Jinhui Tao, Paul D. Ashby, Carlos Bustamante, Gang Ren, Nature Comm., (2024), 15, 4395. doi:10.1038/s41467-024-48305-1 == Abstract == The conformational dynamics of nucleosome arrays generate a diverse spectrum of microscopic states, posing challenges to their structural de...")
  • 07:45, 12 November 2024 Garygangren talk contribs created page 2024Ren RNA (Created page with "== Citation == Non-averaged single-molecule tertiary structures reveal RNA self-folding through individual-particle cryo-electron tomography, Jianfang Liu, Ewan K.S. McRae, Meng Zhang, Cody Geary, Ebbe Sloth Andersen, Gang Ren, Nature Comm., (2024), 15, 9084. doi: 10.1038/s41467-024-52914- == Abstract == Large-scale and continuous conformational changes in the RNA self-folding process present significant challenges for structural studies, often requiring trade-offs betw...")
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