User contributions for WikiSysop

3 January 2018

• 09:5409:54, 3 January 2018 diff hist +1,788 N 2017Gore Validation Created page with "== Citation == Gore, S.; Sanz García, E.; Hendrickx, P. M. S.; Gutmanas, A.; Westbrook, J. D.; Yang, H.; Feng, Z.; Baskaran, K.; Berrisford, J. M.; Hudson, B. P.; Ikegawa, Y..." current
• 09:5109:51, 3 January 2018 diff hist +72 Main Page →Databases

29 December 2017

• 06:3806:38, 29 December 2017 diff hist +1,483 N 2017Nissenson VolumeCut Created page with "== Citation == Nissenson, M. & Si, D. Automated Protein Chain Isolation from 3D Cryo-EM Data and Volume Comparison Tool. Proceedings of the 8th ACM International Conference o..." current
• 06:3706:37, 29 December 2017 diff hist +101 Main Page →Segmentation
• 06:2606:26, 29 December 2017 diff hist +1,500 N 2017Chen CoarseGraining Created page with "== Citation == Chen, Y.-L. & Habeck, M. Data-driven coarse graining of large biomolecular structures. PloS one, 2017, 12, e0183057 == Abstract == Advances in experimental a..." current
• 06:2306:23, 29 December 2017 diff hist +75 Main Page →Fitting and docking

28 December 2017

• 07:4507:45, 28 December 2017 diff hist +1,190 N 2017Alewijnse Best Created page with "== Citation == Alewijnse, B.; Ashton, A. W.; Chambers, M. G.; Chen, S.; Cheng, A.; Ebrahim, M.; Eng, E. T.; Hagen, W. J. H.; Koster, A. J.; López, C. S.; Lukoyanova, N.; Ort..." current
• 07:4507:45, 28 December 2017 diff hist +92 Main Page →Automated data collection
• 07:4007:40, 28 December 2017 diff hist +1,956 N 2017Wu GTM Created page with "== Citation == Wu, J.; Ma, Y.-B.; Congdon, C.; Brett, B.; Chen, S.; Xu, Y.; Ouyang, Q. & Mao, Y. Massively parallel unsupervised single-particle cryo-EM data clustering via s..." current
• 07:3807:38, 28 December 2017 diff hist +87 Main Page →2D Classification and clustering
• 07:3507:35, 28 December 2017 diff hist +1,407 N 2018Reboul Simple Created page with "== Citation == Reboul, C. F.; Eager, M.; Elmlund, D. & Elmlund, H. Single-particle cryo-EM-Improved ab initio 3D reconstruction with SIMPLE/PRIME. Protein science, 2018, 27,..." current
• 07:3107:31, 28 December 2017 diff hist +76 Main Page →3D Reconstruction
• 07:2307:23, 28 December 2017 diff hist +1,482 N 2017Han AuTom Created page with "== Citation == Han, R.; Wan, X.; Wang, Z.; Hao, Y.; Zhang, J.; Chen, Y.; Gao, X.; Liu, Z.; Ren, F.; Sun, F. & Zhang, F. AuTom: A novel automatic platform for electron tomogra..." current
• 07:2207:22, 28 December 2017 diff hist +77 Main Page →Software
• 07:1807:18, 28 December 2017 diff hist +1,713 N 2017Tasel ActiveContours Created page with "== Citation == Tasel, S. F.; Mumcuoglu, E. U.; Hassanpour, R. Z. & Perkins, G. A validated active contour method driven by parabolic arc model for detection and segmentation..." current
• 07:1707:17, 28 December 2017 diff hist +79 Main Page →Segmentation
• 07:0407:04, 28 December 2017 diff hist +1,274 N 2018Downing DepthOfField Created page with "== Citation == Downing, K. H. & Glaeser, R. M. Estimating the effect of finite depth of field in single-particle cryo-EM. Ultramicroscopy, 2017, 184, 94-99 == Abstract == T..." current
• 07:0307:03, 28 December 2017 diff hist +76 Main Page →Image formation
• 07:0007:00, 28 December 2017 diff hist +1,502 N 2018Oveisi Stereo Created page with "== Citation == Oveisi, E.; Letouzey, A.; De Zanet, S.; Lucas, G.; Cantoni, M.; Fua, P. & Hébert, C. Stereo-vision three-dimensional reconstruction of curvilinear structures..." current
• 06:5906:59, 28 December 2017 diff hist +61 Main Page →Collection geometry
• 06:5906:59, 28 December 2017 diff hist −61 Main Page →Image formation
• 06:5906:59, 28 December 2017 diff hist +61 Main Page →Image formation
• 06:5406:54, 28 December 2017 diff hist +759 N 2017Koeck ApertureDesign Created page with "== Citation == Koeck, P. J. B. An aperture design for single side band imaging in the transmission electron microscope. Ultramicroscopy, 2017, 182, 81-84 == Abstract == A n..." current
• 06:5206:52, 28 December 2017 diff hist +90 Main Page →Image formation
• 06:4506:45, 28 December 2017 diff hist +1,544 N 2018Hettler Charging Created page with "== Citation == Hettler, S.; Kano, E.; Dries, M.; Gerthsen, D.; Pfaffmann, L.; Bruns, M.; Beleggia, M. & Malac, M. Charging of carbon thin films in scanning and phase-plate tr..." current
• 06:4306:43, 28 December 2017 diff hist +72 Main Page →Image formation

27 December 2017

• 07:4207:42, 27 December 2017 diff hist +1,190 N 2017Wlodawer Created page with "== Citation == Wlodawer, A.; Li, M. & Dauter, Z. High-Resolution Cryo-EM Maps and Models: A Crystallographer's Perspective. Structure, 2017, 25, 1589-1597.e1 == Abstract ==..." current
• 07:3907:39, 27 December 2017 diff hist +88 Main Page →Fitting and docking
• 07:2507:25, 27 December 2017 diff hist +1,965 N 2018Xia MVPENM Created page with "== Citation == Xia, K. Multiscale virtual particle based elastic network model (MVP-ENM) for normal mode analysis of large-sized biomolecules. Physical chemistry chemical phy..." current
• 07:2507:25, 27 December 2017 diff hist +68 Main Page →Fitting and docking
• 07:0807:08, 27 December 2017 diff hist +1,102 N 2017 He Created page with "== Citation == He, S. & Scheres, S. H. W. Helical reconstruction in RELION. Journal of structural biology, 2017, 198, 163-176 == Abstract == We describe a new implementatio..." current
• 07:0707:07, 27 December 2017 diff hist +60 Main Page →Reconstruction
• 07:0407:04, 27 December 2017 diff hist +1,057 N 2017Jakobi LocScale Created page with "== Citation == Jakobi, A. J.; Wilmanns, M. & Sachse, C. Model-based local density sharpening of cryo-EM maps. eLife, 2017, 6 == Abstract == Atomic models based on high-reso..." current
• 07:0207:02, 27 December 2017 diff hist +77 Main Page →Sharpening of high resolution information

26 December 2017

• 10:2010:20, 26 December 2017 diff hist +111 Main Page →Online courses
• 10:1710:17, 26 December 2017 diff hist +1,446 N 2017Wang PartialCharges Created page with "== Citation == Wang, J. On contribution of known atomic partial charges of protein backbone in electrostatic potential density maps. Protein Science, 2017, 26, 1098-1104 ==..." current
• 10:1610:16, 26 December 2017 diff hist +86 Main Page →Fitting and docking
• 10:0810:08, 26 December 2017 diff hist +643 N 2017Frank TimeResolved Created page with "== Citation == Frank, J. Time-resolved cryo-electron microscopy: Recent progress. Journal of structural biology, 2017, 200, 303-306 == Abstract == Time-resolved cryo-electr..." current
• 10:0710:07, 26 December 2017 diff hist +74 Main Page →Books and reviews
• 10:0310:03, 26 December 2017 diff hist +1,292 N 2017Fan VPP Created page with "== Citation == Fan, X.; Zhao, L.; Liu, C.; Zhang, J.-C.; Fan, K.; Yan, X.; Peng, H.-L.; Lei, J. & Wang, H.-W. Near-Atomic Resolution Structure Determination in Over-Focus wit..." current
• 10:0110:01, 26 December 2017 diff hist +113 Main Page →Image formation

18 December 2017

• 07:1307:13, 18 December 2017 diff hist +929 N 2017Tan PreferredViews Created page with "== Citation == Tan, Y. Z.; Baldwin, P. R.; Davis, J. H.; Williamson, J. R.; Potter, C. S.; Carragher, B. & Lyumkis, D. Addressing preferred specimen orientation in single-par..."
• 07:1107:11, 18 December 2017 diff hist +93 Main Page →Collection geometry
• 07:0807:08, 18 December 2017 diff hist +2,158 N 2017Xu DeepLearning Created page with "== Citation == Xu, M.; Chai, X.; Muthakana, H.; Liang, X.; Yang, G.; Zeev-Ben-Mordehai, T. & Xing, E. Deep learning based subdivision approach for large scale macromolecules..." current
• 07:0707:07, 18 December 2017 diff hist +92 Main Page →Segmentation
• 07:0207:02, 18 December 2017 diff hist +1,557 N 2017Michel ContactPrediction Created page with "== Citation == Michel, M.; Hurtado, D. M.; Uziela, K. & Elofsson, A. Large-Scale Structure Prediction By Improved Contact Predictions And Model Quality Assessment. Bioinforma..." current
• 07:0007:00, 18 December 2017 diff hist +93 Main Page →Fitting and docking

13 December 2017

• 07:4007:40, 13 December 2017 diff hist +1,424 N 2017Schillbach Warpcraft Created page with "== Citation == Schilbach, S.; Hantsche, M.; Tegunov, D.; Dienemann, C.; Wigge, C.; Urlaub, H. & Cramer, P. Structures of transcription pre-initiation complex with TFIIH and M..." current
• 07:3807:38, 13 December 2017 diff hist +119 Main Page →3D Heterogeneity
• 07:3407:34, 13 December 2017 diff hist +2,061 N 2017Turonova 3DCTF Created page with "== Citation == Turoňová, B.; Schur, F. K.; Wan, W. & Briggs, J. A. Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging res..." current