User contributions for WikiSysop

7 January 2020

• 18:5618:56, 7 January 2020 diff hist +2,191 N 2020Harastani NMA Created page with "== Citation == Harastani, M.; Sorzano, C. O. S. & Jonić, S. Hybrid Electron Microscopy Normal Mode Analysis with Scipion. Protein science, 2020 , 29 , 223-236 == Abstract..." current
• 18:5518:55, 7 January 2020 diff hist +105 Main Page →3D Heterogeneity

27 December 2019

• 07:5407:54, 27 December 2019 diff hist +1,371 N 2019Carrasco IP Created page with "== Citation == Carrasco, M.; Toledo, P. & Tischler, N. D. Macromolecule Particle Picking and Segmentation of a KLH Database by Unsupervised Cryo-EM Image Processing. Biomole..." current
• 07:5307:53, 27 December 2019 diff hist +91 Main Page →Automatic particle picking
• 07:4507:45, 27 December 2019 diff hist +1,177 N 2019Benjin Review Created page with "== Citation == Benjin, X. & Ling, L. Developments, applications, and prospects of cryo-electron microscopy. Protein science, 2019, 1-11 == Abstract == Cryo-electron micros..." current
• 07:4307:43, 27 December 2019 diff hist +54 Main Page →Books and reviews
• 07:3207:32, 27 December 2019 diff hist +2,030 N 2019Gomez Initial Created page with "== Citation == Gomez-Blanco, J.; Kaur, S.; Ortega, J. & Vargas, J. A robust approach to ab initio cryo-electron microscopy initial volume determination. J. Structural Biolog..." current
• 07:3007:30, 27 December 2019 diff hist +69 Main Page →3D Reconstruction

30 November 2019

• 07:4807:48, 30 November 2019 diff hist −4 2016Murshudov Refinement →Citation current
• 07:4807:48, 30 November 2019 diff hist +1,822 N 2016Murshudov Refinement Created page with "== Citation == Murshudov, G. N. Refinement of atomic structures against cryo-EM maps Methods in enzymology, 2016, 579, 277-305 == Abstract == This review describes so..."
• 07:4707:47, 30 November 2019 diff hist +108 Main Page →Fitting and docking

9 November 2019

• 20:5120:51, 9 November 2019 diff hist +611 N 2019Bepler Topaz Created page with "== Citation == Bepler, T.; Morin, A.; Rapp, M.; Brasch, J.; Shapiro, L.; Noble, A. J. & Berger, B. TOPAZ: A Positive-Unlabeled Convolutional Neural Network CryoEM Particle Pi..." current
• 20:4920:49, 9 November 2019 diff hist +74 Main Page →Automatic particle picking

7 November 2019

• 21:0321:03, 7 November 2019 diff hist +1,382 N 2019Ramirez DeepRes Created page with "== Citation == Ramírez-Aportela, E.; Mota, J.; Conesa, P.; Carazo, J. M. & Sorzano, C. O. S. DeepRes: a new deep-learning- and aspect-based local resolution method for elect..." current
• 21:0321:03, 7 November 2019 diff hist +83 Main Page →Resolution
• 20:5620:56, 7 November 2019 diff hist +2,176 N 2019Han Constrained Created page with "== Citation == Han, R.; Li, L.; Yang, P.; Zhang, F. & Gao, X. A novel constrained reconstruction model towards high-resolution sub-tomogram averaging. Bioinformatics (Oxford..." current
• 20:5520:55, 7 November 2019 diff hist +89 Main Page →Subtomogram analysis
• 20:4820:48, 7 November 2019 diff hist +1,071 N 2019Goetschius Asymmetric Created page with "== Citation == Goetschius, D. J.; Lee, H. & Hafenstein, S. CryoEM reconstruction approaches to resolve asymmetric features. Advances in virus research, 2019 , 105 , 73-91..." current
• 20:4720:47, 7 November 2019 diff hist +104 Main Page →Reconstruction
• 20:3920:39, 7 November 2019 diff hist +983 N 2019Fokine Enhancement Created page with "== Citation == Fokine, A.; Khare, B.; Sun, Y. & Rossmann, M. G. Enhancement of tomogram interpretability using the locked self-rotation function. Journal of structural biolo..." current
• 20:3920:39, 7 November 2019 diff hist +100 Main Page →Subtomogram analysis
• 20:3420:34, 7 November 2019 diff hist +1,154 N 2019Danev Review Created page with "== Citation == Danev, R.; Yanagisawa, H. & Kikkawa, M. Cryo-Electron Microscopy Methodology: Current Aspects and Future Directions. Trends in biochemical sciences, 2019 , 44..." current
• 20:3320:33, 7 November 2019 diff hist +66 Main Page →Books and reviews
• 20:1520:15, 7 November 2019 diff hist +1,902 N 2019Ohashi SoftBody Created page with "== Citation == Ohashi, M.; Maeda, S.-i. & Sato, C. Bayesian inference for three-dimensional helical reconstruction using a soft-body model Physical Review E, APS, 2019 , 100..." current
• 20:1420:14, 7 November 2019 diff hist +98 Main Page →Filament corrections
• 19:5719:57, 7 November 2019 diff hist +395 N 2019Klaholz Review Created page with "== Citation == Klaholz, B. P. Deriving and refining atomic models in crystallography and cryo-EM: the latest Phenix tools to facilitate structure analysis. Acta crystallogra..." current
• 19:5619:56, 7 November 2019 diff hist +76 Main Page →Fitting and docking

22 October 2019

• 14:4514:45, 22 October 2019 diff hist +879 N 1978Carrascosa matching Created page with "== Citation == Carrascosa, J. & Steven, A. A procedure for evaluation of significant structural differences between related arrays of protein molecules Micron (1969), Elsevi..." current
• 14:4214:42, 22 October 2019 diff hist +92 Main Page →2D Preprocessing

21 October 2019

• 09:5809:58, 21 October 2019 diff hist +1,316 N 2019Tegunov Warp Created page with "== Citation == Tegunov, D. & Cramer, P. Real-time cryo-electron microscopy data preprocessing with Warp. Nature methods, 2019 == Abstract == The acquisition of cryo-elec..." current
• 09:5709:57, 21 October 2019 diff hist +80 Main Page →Automated data collection

21 September 2019

• 06:2606:26, 21 September 2019 diff hist +310 Nm User talk:Fsigworth Welcome! current
• 06:2606:26, 21 September 2019 diff hist +366 Nm User:Fsigworth Creating user page for new user. current

20 September 2019

• 10:1310:13, 20 September 2019 diff hist +640 N 1974Taylor Diffraction Created page with "== Citation == Taylor, K. A. & Glaeser, R. M. Electron diffraction of frozen, hydrated protein crystals. Science, 1974 , 186 , 1036-1037 == Abstract == High-resolution elec..." current
• 10:1310:13, 20 September 2019 diff hist −1 Main Page →Image formation
• 10:1010:10, 20 September 2019 diff hist +79 Main Page →Image formation
• 10:0910:09, 20 September 2019 diff hist +957 N 1984Saxton Distortions Created page with "== Citation == Saxton, W. O.; Baumeister, W. & Hahn, M. Three-dimensional reconstruction of imperfect two-dimensional crystals. Ultramicroscopy, 1984 , 13 , 57-70 == Abstr..." current
• 10:0810:08, 20 September 2019 diff hist −8 Main Page →2D Preprocessing
• 10:0710:07, 20 September 2019 diff hist +163 Main Page →2D Preprocessing

4 September 2019

• 05:2105:21, 4 September 2019 diff hist +2,532 N 2019Alazzawi Clustering Created page with "== Citation == Al-Azzawi, A.; Ouadou, A.; Tanner, J. J. & Cheng, J. AutoCryoPicker: an unsupervised learning approach for fully automated single particle picking in Cryo-EM i..." current
• 05:1005:10, 4 September 2019 diff hist +107 Main Page →Automatic particle picking

2 September 2019

• 07:1707:17, 2 September 2019 diff hist +2,091 N 2019Jimenez SAXS Created page with "== Citation == Jimenez, A.; Jonic, S.; Majtner, T.; Oton, J.; Vilas, J. L.; Maluenda, D.; Mota, J.; Ramirez-Aportela, E.; Martinez, M.; Rancel, Y.; Segura, J.; Sanchez-Garcia..." current
• 07:0507:05, 2 September 2019 diff hist +1,519 N 2017Kim SAXS Created page with "== Citation == Kim, J. S.; Afsari, B. & Chirikjian, G. S. Cross-Validation of Data Compatibility Between Small Angle X-ray Scattering and Cryo-Electron Microscopy. Journal o..." current
• 07:0407:04, 2 September 2019 diff hist +175 Main Page →Relationship to other structural information sources

28 August 2019

• 05:5205:52, 28 August 2019 diff hist +1,347 N 2019Hamaguchi CryoARM Created page with "== Citation == Hamaguchi, T.; Maki-Yonekura, S.; Naitow, H.; Matsuura, Y.; Ishikawa, T. & Yonekura, K. A new cryo-EM system for single particle analysis. Journal of structur..." current
• 05:5105:51, 28 August 2019 diff hist +68 Main Page →Automated data collection
• 05:4805:48, 28 August 2019 diff hist +1,330 N 2019Wilkinson Scales Created page with "== Citation == Wilkinson, M.; Kumar, A. & Casañal, A. Methods for merging data sets in electron cryo-microscopy Acta Crystallographica Section D: Structural Biology, Intern..." current
• 05:4705:47, 28 August 2019 diff hist +87 Main Page →3D Reconstruction
• 05:3605:36, 28 August 2019 diff hist +1,998 N 2019Huber EDXS HAADF Created page with "== Citation == Huber, R.; Haberfehlner, G.; Holler, M.; Kothleitner, G. & Bredies, K. Total generalized variation regularization for multi-modal electron tomography. Nanosca..." current
• 05:3505:35, 28 August 2019 diff hist +92 Main Page →Relationship to other structural information sources