User contributions for WikiSysop

11 June 2021

• 08:2708:27, 11 June 2021 diff hist +96 Main Page →Image alignment
• 08:2008:20, 11 June 2021 diff hist +1,745 N 2020Mullick SuperResolution Created page with "== Citation == Mullick, B.; Wang, Y.; Yadav, P. & Farimani, A. B. Learning Super-Resolution Electron Density Map of Proteins using 3D U-Net. Proc. Machine Learning for St..." current
• 08:1708:17, 11 June 2021 diff hist +82 Main Page →Sharpening of high resolution information

10 June 2021

• 10:3610:36, 10 June 2021 diff hist +1,562 N 2019Kidmose Namdinator Created page with "== Citation == Kidmose, R. T.; Juhl, J.; Nissen, P.; Boesen, T.; Karlsen, J. L. & Pedersen, B. P. Namdinator: automatic molecular dynamics flexible fitting of structural..." current
• 10:3310:33, 10 June 2021 diff hist +84 Main Page →Fitting and docking

1 June 2021

• 08:5808:58, 1 June 2021 diff hist +1,597 N 2008Rusu Interpolation Created page with "== Citation == Rusu, M.; Birmanns, S. & Wriggers, W. Biomolecular pleiomorphism probed by spatial interpolation of coarse models. Bioinformatics, 2008, 24, 2460-2466 == Abs..." current
• 08:5708:57, 1 June 2021 diff hist +120 Main Page →Fitting and docking

27 May 2021

• 10:1410:14, 27 May 2021 diff hist +2,034 N 2021Glaeser Fading Created page with "== Citation == Glaeser, R. M.; Hagen, W. J.; Han, B.-G.; Henderson, R.; McMullan, G. & Russo, C. J. Defocus-dependent Thon-ring fading. Ultramicroscopy, 2021, 222, 113213..." current
• 10:0910:09, 27 May 2021 diff hist +75 Main Page →Image formation
• 09:3609:36, 27 May 2021 diff hist +1,968 N 2020Oroguchi Created page with "== Citation == Oroguchi, T.; Oide, M.; Wakabayashi, T. & Nakasako, M. Assessment of Force Field Accuracy Using Cryogenic Electron Microscopy Data of Hyper-thermostable Gl..." current
• 09:3509:35, 27 May 2021 diff hist +110 Main Page →Fitting and docking
• 09:2609:26, 27 May 2021 diff hist +1,686 N 2021Beckers Interpretation Created page with "== Citation == Beckers, M.; Mann, D. & Sachse, C. Structural interpretation of cryo-EM image reconstructions. Progress in biophysics and molecular biology, 2021, 160, 26-..." current
• 09:2309:23, 27 May 2021 diff hist +113 Main Page →Sharpening of high resolution information
• 09:1309:13, 27 May 2021 diff hist +1,631 N 2021Pfab DeepTracer Created page with "== Citation == Pfab, J.; Phan, N. M. & Si, D. DeepTracer for fast de novo cryo-EM protein structure modeling and special studies on CoV-related complexes. PNAS, 2021, 118..." current
• 09:1109:11, 27 May 2021 diff hist +104 Main Page →Fitting and docking
• 08:5408:54, 27 May 2021 diff hist +1,506 N 2020Stabrin Transphire Created page with "== Citation == Stabrin, M.; Schoenfeld, F.; Wagner, T.; Pospich, S.; Gatsogiannis, C. & Raunser, S. TranSPHIRE: automated and feedback-optimized on-the-fly processing for..." current
• 08:5308:53, 27 May 2021 diff hist +123 Main Page →Automated data collection
• 08:2708:27, 27 May 2021 diff hist +2,008 N 2020Nakane Atomic Created page with "== Citation == Nakane, T.; Kotecha, A.; Sente, A.; McMullan, G.; Masiulis, S.; Brown, P. M.; Grigoras, I. T.; Malinauskaite, L.; Malinauskas, T.; Miehling, J. & others. S..." current
• 08:2608:26, 27 May 2021 diff hist +84 Main Page →Books and reviews
• 08:1808:18, 27 May 2021 diff hist +1,426 N 2020Tan ThroughGrid Created page with "== Citation == Tan, Y. Z. & Rubinstein, J. L. Through-grid wicking enables high-speed cryoEM specimen preparation. Acta Crystallographica Section D: Structural Biology, 2..." current
• 08:1408:14, 27 May 2021 diff hist +110 Main Page →Sample preparation
• 08:0908:09, 27 May 2021 diff hist +1,890 N 2021Abrishami Localized Created page with "== Citation == Abrishami, V.; Ilca, S. L.; Gomez-Blanco, J.; Rissanen, I.; de la Rosa-Trevín, J. M.; Reddy, V. S.; Carazo, J.-M. & Huiskonen, J. T. Localized reconstruct..." current
• 08:0508:05, 27 May 2021 diff hist +143 Main Page →3D Reconstruction
• 07:5707:57, 27 May 2021 diff hist +1,316 N 2021Punjani 3DVA Created page with "== Citation == Punjani, A. & Fleet, D. J. 3D Variability Analysis: Resolving continuous flexibility and discrete heterogeneity from single particle cryo-EM. J. Structural Bio..." current
• 07:5607:56, 27 May 2021 diff hist +74 Main Page →3D Heterogeneity

26 May 2021

• 11:2411:24, 26 May 2021 diff hist +1,964 N 2021Baldwin SCF Created page with "== Citation == Baldwin, P. R. & Lyumkis, D. Tools for visualizing and analyzing Fourier space sampling in Cryo-EM. Progress in Biophysics and Molecular Biology, 2021, 160..." current
• 11:2111:21, 26 May 2021 diff hist +84 Main Page →Software
• 11:1511:15, 26 May 2021 diff hist +1,918 N 2020Bepler TopazDenoise Created page with "== Citation == Bepler, T.; Kelley, K.; Noble, A. J. & Berger, B. Topaz-Denoise: general deep denoising models for cryoEM and cryoET. Nature communications, 2020, 11, 5208..." current
• 11:1311:13, 26 May 2021 diff hist +93 Main Page →2D Preprocessing
• 11:0511:05, 26 May 2021 diff hist +1,109 N 2021Chreifi FISE Created page with "== Citation == Chreifi, G.; Chen, S. & Jensen, G. J. Rapid tilt-series method for cryo-electron tomography: Characterizing stage behavior during FISE acquisition. Journal..." current
• 11:0311:03, 26 May 2021 diff hist +147 Main Page →Automated data collection
• 10:5910:59, 26 May 2021 diff hist +728 N 2021Sorzano PCA Created page with "== Citation == Sorzano, C. O. S. & Carazo, J. M. Principal component analysis is limited to low-resolution analysis in cryoEM. Acta Crystallographica Section D, 2021, 77..." current
• 10:5610:56, 26 May 2021 diff hist +70 Main Page →3D Heterogeneity
• 09:4709:47, 26 May 2021 diff hist +1,385 N 2019Eisenstein FISE Created page with "== Citation == Eisenstein, F.; Danev, R. & Pilhofer, M. Improved applicability and robustness of fast cryo-electron tomography data acquisition. Journal of Structural Bio..." current
• 09:4009:40, 26 May 2021 diff hist +129 Main Page →Automated data collection
• 09:3809:38, 26 May 2021 diff hist +1,547 N 2018Ashtiani femtolitre Created page with "== Citation == Ashtiani, D.; Venugopal, H.; Belousoff, M.; Spicer, B.; Mak, J.; Neild, A. & de Marco, A. Delivery of femtolitre droplets using surface acoustic wave based..." current
• 09:3609:36, 26 May 2021 diff hist +151 Main Page →Sample preparation

25 May 2021

• 18:1418:14, 25 May 2021 diff hist +1,305 N 2018Palovcak Graphene Created page with "== Citation == Palovcak, E.; Wang, F.; Zheng, S. Q.; Yu, Z.; Li, S.; Betegon, M.; Bulkley, D.; Agard, D. A. & Cheng, Y. A simple and robust procedure for preparing graphe..." current
• 18:1318:13, 25 May 2021 diff hist +86 Main Page →Sample preparation
• 18:1018:10, 25 May 2021 diff hist +1,940 N 2021Olek FDR Created page with "== Citation == Olek, M. & Joseph, A. P. Cryo-EM Map--Based Model Validation Using the False Discovery Rate Approach. Frontiers in Molecular Biosciences, 2021, 8, 401 ==..." current
• 18:0918:09, 25 May 2021 diff hist +111 Main Page →Validation
• 17:4817:48, 25 May 2021 diff hist +1,544 N 2021Frechard Preparation Created page with "== Citation == Frechard, A.; Sharov, G.; Werderer, M. & Schultz, P. Optimization of Sample Preparation for the Observation of Macromolecular Complexes by Electron (cryo-)..." current
• 17:4717:47, 25 May 2021 diff hist +80 Main Page →Sample preparation
• 17:4317:43, 25 May 2021 diff hist +2,377 N 2014Paavolainen Missing Created page with "== Citation == Paavolainen, L.; Acar, E.; Tuna, U.; Peltonen, S.; Moriya, T.; Soonsawad, P.; Marjomäki, V.; Cheng, R. H. & Ruotsalainen, U. Compensation of missing w..." current
• 17:4217:42, 25 May 2021 diff hist +79 Main Page →3D reconstruction
• 17:3917:39, 25 May 2021 diff hist +1,713 N 2019Heymann Statistics Created page with "== Citation == Heymann, J. B. Single-particle reconstruction statistics: a diagnostic tool in solving biomolecular structures by cryo-EM. Acta Crystallographica Section F: St..." current
• 17:3717:37, 25 May 2021 diff hist +77 Main Page →Resolution

6 May 2021

• 06:3006:30, 6 May 2021 diff hist +1,465 N 2021Rheinberger IceThickness Created page with "== Citation == Rheinberger, J.; Oostergetel, G.; Resch, G. P. & Paulino, C. Optimized cryo-EM data-acquisition workflow by sample-thickness determination. Acta crystallog..." current
• 06:2806:28, 6 May 2021 diff hist +83 Main Page →Automated data collection

29 April 2021

• 13:3713:37, 29 April 2021 diff hist +1,619 N 2021Efremov ComaCorrected Created page with "== Citation == Efremov, R. G. & Stroobants, A. Coma-corrected rapid single-particle cryo-EM data collection on the CRYO ARM 300. Acta Crystallographica Section D: Structu..." current