User contributions for WikiSysop

6 August 2021

• 07:4007:40, 6 August 2021 diff hist +1,150 N 2021Mendez Graph Created page with "== Citation == Méndez, J.; Garduño, E.; Carazo, J. M. & Sorzano, C. O. S. Identification of incorrectly oriented particles in Cryo-EM Single Particle Analys..." current
• 07:3707:37, 6 August 2021 diff hist +87 Main Page →Validation

21 July 2021

• 08:4208:42, 21 July 2021 diff hist +1,513 N 2021Ki Conformational Created page with "== Citation == Ki, H.; Jo, J.; Kim, Y.; Kim, T. W.; Kim, C.; Kim, Y.; Kim, C. W.; Muniyappan, S.; Lee, S. J.; Kim, Y. & others. Uncovering the Conformational Distribution..." current
• 08:4008:40, 21 July 2021 diff hist +120 Main Page →Sample preparation
• 08:1208:12, 21 July 2021 diff hist +1,197 N 2021Yang CRIM Created page with "== Citation == Sheriff, J.; Fletcher, I. W. & Cumpson, P. J. Computer-readable Image Markers for Automated Registration in Correlative Microscopy - "autoCRIM". Ultramicro..." current
• 08:1008:10, 21 July 2021 diff hist +101 Main Page →Automated data collection

20 July 2021

• 13:0513:05, 20 July 2021 diff hist +1,735 N 2021Ohashi GRIPS Created page with "== Citation == Ohashi, M.; Hosokawa, F.; Shinkawa, T. & Iwasaki, K. Evaluation of automated particle picking for cryogenic electron microscopy using high-precision transm..." current
• 13:0313:03, 20 July 2021 diff hist +66 Main Page →Automatic particle picking

14 July 2021

• 06:5606:56, 14 July 2021 diff hist +2,061 N 2021Giraldo cryoBIFE Created page with "== Citation == Giraldo-Barreto, J.; Ortiz, S.; Thiede, E. H.; Palacio-Rodriguez, K.; Carpenter, B.; Barnett, A. H. & Cossio, P. A Bayesian approach to extracting free-ene..." current
• 06:5506:55, 14 July 2021 diff hist +98 Main Page →3D Heterogeneity
• 06:4606:46, 14 July 2021 diff hist +2,053 N 2021Mori Flexible Created page with "== Citation == Mori, T.; Terashi, G.; Matsuoka, D.; Kihara, D. & Sugita, Y. Efficient Flexible Fitting Refinement with Automatic Error Fixing for De Novo Structure Modeli..." current
• 06:4406:44, 14 July 2021 diff hist +105 Main Page →Fitting and docking
• 06:2806:28, 14 July 2021 diff hist +1,104 N 2021Voss Melting Created page with "== Citation == Voss, J. M.; Harder, O. F.; Olshin, P. K.; Drabbels, M. & Lorenz, U. J. Rapid Melting and Revitrification as an Approach to Microsecond Time-Resolved Cryo-..." current
• 06:1306:13, 14 July 2021 diff hist +122 Main Page →Sample preparation

16 June 2021

• 09:4009:40, 16 June 2021 diff hist +1,046 N 2021Jagota GoldNanoparticles Created page with "== Citation == Jagota, M.; Townshend, R. J. L.; Kang, L.-W.; Bushnell, D. A.; Dror, R. O.; Kornberg, R. D. & Azubel, M. Gold nanoparticles and tilt pairs to assess protei..." current
• 09:3909:39, 16 June 2021 diff hist +90 Main Page →Sample preparation
• 09:2009:20, 16 June 2021 diff hist +2,171 N 2021Kojima Preferred Created page with "== Citation == Kojima, R. & Yoshidome, T. A measure for the identification of preferred particle orientations in cryo-electron microscopy data: A simulation study. Biophysics..." current
• 09:1809:18, 16 June 2021 diff hist +83 Main Page →3D Alignment
• 09:0809:08, 16 June 2021 diff hist +1,599 N 2021Casasanta Microchip Created page with "== Citation == Casasanta, M. A.; Jonaid, G. M.; Kaylor, L.; Luqiu, W. Y.; Solares, M. J.; Schroen, M. L.; Dearnaley, W. J.; Wilson, J.; Dukes, M. J. & Kelly, D. F. Microc..." current
• 09:0309:03, 16 June 2021 diff hist +4 Main Page →Sample preparation
• 09:0209:02, 16 June 2021 diff hist +144 Main Page →Sample preparation
• 08:5208:52, 16 June 2021 diff hist +1,786 N 2020Venkatakrishnan MBIR Created page with "== Citation == Venkatakrishnan, S.; Juneja, P. & O’Neill, H. Model-based Reconstruction for Single Particle Cryo-Electron Microscopy. 2020 54th Asilomar Conference on S..." current
• 08:5108:51, 16 June 2021 diff hist +84 Main Page →3D Reconstruction
• 08:4208:42, 16 June 2021 diff hist +1,827 N 2021Jiang MoAu Created page with "== Citation == Jiang, X.; Xuan, S.; Zuckermann, R. N.; Glaeser, R. M.; Downing, K. H. & Balsara, N. P. Minimizing Crinkling of Soft Specimens Using Holey Gold Films on Mo..." current
• 08:4108:41, 16 June 2021 diff hist +72 Main Page →Sample preparation
• 08:3208:32, 16 June 2021 diff hist +2,207 N 2021Singla Measures Created page with "== Citation == Singla, J.; White, K. L.; Stevens, R. C. & Alber, F. Assessment of scoring functions to rank the quality of 3D subtomogram clusters from cryo-electron tomo..." current
• 08:3108:31, 16 June 2021 diff hist +103 Main Page →Subtomogram analysis
• 08:1108:11, 16 June 2021 diff hist +1,993 N 2021Yang CLEM Created page with "== Citation == Yang, J. E.; Larson, M. R.; Sibert, B. S.; Shrum, S. & Wright, E. R. CorRelator: Interactive software for real-time high precision cryo-correlative light a..." current
• 08:0908:09, 16 June 2021 diff hist +68 Main Page →Automated data collection

11 June 2021

• 08:4208:42, 11 June 2021 diff hist +674 N 2021Bai Review Created page with "== Citation == Bai, X.-c. Seeing atoms by single-particle Cryo-EM. Trends in biochemical sciences, 2021, 46, 253-254 == Abstract == Nakane et al. and Yip et al., for the f..." current
• 08:4008:40, 11 June 2021 diff hist +88 Main Page →Books and reviews
• 08:3508:35, 11 June 2021 diff hist +2,268 N 2021Thurber Automated Created page with "== Citation == Thurber, K. R.; Yin, Y. & Tycko, R. Automated picking of amyloid fibrils from cryo-EM images for helical reconstruction with RELION. Journal of structural..." current
• 08:3308:33, 11 June 2021 diff hist +108 Main Page →Helical particles
• 08:2808:28, 11 June 2021 diff hist +2,342 N 2021Han LocalConstraints Created page with "== Citation == Han, R.; Li, G. & Gao, X. Robust and ultrafast fiducial marker correspondence in electron tomography by a two-stage algorithm considering local constraints..." current
• 08:2708:27, 11 June 2021 diff hist +96 Main Page →Image alignment
• 08:2008:20, 11 June 2021 diff hist +1,745 N 2020Mullick SuperResolution Created page with "== Citation == Mullick, B.; Wang, Y.; Yadav, P. & Farimani, A. B. Learning Super-Resolution Electron Density Map of Proteins using 3D U-Net. Proc. Machine Learning for St..." current
• 08:1708:17, 11 June 2021 diff hist +82 Main Page →Sharpening of high resolution information

10 June 2021

• 10:3610:36, 10 June 2021 diff hist +1,562 N 2019Kidmose Namdinator Created page with "== Citation == Kidmose, R. T.; Juhl, J.; Nissen, P.; Boesen, T.; Karlsen, J. L. & Pedersen, B. P. Namdinator: automatic molecular dynamics flexible fitting of structural..." current
• 10:3310:33, 10 June 2021 diff hist +84 Main Page →Fitting and docking

1 June 2021

• 08:5808:58, 1 June 2021 diff hist +1,597 N 2008Rusu Interpolation Created page with "== Citation == Rusu, M.; Birmanns, S. & Wriggers, W. Biomolecular pleiomorphism probed by spatial interpolation of coarse models. Bioinformatics, 2008, 24, 2460-2466 == Abs..." current
• 08:5708:57, 1 June 2021 diff hist +120 Main Page →Fitting and docking

27 May 2021

• 10:1410:14, 27 May 2021 diff hist +2,034 N 2021Glaeser Fading Created page with "== Citation == Glaeser, R. M.; Hagen, W. J.; Han, B.-G.; Henderson, R.; McMullan, G. & Russo, C. J. Defocus-dependent Thon-ring fading. Ultramicroscopy, 2021, 222, 113213..." current
• 10:0910:09, 27 May 2021 diff hist +75 Main Page →Image formation
• 09:3609:36, 27 May 2021 diff hist +1,968 N 2020Oroguchi Created page with "== Citation == Oroguchi, T.; Oide, M.; Wakabayashi, T. & Nakasako, M. Assessment of Force Field Accuracy Using Cryogenic Electron Microscopy Data of Hyper-thermostable Gl..." current
• 09:3509:35, 27 May 2021 diff hist +110 Main Page →Fitting and docking
• 09:2609:26, 27 May 2021 diff hist +1,686 N 2021Beckers Interpretation Created page with "== Citation == Beckers, M.; Mann, D. & Sachse, C. Structural interpretation of cryo-EM image reconstructions. Progress in biophysics and molecular biology, 2021, 160, 26-..." current
• 09:2309:23, 27 May 2021 diff hist +113 Main Page →Sharpening of high resolution information
• 09:1309:13, 27 May 2021 diff hist +1,631 N 2021Pfab DeepTracer Created page with "== Citation == Pfab, J.; Phan, N. M. & Si, D. DeepTracer for fast de novo cryo-EM protein structure modeling and special studies on CoV-related complexes. PNAS, 2021, 118..." current
• 09:1109:11, 27 May 2021 diff hist +104 Main Page →Fitting and docking
• 08:5408:54, 27 May 2021 diff hist +1,506 N 2020Stabrin Transphire Created page with "== Citation == Stabrin, M.; Schoenfeld, F.; Wagner, T.; Pospich, S.; Gatsogiannis, C. & Raunser, S. TranSPHIRE: automated and feedback-optimized on-the-fly processing for..." current