User contributions for WikiSysop

8 November 2021

• 10:5610:56, 8 November 2021 diff hist +73 Main Page →2D Alignment
• 10:2710:27, 8 November 2021 diff hist +5 Main Page →2D Preprocessing
• 09:5409:54, 8 November 2021 diff hist +1,031 N 2021Rao Wasserstein Created page with "== Citation == Rao, R.; Moscovich, A. & Singer, A. Wasserstein K-Means for Clustering Tomographic Projections. Proc. Machine Learning for Structural Biology Workshop, 202..." current
• 09:5309:53, 8 November 2021 diff hist +105 Main Page →2D Classification and clustering
• 09:5209:52, 8 November 2021 diff hist −100 Main Page →2D Alignment
• 09:5209:52, 8 November 2021 diff hist +99 Main Page →2D Alignment
• 09:4509:45, 8 November 2021 diff hist +1,801 N 2021Chung CryoRALIB Created page with "== Citation == Chung, S.-C.; Hung, C.-Y.; Siao, H.-L.; Wu, H.-Y.; Chang, W.-H. & Tu, I.-P. Cryo-Ralib-A Modular Library for Accelerating Alignment in CRYO-EM. 2021 IEEE I..." current
• 09:4409:44, 8 November 2021 diff hist +76 Main Page →2D Alignment
• 09:3609:36, 8 November 2021 diff hist +2,613 N 2021Du Active Created page with "== Citation == Du, X.; Wang, H.; Zhu, Z.; Zeng, X.; Chang, Y.-W.; Zhang, J.; Xing, E. & Xu, M. Active learning to classify macromolecular structures in situ for less supe..." current
• 09:3509:35, 8 November 2021 diff hist +90 Main Page →Subtomogram analysis
• 09:0509:05, 8 November 2021 diff hist +1,416 N 2021Heimowitz Centering Created page with "== Citation == Heimowitz, A.; Sharon, N. & Singer, A. Centering noisy images with application to cryo-EM. SIAM J. Imaging Sciences, 2021, 14, 689-716 == Abstract == We..." current
• 09:0409:04, 8 November 2021 diff hist +68 Main Page →2D Alignment
• 08:3508:35, 8 November 2021 diff hist +1,740 N 2020Chung 2SDR Created page with "== Citation == Chung, S.-C.; Wang, S.-H.; Niu, P.-Y.; Huang, S.-Y.; Chang, W.-H.; Tu, I. Two-stage dimension reduction for noisy high-dimensional images and application to Cr..." current
• 08:3108:31, 8 November 2021 diff hist +61 Main Page →2D Preprocessing

22 October 2021

• 09:0609:06, 22 October 2021 diff hist +927 N 2021Maji BlackBox Created page with "== Citation == Maji, S. & Frank, J. What’s in the Black Box?--A Perspective on Software in Cryo-Electron Microscopy. Biophysical J., 2021, 120, 4307-4311 == Abstract..." current
• 09:0509:05, 22 October 2021 diff hist +80 Main Page →Software
• 07:5707:57, 22 October 2021 diff hist +2,385 N 2021Wypych gP2S Created page with "== Citation == Wypych, D.; Kierecki, D.; Golebiowski, F. M. & Rohou, A. gP2S, an Information Management System for CryoEM Experiments. J. visualized experiments: JoVE, 20..." current
• 07:5307:53, 22 October 2021 diff hist +65 Main Page →Automated data collection
• 07:4407:44, 22 October 2021 diff hist +2,058 N 2021Herreros Zernikes3D Created page with "== Citation == Herreros, D.; Lederman, R. R.; Krieger, J.; Jiménez-Moreno, A.; Mart\inez, M.; Myška, D.; Strelak, D.; Filipovic, J.; Bahar, I.; Carazo, J. &..." current
• 07:4007:40, 22 October 2021 diff hist +100 Main Page →3D Heterogeneity
• 07:2907:29, 22 October 2021 diff hist +1,829 N 2021Zhong CryoDRGN2 Created page with "== Citation == Zhong, E. D.; Lerer, A.; Davis, J. H. & Berger, B. CryoDRGN2: Ab Initio Neural Reconstruction of 3D Protein Structures From Real Cryo-EM Images. Proc. IEEE..." current
• 07:2407:24, 22 October 2021 diff hist +112 Main Page →3D Alignment
• 07:1107:11, 22 October 2021 diff hist +1,314 N 2021Nashed CryoPoseNet Created page with "== Citation == Nashed, Y. S.; Poitevin, F.; Gupta, H.; Woollard, G.; Kagan, M.; Yoon, C. H. & Ratner, D. CryoPoseNet: End-to-End Simultaneous Learning of Single-Particle..." current
• 07:1007:10, 22 October 2021 diff hist +81 Main Page →3D Alignment
• 06:5506:55, 22 October 2021 diff hist +1,040 N 2021Zhang Pegylation Created page with "== Citation == Zhang, Z.; Shigematsu, H.; Shimizu, T. & Ohto, U. Improving particle quality in cryo-EM analysis using a PEGylation method. Structure, 2021, 29, 1192-1199...." current
• 06:5406:54, 22 October 2021 diff hist +93 Main Page →Sample preparation

5 October 2021

• 08:5908:59, 5 October 2021 diff hist +1,482 N 2021Sanchez DeepEMhancer Created page with "== Citation == Sanchez-Garcia, R.; Gomez-Blanco, J.; Cuervo, A.; Carazo, J. M.; Sorzano, C. O. S. & Vargas, J. DeepEMhancer: a deep learning solution for cryo-EM volume p..." current
• 08:5808:58, 5 October 2021 diff hist +93 Main Page →Sharpening of high resolution information
• 08:4908:49, 5 October 2021 diff hist +1,781 N 2021Sorzano Scipion Created page with "== Citation == Sorzano, C. O. S.; Jiménez-Moreno, A.; Maluenda, D.; Ram\irez-Aportela, E.; Mart\inez, M.; Cuervo, A.; Melero, R.; Conesa, J. J.; Sánchez-Garc\ia, R.; Strela..." current
• 08:4808:48, 5 October 2021 diff hist +108 Main Page →Software

20 September 2021

• 09:5009:50, 20 September 2021 diff hist +1,027 N 2021Yonekura Hole Created page with "== Citation == Yonekura, K.; Maki-Yonekura, S.; Naitow, H.; Hamaguchi, T. & Takaba, K. Machine learning-based real-time object locator/evaluator for cryo-EM data collecti..." current
• 09:4809:48, 20 September 2021 diff hist +75 Main Page →Automated data collection
• 09:4009:40, 20 September 2021 diff hist +2,002 N 2021Engstrom Nitrogen Created page with "== Citation == Engstrom, T.; Clinger, J. A.; Spoth, K. A.; Clarke, O. B.; Closs, D. S.; Jayne, R.; Apker, B. & Thorne, R. High-resolution single-particle cryo-EM of sampl..." current
• 09:3909:39, 20 September 2021 diff hist +81 Main Page →Sample preparation
• 09:0909:09, 20 September 2021 diff hist +1,843 N 2021Scaramuzza Dynamo Created page with "== Citation == Scaramuzza, S. & Castaño-Díez, D. Step-by-step guide to efficient subtomogram averaging of virus-like particles with Dynamo. PLoS biology, 2021, 19, e300..." current
• 08:5508:55, 20 September 2021 diff hist +86 Main Page →Subtomogram analysis
• 08:2708:27, 20 September 2021 diff hist +1,392 N 2021Burt RWD Created page with "== Citation == Burt, A.; Gaifas, L.; Dendooven, T. & Gutsche, I. A flexible framework for multi-particle refinement in cryo-electron tomography. PLoS biology, 2021, 19, e..." current
• 08:2608:26, 20 September 2021 diff hist +86 Main Page →Software
• 06:1006:10, 20 September 2021 diff hist +1,416 N 2021Pintilie Validation Created page with "== Citation == Pintilie, G. & Chiu, W. Validation, analysis and annotation of cryo-EM structures. Acta crystallographica. Section D, Structural biology, 2021, 77, 1142-11..." current
• 06:0806:08, 20 September 2021 diff hist +81 Main Page →Validation
• 05:5005:50, 20 September 2021 diff hist +5 Main Page →Subtomogram analysis
• 05:4905:49, 20 September 2021 diff hist +1,720 N 2021Zeng OpenSet Created page with "== Citation == Zeng, Y.; Howe, G.; Yi, K.; Zeng, X.; Zhang, J.; Chang, Y.-W. & Xu, M. Unsupervised Domain Alignment Based Open Set Structural Recognition of Macromolecule..." current
• 05:4805:48, 20 September 2021 diff hist +94 Main Page →Subtomogram analysis

17 September 2021

• 09:5309:53, 17 September 2021 diff hist +1,907 N 2021Fernandez Adjustment Created page with "== Citation == Fernández-Giménez, E.; Mart\inez, M.; Sánchez-Garc\ia, R.; Marabini, R.; Ram\irez-Aportela, E.; Conesa, P.; Carazo, J. M. & Sorzano, C..." current
• 09:4409:44, 17 September 2021 diff hist +103 Main Page →Sharpening of high resolution information
• 07:4607:46, 17 September 2021 diff hist +2,228 N 2021Gupta CryoGAN Created page with "== Citation == Gupta, H.; McCann, M. T.; Donati, L. & Unser, M. Cryogan: A new reconstruction paradigm for single-particle cryo-em via deep adversarial learning. IEEE Tra..." current
• 07:4407:44, 17 September 2021 diff hist +93 Main Page →3D Reconstruction
• 06:4906:49, 17 September 2021 diff hist +2,431 N 2021Geng Nudim Created page with "== Citation == Geng, Z.; She, Z.; Zhou, Q.; Dong, Z.; Zhan, F.; Zhang, H.; Xu, J.; Gao, Z. & Dong, Y. NUDIM: A non-uniform fast Fourier transform based dual-space constra..." current
• 06:4806:48, 17 September 2021 diff hist +108 Main Page →3D reconstruction
• 06:2506:25, 17 September 2021 diff hist +1,263 N 2021Fan Denoising Created page with "== Citation == Fan, Y. & Zhao, Z. Cryo-Electron Microscopy Image Denoising Using Multi-Frequency Vector Diffusion Maps. 2021 IEEE Intl. Conf. on Image Processing (ICIP),..." current