User contributions for WikiSysop

12 November 2021

• 08:0708:07, 12 November 2021 diff hist +1,587 N 2022Naydenova Grid Created page with "== Citation == Naydenova, K. & Russo, C. J. Integrated wafer-scale manufacturing of electron cryomicroscopy specimen supports. Ultramicroscopy, 2022, 232, 113396 == Abs..." current
• 08:0708:07, 12 November 2021 diff hist +121 Main Page →Sample preparation
• 07:3707:37, 12 November 2021 diff hist +1,598 N 2022Ecoffet MorphOT Created page with "== Citation == Ecoffet, A.; Woollard, G.; Kushner, A.; Poitevin, F. & Duc, K. D. Application of transport-based metric for continuous interpolation between cryo-EM densit..." current
• 07:3507:35, 12 November 2021 diff hist +95 Main Page →3D Heterogeneity

11 November 2021

• 16:0616:06, 11 November 2021 diff hist +602 N 2021Egerton Inelastic Created page with "== Citation == Egerton, R.; Blackburn, A.; Herring, R.; Wu, L. & Zhu, Y. Direct measurement of the PSF for Coulomb delocalization--a reconsideration. Ultramicroscopy, 202..." current
• 15:5915:59, 11 November 2021 diff hist +71 Main Page →Image formation

8 November 2021

• 12:4512:45, 8 November 2021 diff hist +1,460 N 2021Fernandez TomoAlign Created page with "== Citation == Fernandez, J.-J. & Li, S. TomoAlign: A novel approach to correcting sample motion and 3D CTF in CryoET. J. Structural Biology, 2021, 213, 107778 == Abstr..." current
• 12:4412:44, 8 November 2021 diff hist −48 Main Page →3D reconstruction
• 12:4412:44, 8 November 2021 diff hist +98 Main Page →3D reconstruction
• 12:1612:16, 8 November 2021 diff hist +1,737 N 2021Vuillemot NMA Created page with "== Citation == Vuillemot, R. & Jonic, S. Combined Bayesian and Normal Mode Flexible Fitting with Hamiltonian Monte Carlo Sampling for Cryo Electron Microscopy. 29th Europ..." current
• 12:1512:15, 8 November 2021 diff hist +80 Main Page →Fitting and docking
• 12:1412:14, 8 November 2021 diff hist +5 Main Page →3D Heterogeneity
• 12:0712:07, 8 November 2021 diff hist +1,537 N 2021Hamitouche NMADL Created page with "== Citation == Hamitouche, I. & Jonic, S. Deep learning of elastic 3D shapes for cryo electron microscopy analysis of continuous conformational changes of biomolecules. 2..." current
• 12:0612:06, 8 November 2021 diff hist +114 Main Page →3D Heterogeneity
• 11:5211:52, 8 November 2021 diff hist +1,921 N 2021Lucas Cistem Created page with "== Citation == Lucas, B. A.; Himes, B. A.; Xue, L.; Grant, T.; Mahamid, J. & Grigorieff, N. Locating macromolecular assemblies in cells by 2D template matching with cisTE..." current
• 11:5111:51, 8 November 2021 diff hist +91 Main Page →Subtomogram analysis
• 11:2311:23, 8 November 2021 diff hist +1,419 N 2021He EMNUSS Created page with "== Citation == He, J. & Huang, S.-Y. EMNUSS: a deep learning framework for secondary structure annotation in cryo-EM maps. Briefings in bioinformatics, 2021, bbab156 ==..." current
• 11:2211:22, 8 November 2021 diff hist +115 Main Page →Segmentation
• 10:5710:57, 8 November 2021 diff hist +1,566 N 2021Chen Fast Created page with "== Citation == Chen, Y.-X.; Xie, R.; Yang, Y.; He, L.; Feng, D. & Shen, H.-B. Fast Cryo-EM Image Alignment Algorithm Using Power Spectrum Features. J. Chemical Informatio..." current
• 10:5610:56, 8 November 2021 diff hist +73 Main Page →2D Alignment
• 10:2710:27, 8 November 2021 diff hist +5 Main Page →2D Preprocessing
• 09:5409:54, 8 November 2021 diff hist +1,031 N 2021Rao Wasserstein Created page with "== Citation == Rao, R.; Moscovich, A. & Singer, A. Wasserstein K-Means for Clustering Tomographic Projections. Proc. Machine Learning for Structural Biology Workshop, 202..." current
• 09:5309:53, 8 November 2021 diff hist +105 Main Page →2D Classification and clustering
• 09:5209:52, 8 November 2021 diff hist −100 Main Page →2D Alignment
• 09:5209:52, 8 November 2021 diff hist +99 Main Page →2D Alignment
• 09:4509:45, 8 November 2021 diff hist +1,801 N 2021Chung CryoRALIB Created page with "== Citation == Chung, S.-C.; Hung, C.-Y.; Siao, H.-L.; Wu, H.-Y.; Chang, W.-H. & Tu, I.-P. Cryo-Ralib-A Modular Library for Accelerating Alignment in CRYO-EM. 2021 IEEE I..." current
• 09:4409:44, 8 November 2021 diff hist +76 Main Page →2D Alignment
• 09:3609:36, 8 November 2021 diff hist +2,613 N 2021Du Active Created page with "== Citation == Du, X.; Wang, H.; Zhu, Z.; Zeng, X.; Chang, Y.-W.; Zhang, J.; Xing, E. & Xu, M. Active learning to classify macromolecular structures in situ for less supe..." current
• 09:3509:35, 8 November 2021 diff hist +90 Main Page →Subtomogram analysis
• 09:0509:05, 8 November 2021 diff hist +1,416 N 2021Heimowitz Centering Created page with "== Citation == Heimowitz, A.; Sharon, N. & Singer, A. Centering noisy images with application to cryo-EM. SIAM J. Imaging Sciences, 2021, 14, 689-716 == Abstract == We..." current
• 09:0409:04, 8 November 2021 diff hist +68 Main Page →2D Alignment
• 08:3508:35, 8 November 2021 diff hist +1,740 N 2020Chung 2SDR Created page with "== Citation == Chung, S.-C.; Wang, S.-H.; Niu, P.-Y.; Huang, S.-Y.; Chang, W.-H.; Tu, I. Two-stage dimension reduction for noisy high-dimensional images and application to Cr..." current
• 08:3108:31, 8 November 2021 diff hist +61 Main Page →2D Preprocessing

22 October 2021

• 09:0609:06, 22 October 2021 diff hist +927 N 2021Maji BlackBox Created page with "== Citation == Maji, S. & Frank, J. What’s in the Black Box?--A Perspective on Software in Cryo-Electron Microscopy. Biophysical J., 2021, 120, 4307-4311 == Abstract..." current
• 09:0509:05, 22 October 2021 diff hist +80 Main Page →Software
• 07:5707:57, 22 October 2021 diff hist +2,385 N 2021Wypych gP2S Created page with "== Citation == Wypych, D.; Kierecki, D.; Golebiowski, F. M. & Rohou, A. gP2S, an Information Management System for CryoEM Experiments. J. visualized experiments: JoVE, 20..." current
• 07:5307:53, 22 October 2021 diff hist +65 Main Page →Automated data collection
• 07:4407:44, 22 October 2021 diff hist +2,058 N 2021Herreros Zernikes3D Created page with "== Citation == Herreros, D.; Lederman, R. R.; Krieger, J.; Jiménez-Moreno, A.; Mart\inez, M.; Myška, D.; Strelak, D.; Filipovic, J.; Bahar, I.; Carazo, J. &..." current
• 07:4007:40, 22 October 2021 diff hist +100 Main Page →3D Heterogeneity
• 07:2907:29, 22 October 2021 diff hist +1,829 N 2021Zhong CryoDRGN2 Created page with "== Citation == Zhong, E. D.; Lerer, A.; Davis, J. H. & Berger, B. CryoDRGN2: Ab Initio Neural Reconstruction of 3D Protein Structures From Real Cryo-EM Images. Proc. IEEE..." current
• 07:2407:24, 22 October 2021 diff hist +112 Main Page →3D Alignment
• 07:1107:11, 22 October 2021 diff hist +1,314 N 2021Nashed CryoPoseNet Created page with "== Citation == Nashed, Y. S.; Poitevin, F.; Gupta, H.; Woollard, G.; Kagan, M.; Yoon, C. H. & Ratner, D. CryoPoseNet: End-to-End Simultaneous Learning of Single-Particle..." current
• 07:1007:10, 22 October 2021 diff hist +81 Main Page →3D Alignment
• 06:5506:55, 22 October 2021 diff hist +1,040 N 2021Zhang Pegylation Created page with "== Citation == Zhang, Z.; Shigematsu, H.; Shimizu, T. & Ohto, U. Improving particle quality in cryo-EM analysis using a PEGylation method. Structure, 2021, 29, 1192-1199...." current
• 06:5406:54, 22 October 2021 diff hist +93 Main Page →Sample preparation

5 October 2021

• 08:5908:59, 5 October 2021 diff hist +1,482 N 2021Sanchez DeepEMhancer Created page with "== Citation == Sanchez-Garcia, R.; Gomez-Blanco, J.; Cuervo, A.; Carazo, J. M.; Sorzano, C. O. S. & Vargas, J. DeepEMhancer: a deep learning solution for cryo-EM volume p..." current
• 08:5808:58, 5 October 2021 diff hist +93 Main Page →Sharpening of high resolution information
• 08:4908:49, 5 October 2021 diff hist +1,781 N 2021Sorzano Scipion Created page with "== Citation == Sorzano, C. O. S.; Jiménez-Moreno, A.; Maluenda, D.; Ram\irez-Aportela, E.; Mart\inez, M.; Cuervo, A.; Melero, R.; Conesa, J. J.; Sánchez-Garc\ia, R.; Strela..." current
• 08:4808:48, 5 October 2021 diff hist +108 Main Page →Software

20 September 2021

• 09:5009:50, 20 September 2021 diff hist +1,027 N 2021Yonekura Hole Created page with "== Citation == Yonekura, K.; Maki-Yonekura, S.; Naitow, H.; Hamaguchi, T. & Takaba, K. Machine learning-based real-time object locator/evaluator for cryo-EM data collecti..." current