User contributions
From 3DEM-Methods
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- 10:16, 7 April 2022 (diff | hist) . . (+81) . . Main Page (→Books and reviews)
- 10:13, 7 April 2022 (diff | hist) . . (+1,781) . . N 2022Namba Review (Created page with "== Citation == Namba, Keiichi / Makino, Fumiaki. Recent progress and future perspective of electron cryomicroscopy for structural life sciences. 2022, Microscopyç, Vol. 71,...") (current)
- 10:12, 7 April 2022 (diff | hist) . . (+72) . . Main Page (→Books and reviews)
- 21:44, 23 March 2022 (diff | hist) . . (+1,392) . . N 2022Olek Icebreaker (Created page with "== Citation == Olek, Mateusz / Cowtan, Kevin / Webb, Donovan / Chaban, Yuriy / Zhang, Peijun. IceBreaker: Software for high-resolution single-particle cryo-EM with non-unifor...") (current)
- 21:43, 23 March 2022 (diff | hist) . . (+98) . . Main Page (→Automatic particle picking)
- 21:37, 23 March 2022 (diff | hist) . . (+1,712) . . N 2022Peck 200 (Created page with "== Citation == Peck, Jared V. / Fay, J. F. / Strauss, J. D. High-speed high-resolution data collection on a 200 keV cryo-TEM. 2022, IUCrJ, Vol. 9, No. 2 == Abstract == Limi...") (current)
- 21:36, 23 March 2022 (diff | hist) . . (+99) . . Main Page (→Automated data collection)
- 21:32, 23 March 2022 (diff | hist) . . (+2,703) . . N 2022Gomez Hierarchical (Created page with "== Citation == Gomez-Blanco, J. / Kaur, S. / Strauss, M. / Vargas, J. Hierarchical autoclassification of cryo-EM samples and macromolecular energy landscape determination. 20...") (current)
- 21:31, 23 March 2022 (diff | hist) . . (+85) . . Main Page (→3D Heterogeneity)
- 21:26, 23 March 2022 (diff | hist) . . (+1,484) . . N 2022Wang Review (Created page with "== Citation == Wang, Fengbin / Gnewou, Ordy / Solemanifar, Armin / Conticello, Vincent P. / Egelman, Edward H. Cryo-EM of Helical Polymers. 2022-02, Chemical reviews == Abst...") (current)
- 21:24, 23 March 2022 (diff | hist) . . (0) . . Main Page (→Books and reviews)
- 21:24, 23 March 2022 (diff | hist) . . (+93) . . Main Page (→Books and reviews)
- 21:21, 23 March 2022 (diff | hist) . . (+1,150) . . N 2022Forster Review (Created page with "== Citation == Förster, Friedrich. Subtomogram analysis: The sum of a tomogram’s particles reveals molecular structure in situ. 2022, Journal of Structural Biology: X,...") (current)
- 21:20, 23 March 2022 (diff | hist) . . (+72) . . Main Page (→Books and reviews)
- 21:17, 23 March 2022 (diff | hist) . . (+1,579) . . N 2022Zhang CRITASSER (Created page with "== Citation == Zhang, Xi / Zhang, Biao / Freddolino, Peter L. / Zhang, Yang. CR-I-TASSER: assemble protein structures from cryo-EM density maps using deep convolutional neura...") (current)
- 21:16, 23 March 2022 (diff | hist) . . (+105) . . Main Page (→Fitting and docking)
- 21:11, 23 March 2022 (diff | hist) . . (+1,568) . . N 2022Antanasijevic ab (Created page with "== Citation == Antanasijevic, Aleksandar / Bowman, Charles A. / Kirchdoerfer, Robert N. / Cottrell, Christopher A. / Ozorowski, Gabriel / Upadhyay, Amit A. / Cirelli, Kimberl...") (current)
- 21:10, 23 March 2022 (diff | hist) . . (+94) . . Main Page (→Fitting and docking)
- 21:02, 23 March 2022 (diff | hist) . . (+1,086) . . N 2022Vargas tubular (Created page with "== Citation == Vargas, Javier / Gómez-Pedrero, José A. / Quiroga, J. Antonio / Alonso, José. Enhancement of Cryo-EM maps by a multiscale tubular filter. 2022-01, Optics ex...") (current)
- 21:01, 23 March 2022 (diff | hist) . . (+85) . . Main Page (→Sharpening of high resolution information)
- 20:27, 23 March 2022 (diff | hist) . . (+2,280) . . N 2022Palmer Local (Created page with "== Citation == Palmer, Colin M. / Aylett, Christopher H. S. Real space in cryo-EM: the future is local. 2022-02, Acta crystallographica. Section D, Structural biology, Vol. 7...") (current)
- 20:20, 23 March 2022 (diff | hist) . . (+71) . . Main Page (→Books and reviews)
- 19:59, 23 March 2022 (diff | hist) . . (+494) . . N 2022Jones Comment (Created page with "== Citation == Jones, David T. / Thornton, Janet M. The impact of AlphaFold2 one year on. 2022, Nature methods, Vol. 19, No. 1, p. 15-20 == Abstract == Protein structures p...") (current)
- 19:54, 23 March 2022 (diff | hist) . . (+99) . . Main Page (→Books and reviews)
- 19:48, 23 March 2022 (diff | hist) . . (+737) . . N 2022Subramaniam Comment (Created page with "== Citation == Subramaniam, Sriram / Kleywegt, Gerard J. A paradigm shift in structural biology. 2022-01, Nature methods, Vol. 19, p. 20-23 == Abstract == The release of pr...") (current)
- 19:47, 23 March 2022 (diff | hist) . . (+105) . . Main Page (→Books and reviews)
- 19:42, 23 March 2022 (diff | hist) . . (+1,636) . . N 2022Klumpe FIB (Created page with "== Citation == Klumpe, Sven / Fung, Herman Kh / Goetz, Sara K. / Zagoriy, Ievgeniia / Hampoelz, Bernhard / Zhang, Xiaojie / Erdmann, Philipp S. / Baumbach, Janina / Müller,...") (current)
- 19:41, 23 March 2022 (diff | hist) . . (+88) . . Main Page (→Relationship to other structural information sources)
- 19:38, 23 March 2022 (diff | hist) . . (+1,773) . . N 2021Raimondi Review (Created page with "== Citation == Raimondi, Vittoria / Grinzato, Alessandro. A basic introduction to single particles cryo-electron microscopy. 2022, AIMS Biophysics, Vol. 9, No. 1. p. 5-20 ==...") (current)
- 19:33, 23 March 2022 (diff | hist) . . (+62) . . Main Page (→Books and reviews)
- 19:30, 23 March 2022 (diff | hist) . . (+839) . . N 2022Ourmazd Comment (Created page with "== Citation == Ourmazd, Abbas / Moffat, Keith / Lattman, Eaton Edward. Structural biology is solved - now what? 2022-01, Nature methods, Vol. 19, p. 24-26 == Abstract == Th...") (current)
- 19:29, 23 March 2022 (diff | hist) . . (+101) . . Main Page (→Books and reviews)
- 15:07, 23 March 2022 (diff | hist) . . (+1,928) . . N 2022Ni EmClarity (Created page with "== Citation == Ni, Tao / Frosio, Thomas / Mendonça, Luiza / Sheng, Yuewen / Clare, Daniel / Himes, Benjamin A. / Zhang, Peijun. High-resolution in situ structure determinati...") (current)
- 15:06, 23 March 2022 (diff | hist) . . (+74) . . Main Page (→Software)
- 15:00, 23 March 2022 (diff | hist) . . (+1,511) . . N 2022Graziadei CrossLinking (Created page with "== Citation == Graziadei, Andrea / Rappsilber, Juri. Leveraging crosslinking mass spectrometry in structural and cell biology. 2022-01, Structure, Vol. 30, p. 37-54 == Abstr...") (current)
- 14:59, 23 March 2022 (diff | hist) . . (+110) . . Main Page (→Relationship to other structural information sources)
- 09:04, 23 March 2022 (diff | hist) . . (+2,032) . . N 2022Huang DenoisingAndPicking (Created page with "== Citation == Huang, Qinwen / Zhou, Ye / Liu, Hsuan-Fu / Bartesaghi, Alberto. Weakly Supervised Learning for Joint Image Denoising and Protein Localization in Cryo-Electron...") (current)
- 09:02, 23 March 2022 (diff | hist) . . (+110) . . Main Page (→Automatic particle picking)
- 08:45, 23 March 2022 (diff | hist) . . (+1,742) . . N 2022Ravikumar SideChains (Created page with "== Citation == Ravikumar, Ashraya / Gopnarayan, Mrugsen Nagsen / Subramaniam, Sriram / Srinivasan, Narayanaswamy. Comparison of side-chain dispersion in protein structures de...") (current)
- 08:43, 23 March 2022 (diff | hist) . . (+152) . . Main Page (→Image formation)
- 08:27, 23 March 2022 (diff | hist) . . (+2,051) . . N 2021Lane NegativeBias (Created page with "== Citation == Lane, Ryan / Vos, Yoram / Wolters, Anouk H. G. / Kessel, Luc van / Chen, S. Elisa / Liv, Nalan / Klumperman, Judith / Giepmans, Ben N. G. / Hoogenboom, Jacob P...") (current)
- 08:25, 23 March 2022 (diff | hist) . . (+86) . . Main Page (→Automated data collection)
- 08:19, 23 March 2022 (diff | hist) . . (+2,396) . . N 2021Behkamal Secondary (Created page with "== Citation == Behkamal, Bahareh / Naghibzadeh, Mahmoud / Saberi, Mohammad Reza / Tehranizadeh, Zeinab Amiri / Pagnani, Andrea / Al Nasr, Kamal. Three-Dimensional Graph Match...") (current)
- 08:18, 23 March 2022 (diff | hist) . . (+92) . . Main Page (→Fitting and docking)
- 08:10, 23 March 2022 (diff | hist) . . (+1,637) . . N 2021Li detergents (Created page with "== Citation == Li, Bufan / Zhu, Dongjie / Shi, Huigang / Zhang, Xinzheng. Effect of charge on protein preferred orientation at the air-water interface in cryo-electron micros...") (current)
- 08:06, 23 March 2022 (diff | hist) . . (+92) . . Main Page (→Sample preparation)
- 12:36, 11 February 2022 (diff | hist) . . (+2,379) . . N 2021Dimchev filaments (Created page with "== Citation == Dimchev, Georgi / Amiri, Behnam / Fäßler, Florian / Falcke, Martin / Schur, Florian Km. Computational toolbox for ultrastructural quantitative analysis of fi...") (current)
- 12:34, 11 February 2022 (diff | hist) . . (+82) . . Main Page (→Segmentation)
- 07:39, 11 February 2022 (diff | hist) . . (+1,715) . . N 2021Frangakis Review (Created page with "== Citation == Frangakis, Achilleas S. It's noisy out there! A review of denoising techniques in cryo-electron tomography. 2021. J. structural biology, 213: 107804 == Abstr...") (current)
- 07:38, 11 February 2022 (diff | hist) . . (+94) . . Main Page (→Books and reviews)
- 18:42, 30 December 2021 (diff | hist) . . (+1,265) . . N 2022Chojnowski findMySeq (Created page with "== Citation == Chojnowski, G.; Simpkin, A. J.; Leonardo, D. A.; Seifert-Davila, W.; Vivas-Ruiz, D. E.; Keegan, R. & Rigden, D. findMySequence: a neural-network-based appr...") (current)
- 18:42, 30 December 2021 (diff | hist) . . (+98) . . Main Page (→Fitting and docking)
- 18:25, 30 December 2021 (diff | hist) . . (+2,212) . . N 2021Li PickerOptimizers (Created page with "== Citation == Li, H.; Chen, G.; Gao, S.; Li, J. & Zhang, F. PickerOptimizer: A Deep Learning-Based Particle Optimizer for Cryo-Electron Microscopy Particle-Picking Algorithm...") (current)
- 18:24, 30 December 2021 (diff | hist) . . (+103) . . Main Page (→Automatic particle picking)
- 17:18, 30 December 2021 (diff | hist) . . (-1) . . Main Page (→Subtomogram analysis)
- 09:32, 13 December 2021 (diff | hist) . . (+1,385) . . N 2021Strelak Xmipp (Created page with "== Citation == Strelak, D.; Jiménez-Moreno, A.; Vilas, J. L.; Ramírez-Aportela, E.; Sánchez-García, R.; Maluenda, D.; Vargas, J.; Herreros, D.; Fernández-Giménez, E.; d...") (current)
- 09:31, 13 December 2021 (diff | hist) . . (+57) . . Main Page (→Software)
- 16:11, 10 December 2021 (diff | hist) . . (-46) . . Main Page (→Electron tomography)
- 06:24, 26 November 2021 (diff | hist) . . (-73) . . Main Page (→Image formation)
- 13:40, 25 November 2021 (diff | hist) . . (+1,682) . . N 2021Nakasako Landscape (Created page with "== Citation == Nakasako, M. Energy Landscape and Hydration of Proteins. Hydration Structures of Proteins, Springer, 2021, 229-250 == Abstract == At cryogenic temperature,...") (current)
- 13:39, 25 November 2021 (diff | hist) . . (+94) . . Main Page (→3D Heterogeneity)
- 13:25, 25 November 2021 (diff | hist) . . (+1,247) . . N 2021Bieber FIBET (Created page with "== Citation == Bieber, A.; Capitanio, C.; Wilfling, F.; Plitzko, J. & Erdmann, P. S. Sample Preparation by 3D-Correlative Focused Ion Beam Milling for High-Resolution Cry...") (current)
- 13:24, 25 November 2021 (diff | hist) . . (+95) . . Main Page (→Sample preparation)
- 12:12, 19 November 2021 (diff | hist) . . (+159) . . Main Page (→Electron microscopy images)
- 08:27, 12 November 2021 (diff | hist) . . (+2,443) . . N 2021Harastani NMA (Created page with "== Citation == Harastani, M.; Eltsov, M.; Leforestier, A. & Jonic, S. HEMNMA-3D: Cryo Electron Tomography Method Based on Normal Mode Analysis to Study Continuous Conform...") (current)
- 08:25, 12 November 2021 (diff | hist) . . (+86) . . Main Page (→Subtomogram analysis)
- 08:07, 12 November 2021 (diff | hist) . . (+1,587) . . N 2022Naydenova Grid (Created page with "== Citation == Naydenova, K. & Russo, C. J. Integrated wafer-scale manufacturing of electron cryomicroscopy specimen supports. Ultramicroscopy, 2022, 232, 113396 == Abs...") (current)
- 08:07, 12 November 2021 (diff | hist) . . (+121) . . Main Page (→Sample preparation)
- 07:37, 12 November 2021 (diff | hist) . . (+1,598) . . N 2022Ecoffet MorphOT (Created page with "== Citation == Ecoffet, A.; Woollard, G.; Kushner, A.; Poitevin, F. & Duc, K. D. Application of transport-based metric for continuous interpolation between cryo-EM densit...") (current)
- 07:35, 12 November 2021 (diff | hist) . . (+95) . . Main Page (→3D Heterogeneity)
- 16:06, 11 November 2021 (diff | hist) . . (+602) . . N 2021Egerton Inelastic (Created page with "== Citation == Egerton, R.; Blackburn, A.; Herring, R.; Wu, L. & Zhu, Y. Direct measurement of the PSF for Coulomb delocalization--a reconsideration. Ultramicroscopy, 202...") (current)
- 15:59, 11 November 2021 (diff | hist) . . (+71) . . Main Page (→Image formation)
- 12:45, 8 November 2021 (diff | hist) . . (+1,460) . . N 2021Fernandez TomoAlign (Created page with "== Citation == Fernandez, J.-J. & Li, S. TomoAlign: A novel approach to correcting sample motion and 3D CTF in CryoET. J. Structural Biology, 2021, 213, 107778 == Abstr...") (current)
- 12:44, 8 November 2021 (diff | hist) . . (-48) . . Main Page (→3D reconstruction)
- 12:44, 8 November 2021 (diff | hist) . . (+98) . . Main Page (→3D reconstruction)
- 12:16, 8 November 2021 (diff | hist) . . (+1,737) . . N 2021Vuillemot NMA (Created page with "== Citation == Vuillemot, R. & Jonic, S. Combined Bayesian and Normal Mode Flexible Fitting with Hamiltonian Monte Carlo Sampling for Cryo Electron Microscopy. 29th Europ...") (current)
- 12:15, 8 November 2021 (diff | hist) . . (+80) . . Main Page (→Fitting and docking)
- 12:14, 8 November 2021 (diff | hist) . . (+5) . . Main Page (→3D Heterogeneity)
- 12:07, 8 November 2021 (diff | hist) . . (+1,537) . . N 2021Hamitouche NMADL (Created page with "== Citation == Hamitouche, I. & Jonic, S. Deep learning of elastic 3D shapes for cryo electron microscopy analysis of continuous conformational changes of biomolecules. 2...") (current)
- 12:06, 8 November 2021 (diff | hist) . . (+114) . . Main Page (→3D Heterogeneity)
- 11:52, 8 November 2021 (diff | hist) . . (+1,921) . . N 2021Lucas Cistem (Created page with "== Citation == Lucas, B. A.; Himes, B. A.; Xue, L.; Grant, T.; Mahamid, J. & Grigorieff, N. Locating macromolecular assemblies in cells by 2D template matching with cisTE...") (current)
- 11:51, 8 November 2021 (diff | hist) . . (+91) . . Main Page (→Subtomogram analysis)
- 11:23, 8 November 2021 (diff | hist) . . (+1,419) . . N 2021He EMNUSS (Created page with "== Citation == He, J. & Huang, S.-Y. EMNUSS: a deep learning framework for secondary structure annotation in cryo-EM maps. Briefings in bioinformatics, 2021, bbab156 ==...") (current)
- 11:22, 8 November 2021 (diff | hist) . . (+115) . . Main Page (→Segmentation)
- 10:57, 8 November 2021 (diff | hist) . . (+1,566) . . N 2021Chen Fast (Created page with "== Citation == Chen, Y.-X.; Xie, R.; Yang, Y.; He, L.; Feng, D. & Shen, H.-B. Fast Cryo-EM Image Alignment Algorithm Using Power Spectrum Features. J. Chemical Informatio...") (current)
- 10:56, 8 November 2021 (diff | hist) . . (+73) . . Main Page (→2D Alignment)
- 10:27, 8 November 2021 (diff | hist) . . (+5) . . Main Page (→2D Preprocessing)
- 09:54, 8 November 2021 (diff | hist) . . (+1,031) . . N 2021Rao Wasserstein (Created page with "== Citation == Rao, R.; Moscovich, A. & Singer, A. Wasserstein K-Means for Clustering Tomographic Projections. Proc. Machine Learning for Structural Biology Workshop, 202...") (current)
- 09:53, 8 November 2021 (diff | hist) . . (+105) . . Main Page (→2D Classification and clustering)
- 09:52, 8 November 2021 (diff | hist) . . (-100) . . Main Page (→2D Alignment)
- 09:52, 8 November 2021 (diff | hist) . . (+99) . . Main Page (→2D Alignment)
- 09:45, 8 November 2021 (diff | hist) . . (+1,801) . . N 2021Chung CryoRALIB (Created page with "== Citation == Chung, S.-C.; Hung, C.-Y.; Siao, H.-L.; Wu, H.-Y.; Chang, W.-H. & Tu, I.-P. Cryo-Ralib-A Modular Library for Accelerating Alignment in CRYO-EM. 2021 IEEE I...") (current)
- 09:44, 8 November 2021 (diff | hist) . . (+76) . . Main Page (→2D Alignment)
- 09:36, 8 November 2021 (diff | hist) . . (+2,613) . . N 2021Du Active (Created page with "== Citation == Du, X.; Wang, H.; Zhu, Z.; Zeng, X.; Chang, Y.-W.; Zhang, J.; Xing, E. & Xu, M. Active learning to classify macromolecular structures in situ for less supe...") (current)
- 09:35, 8 November 2021 (diff | hist) . . (+90) . . Main Page (→Subtomogram analysis)
- 09:05, 8 November 2021 (diff | hist) . . (+1,416) . . N 2021Heimowitz Centering (Created page with "== Citation == Heimowitz, A.; Sharon, N. & Singer, A. Centering noisy images with application to cryo-EM. SIAM J. Imaging Sciences, 2021, 14, 689-716 == Abstract == We...") (current)
- 09:04, 8 November 2021 (diff | hist) . . (+68) . . Main Page (→2D Alignment)
- 08:35, 8 November 2021 (diff | hist) . . (+1,740) . . N 2020Chung 2SDR (Created page with "== Citation == Chung, S.-C.; Wang, S.-H.; Niu, P.-Y.; Huang, S.-Y.; Chang, W.-H.; Tu, I. Two-stage dimension reduction for noisy high-dimensional images and application to Cr...") (current)
- 08:31, 8 November 2021 (diff | hist) . . (+61) . . Main Page (→2D Preprocessing)
- 09:06, 22 October 2021 (diff | hist) . . (+927) . . N 2021Maji BlackBox (Created page with "== Citation == Maji, S. & Frank, J. What’s in the Black Box?--A Perspective on Software in Cryo-Electron Microscopy. Biophysical J., 2021, 120, 4307-4311 == Abstract...") (current)
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