User contributions
From 3DEM-Methods
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- 12:18, 3 May 2022 (diff | hist) . . (+2,205) . . N 2020Yokoyama Good (Created page with "== Citation == Yokoyama, Yuichi / Terada, Tohru / Shimizu, Kentaro / Nishikawa, Kouki / Kozai, Daisuke / Shimada, Atsuhiro / Mizoguchi, Akira / Fujiyoshi, Yoshinori / Tani, K...") (current)
- 12:16, 3 May 2022 (diff | hist) . . (+93) . . Main Page (→Automated data collection)
- 12:12, 3 May 2022 (diff | hist) . . (+1,654) . . N 2022Lu SphericalEmbeddings (Created page with "== Citation == Lu, Yonggang / Liu, Jiaxuan / Zhu, Li / Zhang, Bianlan / He, Jing. 3D reconstruction from cryo-EM projection images using two spherical embeddings. 2022. Commu...") (current)
- 12:11, 3 May 2022 (diff | hist) . . (+113) . . Main Page (→3D Alignment)
- 12:04, 3 May 2022 (diff | hist) . . (+2,263) . . N 2022Peters Feature (Created page with "== Citation == Peters, John Jacob / Leitz, Jeremy / Guo, Qiang / Beck, Florian / Baumeister, Wolfgang / Brunger, Axel T. A feature-guided, focused 3D signal permutation metho...") (current)
- 12:03, 3 May 2022 (diff | hist) . . (+93) . . Main Page (→Subtomogram analysis)
- 11:56, 3 May 2022 (diff | hist) . . (+1,474) . . N 2022Neijenhuis Haddock (Created page with "== Citation == Neijenhuis, Tim / van Keulen, Siri C. / Bonvin, Alexandre M. J. J. Interface refinement of low- to medium-resolution Cryo-EM complexes using HADDOCK2.4. 2022....") (current)
- 11:55, 3 May 2022 (diff | hist) . . (+113) . . Main Page (→Fitting and docking)
- 11:48, 3 May 2022 (diff | hist) . . (+1,395) . . N 2021Kimanius Relion4 (Created page with "== Citation == Kimanius, Dari / Dong, Liyi / Sharov, Grigory / Nakane, Takanori / Scheres, Sjors H. W. New tools for automated cryo-EM single-particle analysis in RELION-4.0....") (current)
- 11:47, 3 May 2022 (diff | hist) . . (+64) . . Main Page (→Software)
- 11:42, 3 May 2022 (diff | hist) . . (+1,692) . . N 2022Skalidis Endogenous (Created page with "== Citation == <Skalidis, Ioannis / Kyrilis, Fotis L. / Tüting, Christian / Hamdi, Farzad / Chojnowski, Grzegorz / Kastritis, Panagiotis L. Cryo-EM and artificial intelligen...") (current)
- 11:41, 3 May 2022 (diff | hist) . . (+98) . . Main Page (→3D Heterogeneity)
- 11:31, 3 May 2022 (diff | hist) . . (+1,562) . . N 2022Rabuck Quant (Created page with "== Citation == Rabuck-Gibbons, Jessica N. / Lyumkis, Dmitry / Williamson, James R. Quantitative mining of compositional heterogeneity in cryo-EM datasets of ribosome assembly...") (current)
- 11:30, 3 May 2022 (diff | hist) . . (+83) . . Main Page (→3D Heterogeneity)
- 14:07, 19 April 2022 (diff | hist) . . (+89) . . Main Page (→Online courses and Learning material)
- 14:06, 19 April 2022 (diff | hist) . . (+120) . . Main Page (→Online courses and Learning material)
- 13:20, 13 April 2022 (diff | hist) . . (+2,079) . . N 2022Krieger Prody2 (Created page with "== Citation == Krieger, James Michael / Sorzano, Carlos Oscar S. / Carazo, Jose Maria / Bahar, Ivet. Protein dynamics developments for the large scale and cryoEM: case study...") (current)
- 13:15, 13 April 2022 (diff | hist) . . (+126) . . Main Page (→Fitting and docking)
- 13:11, 13 April 2022 (diff | hist) . . (+2,861) . . N 2022Sorzano Bias (Created page with "== Citation == Sorzano, C. O. S. / Jiménez-Moreno, A. / Maluenda, D. / Martinez, M. / Ramirez-Aportela, E. / Melero, R. / Cuervo, A. / Conesa, J. / Filipovic, J. / Conesa, P...") (current)
- 13:09, 13 April 2022 (diff | hist) . . (+91) . . Main Page (→Validation)
- 12:55, 13 April 2022 (diff | hist) . . (+1,563) . . N 2022Vant MD (Created page with "== Citation == Vant, John W. / Sarkar, Daipayan / Nguyen, Jonathan / Baker, Alexander T. / Vermaas, Josh V. / Singharoy, Abhishek. Exploring cryo-electron microscopy with mol...") (current)
- 12:53, 13 April 2022 (diff | hist) . . (+85) . . Main Page (→Books and reviews)
- 21:58, 7 April 2022 (diff | hist) . . (+1,626) . . N 2022Chen Detergents (Created page with "== Citation == Chen, Shaoxia / Li, Jade / Vinothkumar, Kutti R. / Henderson, Richard. Interaction of human erythrocyte catalase with air-water interface in cryoEM. 2022-02, M...") (current)
- 21:56, 7 April 2022 (diff | hist) . . (+86) . . Main Page (→Sample preparation)
- 21:53, 7 April 2022 (diff | hist) . . (+1,010) . . N 2022Scher FIB (Created page with "== Citation == Scher, Nadav / Rechav, Katya / Paul-Gilloteaux, Perrine / Avinoam, Ori. Sample preparation and image registration for correlative cryo-FM and cryo-FIB-SEM of p...") (current)
- 21:52, 7 April 2022 (diff | hist) . . (+92) . . Main Page (→Sample preparation)
- 21:46, 7 April 2022 (diff | hist) . . (+1,970) . . N 2021Jimenez Scipion (Created page with "== Citation == Jiménez-Moreno, A. / Del Caño, L. / Martínez, M. / Ramírez-Aportela, E. / Cuervo, A. / Melero, R. / Sánchez-García, R. / Strelak, D. / Fernández-Giméne...") (current)
- 21:41, 7 April 2022 (diff | hist) . . (+87) . . Main Page (→Software)
- 21:12, 7 April 2022 (diff | hist) . . (+1,665) . . N 2022Caldraft Tilt (Created page with "== Citation == Calcraft, Thomas / Rosenthal, Peter B. Cryogenic electron microscopy approaches that combine images and tilt series. 2022-02. Microscopy, Vol. 71, p. i15-i22...") (current)
- 21:11, 7 April 2022 (diff | hist) . . (+82) . . Main Page (→Books and reviews)
- 11:04, 7 April 2022 (diff | hist) . . (+1,465) . . N 2020Zachs FIB (Created page with "== Citation == Zachs, Tobias / Schertel, Andreas / Medeiros, João / Weiss, Gregor L. / Hugener, Jannik / Matos, Joao / Pilhofer, Martin. Fully automated, sequential focused...") (current)
- 11:03, 7 April 2022 (diff | hist) . . (+61) . . Main Page (→Sample preparation)
- 10:57, 7 April 2022 (diff | hist) . . (+1,455) . . N 2021Herzik Setup (Created page with "== Citation == Herzik, Mark A. Setting Up Parallel Illumination on the Talos Arctica for High-Resolution Data Collection. 2021. CryoEM. p. 125-144 == Abstract == Illuminati...") (current)
- 10:56, 7 April 2022 (diff | hist) . . (+70) . . Main Page (→Automated data collection)
- 10:47, 7 April 2022 (diff | hist) . . (+1,901) . . N 2021Lander Review (Created page with "== Citation == Lander, Gabriel C. / Glaeser, Robert M. Conquer by cryo-EM without physically dividing. 2021-11. Biochemical Society transactions, Vol. 49, p. 2287-2298 == Ab...") (current)
- 10:44, 7 April 2022 (diff | hist) . . (+72) . . Main Page (→Books and reviews)
- 10:29, 7 April 2022 (diff | hist) . . (+1,543) . . N 2022Boehning CompressedSensing (Created page with "== Citation == Böhning, Jan / Bharat, Tanmay A. M. / Collins, Sean M. Compressed sensing for electron cryotomography and high-resolution subtomogram averaging of biological...") (current)
- 10:28, 7 April 2022 (diff | hist) . . (+96) . . Main Page (→Subtomogram analysis)
- 10:17, 7 April 2022 (diff | hist) . . (+956) . . N 2022Treder DL (Created page with "== Citation == Treder, Kevin P. / Huang, Chen / Kim, Judy S. / Kirkland, Angus I. Applications of deep learning in electron microscopy. 2022-02, Microscopy, Vol. 71, p. i100-...") (current)
- 10:16, 7 April 2022 (diff | hist) . . (+81) . . Main Page (→Books and reviews)
- 10:13, 7 April 2022 (diff | hist) . . (+1,781) . . N 2022Namba Review (Created page with "== Citation == Namba, Keiichi / Makino, Fumiaki. Recent progress and future perspective of electron cryomicroscopy for structural life sciences. 2022, Microscopyç, Vol. 71,...") (current)
- 10:12, 7 April 2022 (diff | hist) . . (+72) . . Main Page (→Books and reviews)
- 21:44, 23 March 2022 (diff | hist) . . (+1,392) . . N 2022Olek Icebreaker (Created page with "== Citation == Olek, Mateusz / Cowtan, Kevin / Webb, Donovan / Chaban, Yuriy / Zhang, Peijun. IceBreaker: Software for high-resolution single-particle cryo-EM with non-unifor...") (current)
- 21:43, 23 March 2022 (diff | hist) . . (+98) . . Main Page (→Automatic particle picking)
- 21:37, 23 March 2022 (diff | hist) . . (+1,712) . . N 2022Peck 200 (Created page with "== Citation == Peck, Jared V. / Fay, J. F. / Strauss, J. D. High-speed high-resolution data collection on a 200 keV cryo-TEM. 2022, IUCrJ, Vol. 9, No. 2 == Abstract == Limi...") (current)
- 21:36, 23 March 2022 (diff | hist) . . (+99) . . Main Page (→Automated data collection)
- 21:32, 23 March 2022 (diff | hist) . . (+2,703) . . N 2022Gomez Hierarchical (Created page with "== Citation == Gomez-Blanco, J. / Kaur, S. / Strauss, M. / Vargas, J. Hierarchical autoclassification of cryo-EM samples and macromolecular energy landscape determination. 20...") (current)
- 21:31, 23 March 2022 (diff | hist) . . (+85) . . Main Page (→3D Heterogeneity)
- 21:26, 23 March 2022 (diff | hist) . . (+1,484) . . N 2022Wang Review (Created page with "== Citation == Wang, Fengbin / Gnewou, Ordy / Solemanifar, Armin / Conticello, Vincent P. / Egelman, Edward H. Cryo-EM of Helical Polymers. 2022-02, Chemical reviews == Abst...") (current)
- 21:24, 23 March 2022 (diff | hist) . . (0) . . Main Page (→Books and reviews)
- 21:24, 23 March 2022 (diff | hist) . . (+93) . . Main Page (→Books and reviews)
- 21:21, 23 March 2022 (diff | hist) . . (+1,150) . . N 2022Forster Review (Created page with "== Citation == Förster, Friedrich. Subtomogram analysis: The sum of a tomogram’s particles reveals molecular structure in situ. 2022, Journal of Structural Biology: X,...") (current)
- 21:20, 23 March 2022 (diff | hist) . . (+72) . . Main Page (→Books and reviews)
- 21:17, 23 March 2022 (diff | hist) . . (+1,579) . . N 2022Zhang CRITASSER (Created page with "== Citation == Zhang, Xi / Zhang, Biao / Freddolino, Peter L. / Zhang, Yang. CR-I-TASSER: assemble protein structures from cryo-EM density maps using deep convolutional neura...") (current)
- 21:16, 23 March 2022 (diff | hist) . . (+105) . . Main Page (→Fitting and docking)
- 21:11, 23 March 2022 (diff | hist) . . (+1,568) . . N 2022Antanasijevic ab (Created page with "== Citation == Antanasijevic, Aleksandar / Bowman, Charles A. / Kirchdoerfer, Robert N. / Cottrell, Christopher A. / Ozorowski, Gabriel / Upadhyay, Amit A. / Cirelli, Kimberl...") (current)
- 21:10, 23 March 2022 (diff | hist) . . (+94) . . Main Page (→Fitting and docking)
- 21:02, 23 March 2022 (diff | hist) . . (+1,086) . . N 2022Vargas tubular (Created page with "== Citation == Vargas, Javier / Gómez-Pedrero, José A. / Quiroga, J. Antonio / Alonso, José. Enhancement of Cryo-EM maps by a multiscale tubular filter. 2022-01, Optics ex...") (current)
- 21:01, 23 March 2022 (diff | hist) . . (+85) . . Main Page (→Sharpening of high resolution information)
- 20:27, 23 March 2022 (diff | hist) . . (+2,280) . . N 2022Palmer Local (Created page with "== Citation == Palmer, Colin M. / Aylett, Christopher H. S. Real space in cryo-EM: the future is local. 2022-02, Acta crystallographica. Section D, Structural biology, Vol. 7...") (current)
- 20:20, 23 March 2022 (diff | hist) . . (+71) . . Main Page (→Books and reviews)
- 19:59, 23 March 2022 (diff | hist) . . (+494) . . N 2022Jones Comment (Created page with "== Citation == Jones, David T. / Thornton, Janet M. The impact of AlphaFold2 one year on. 2022, Nature methods, Vol. 19, No. 1, p. 15-20 == Abstract == Protein structures p...") (current)
- 19:54, 23 March 2022 (diff | hist) . . (+99) . . Main Page (→Books and reviews)
- 19:48, 23 March 2022 (diff | hist) . . (+737) . . N 2022Subramaniam Comment (Created page with "== Citation == Subramaniam, Sriram / Kleywegt, Gerard J. A paradigm shift in structural biology. 2022-01, Nature methods, Vol. 19, p. 20-23 == Abstract == The release of pr...") (current)
- 19:47, 23 March 2022 (diff | hist) . . (+105) . . Main Page (→Books and reviews)
- 19:42, 23 March 2022 (diff | hist) . . (+1,636) . . N 2022Klumpe FIB (Created page with "== Citation == Klumpe, Sven / Fung, Herman Kh / Goetz, Sara K. / Zagoriy, Ievgeniia / Hampoelz, Bernhard / Zhang, Xiaojie / Erdmann, Philipp S. / Baumbach, Janina / Müller,...") (current)
- 19:41, 23 March 2022 (diff | hist) . . (+88) . . Main Page (→Relationship to other structural information sources)
- 19:38, 23 March 2022 (diff | hist) . . (+1,773) . . N 2021Raimondi Review (Created page with "== Citation == Raimondi, Vittoria / Grinzato, Alessandro. A basic introduction to single particles cryo-electron microscopy. 2022, AIMS Biophysics, Vol. 9, No. 1. p. 5-20 ==...") (current)
- 19:33, 23 March 2022 (diff | hist) . . (+62) . . Main Page (→Books and reviews)
- 19:30, 23 March 2022 (diff | hist) . . (+839) . . N 2022Ourmazd Comment (Created page with "== Citation == Ourmazd, Abbas / Moffat, Keith / Lattman, Eaton Edward. Structural biology is solved - now what? 2022-01, Nature methods, Vol. 19, p. 24-26 == Abstract == Th...") (current)
- 19:29, 23 March 2022 (diff | hist) . . (+101) . . Main Page (→Books and reviews)
- 15:07, 23 March 2022 (diff | hist) . . (+1,928) . . N 2022Ni EmClarity (Created page with "== Citation == Ni, Tao / Frosio, Thomas / Mendonça, Luiza / Sheng, Yuewen / Clare, Daniel / Himes, Benjamin A. / Zhang, Peijun. High-resolution in situ structure determinati...") (current)
- 15:06, 23 March 2022 (diff | hist) . . (+74) . . Main Page (→Software)
- 15:00, 23 March 2022 (diff | hist) . . (+1,511) . . N 2022Graziadei CrossLinking (Created page with "== Citation == Graziadei, Andrea / Rappsilber, Juri. Leveraging crosslinking mass spectrometry in structural and cell biology. 2022-01, Structure, Vol. 30, p. 37-54 == Abstr...") (current)
- 14:59, 23 March 2022 (diff | hist) . . (+110) . . Main Page (→Relationship to other structural information sources)
- 09:04, 23 March 2022 (diff | hist) . . (+2,032) . . N 2022Huang DenoisingAndPicking (Created page with "== Citation == Huang, Qinwen / Zhou, Ye / Liu, Hsuan-Fu / Bartesaghi, Alberto. Weakly Supervised Learning for Joint Image Denoising and Protein Localization in Cryo-Electron...") (current)
- 09:02, 23 March 2022 (diff | hist) . . (+110) . . Main Page (→Automatic particle picking)
- 08:45, 23 March 2022 (diff | hist) . . (+1,742) . . N 2022Ravikumar SideChains (Created page with "== Citation == Ravikumar, Ashraya / Gopnarayan, Mrugsen Nagsen / Subramaniam, Sriram / Srinivasan, Narayanaswamy. Comparison of side-chain dispersion in protein structures de...") (current)
- 08:43, 23 March 2022 (diff | hist) . . (+152) . . Main Page (→Image formation)
- 08:27, 23 March 2022 (diff | hist) . . (+2,051) . . N 2021Lane NegativeBias (Created page with "== Citation == Lane, Ryan / Vos, Yoram / Wolters, Anouk H. G. / Kessel, Luc van / Chen, S. Elisa / Liv, Nalan / Klumperman, Judith / Giepmans, Ben N. G. / Hoogenboom, Jacob P...") (current)
- 08:25, 23 March 2022 (diff | hist) . . (+86) . . Main Page (→Automated data collection)
- 08:19, 23 March 2022 (diff | hist) . . (+2,396) . . N 2021Behkamal Secondary (Created page with "== Citation == Behkamal, Bahareh / Naghibzadeh, Mahmoud / Saberi, Mohammad Reza / Tehranizadeh, Zeinab Amiri / Pagnani, Andrea / Al Nasr, Kamal. Three-Dimensional Graph Match...") (current)
- 08:18, 23 March 2022 (diff | hist) . . (+92) . . Main Page (→Fitting and docking)
- 08:10, 23 March 2022 (diff | hist) . . (+1,637) . . N 2021Li detergents (Created page with "== Citation == Li, Bufan / Zhu, Dongjie / Shi, Huigang / Zhang, Xinzheng. Effect of charge on protein preferred orientation at the air-water interface in cryo-electron micros...") (current)
- 08:06, 23 March 2022 (diff | hist) . . (+92) . . Main Page (→Sample preparation)
- 12:36, 11 February 2022 (diff | hist) . . (+2,379) . . N 2021Dimchev filaments (Created page with "== Citation == Dimchev, Georgi / Amiri, Behnam / Fäßler, Florian / Falcke, Martin / Schur, Florian Km. Computational toolbox for ultrastructural quantitative analysis of fi...") (current)
- 12:34, 11 February 2022 (diff | hist) . . (+82) . . Main Page (→Segmentation)
- 07:39, 11 February 2022 (diff | hist) . . (+1,715) . . N 2021Frangakis Review (Created page with "== Citation == Frangakis, Achilleas S. It's noisy out there! A review of denoising techniques in cryo-electron tomography. 2021. J. structural biology, 213: 107804 == Abstr...") (current)
- 07:38, 11 February 2022 (diff | hist) . . (+94) . . Main Page (→Books and reviews)
- 18:42, 30 December 2021 (diff | hist) . . (+1,265) . . N 2022Chojnowski findMySeq (Created page with "== Citation == Chojnowski, G.; Simpkin, A. J.; Leonardo, D. A.; Seifert-Davila, W.; Vivas-Ruiz, D. E.; Keegan, R. & Rigden, D. findMySequence: a neural-network-based appr...") (current)
- 18:42, 30 December 2021 (diff | hist) . . (+98) . . Main Page (→Fitting and docking)
- 18:25, 30 December 2021 (diff | hist) . . (+2,212) . . N 2021Li PickerOptimizers (Created page with "== Citation == Li, H.; Chen, G.; Gao, S.; Li, J. & Zhang, F. PickerOptimizer: A Deep Learning-Based Particle Optimizer for Cryo-Electron Microscopy Particle-Picking Algorithm...") (current)
- 18:24, 30 December 2021 (diff | hist) . . (+103) . . Main Page (→Automatic particle picking)
- 17:18, 30 December 2021 (diff | hist) . . (-1) . . Main Page (→Subtomogram analysis)
- 09:32, 13 December 2021 (diff | hist) . . (+1,385) . . N 2021Strelak Xmipp (Created page with "== Citation == Strelak, D.; Jiménez-Moreno, A.; Vilas, J. L.; Ramírez-Aportela, E.; Sánchez-García, R.; Maluenda, D.; Vargas, J.; Herreros, D.; Fernández-Giménez, E.; d...") (current)
- 09:31, 13 December 2021 (diff | hist) . . (+57) . . Main Page (→Software)
- 16:11, 10 December 2021 (diff | hist) . . (-46) . . Main Page (→Electron tomography)
- 06:24, 26 November 2021 (diff | hist) . . (-73) . . Main Page (→Image formation)
- 13:40, 25 November 2021 (diff | hist) . . (+1,682) . . N 2021Nakasako Landscape (Created page with "== Citation == Nakasako, M. Energy Landscape and Hydration of Proteins. Hydration Structures of Proteins, Springer, 2021, 229-250 == Abstract == At cryogenic temperature,...") (current)
- 13:39, 25 November 2021 (diff | hist) . . (+94) . . Main Page (→3D Heterogeneity)
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