User contributions
From 3DEM-Methods
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- 20:34, 7 November 2019 (diff | hist) . . (+1,154) . . N 2019Danev Review (Created page with "== Citation == Danev, R.; Yanagisawa, H. & Kikkawa, M. Cryo-Electron Microscopy Methodology: Current Aspects and Future Directions. Trends in biochemical sciences, 2019 , 44...") (current)
- 20:33, 7 November 2019 (diff | hist) . . (+66) . . Main Page (→Books and reviews)
- 20:15, 7 November 2019 (diff | hist) . . (+1,902) . . N 2019Ohashi SoftBody (Created page with "== Citation == Ohashi, M.; Maeda, S.-i. & Sato, C. Bayesian inference for three-dimensional helical reconstruction using a soft-body model Physical Review E, APS, 2019 , 100...") (current)
- 20:14, 7 November 2019 (diff | hist) . . (+98) . . Main Page (→Filament corrections)
- 19:57, 7 November 2019 (diff | hist) . . (+395) . . N 2019Klaholz Review (Created page with "== Citation == Klaholz, B. P. Deriving and refining atomic models in crystallography and cryo-EM: the latest Phenix tools to facilitate structure analysis. Acta crystallogra...") (current)
- 19:56, 7 November 2019 (diff | hist) . . (+76) . . Main Page (→Fitting and docking)
- 14:45, 22 October 2019 (diff | hist) . . (+879) . . N 1978Carrascosa matching (Created page with "== Citation == Carrascosa, J. & Steven, A. A procedure for evaluation of significant structural differences between related arrays of protein molecules Micron (1969), Elsevi...") (current)
- 14:42, 22 October 2019 (diff | hist) . . (+92) . . Main Page (→2D Preprocessing)
- 09:58, 21 October 2019 (diff | hist) . . (+1,316) . . N 2019Tegunov Warp (Created page with "== Citation == Tegunov, D. & Cramer, P. Real-time cryo-electron microscopy data preprocessing with Warp. Nature methods, 2019 == Abstract == The acquisition of cryo-elec...") (current)
- 09:57, 21 October 2019 (diff | hist) . . (+80) . . Main Page (→Automated data collection)
- 06:26, 21 September 2019 (diff | hist) . . (+366) . . Nm User:Fsigworth (Creating user page for new user.) (current)
- 06:26, 21 September 2019 (diff | hist) . . (+310) . . Nm User talk:Fsigworth (Welcome!) (current)
- 10:13, 20 September 2019 (diff | hist) . . (+640) . . N 1974Taylor Diffraction (Created page with "== Citation == Taylor, K. A. & Glaeser, R. M. Electron diffraction of frozen, hydrated protein crystals. Science, 1974 , 186 , 1036-1037 == Abstract == High-resolution elec...") (current)
- 10:13, 20 September 2019 (diff | hist) . . (-1) . . Main Page (→Image formation)
- 10:10, 20 September 2019 (diff | hist) . . (+79) . . Main Page (→Image formation)
- 10:09, 20 September 2019 (diff | hist) . . (+957) . . N 1984Saxton Distortions (Created page with "== Citation == Saxton, W. O.; Baumeister, W. & Hahn, M. Three-dimensional reconstruction of imperfect two-dimensional crystals. Ultramicroscopy, 1984 , 13 , 57-70 == Abstr...") (current)
- 10:08, 20 September 2019 (diff | hist) . . (-8) . . Main Page (→2D Preprocessing)
- 10:07, 20 September 2019 (diff | hist) . . (+163) . . Main Page (→2D Preprocessing)
- 05:21, 4 September 2019 (diff | hist) . . (+2,532) . . N 2019Alazzawi Clustering (Created page with "== Citation == Al-Azzawi, A.; Ouadou, A.; Tanner, J. J. & Cheng, J. AutoCryoPicker: an unsupervised learning approach for fully automated single particle picking in Cryo-EM i...") (current)
- 05:10, 4 September 2019 (diff | hist) . . (+107) . . Main Page (→Automatic particle picking)
- 07:17, 2 September 2019 (diff | hist) . . (+2,091) . . N 2019Jimenez SAXS (Created page with "== Citation == Jimenez, A.; Jonic, S.; Majtner, T.; Oton, J.; Vilas, J. L.; Maluenda, D.; Mota, J.; Ramirez-Aportela, E.; Martinez, M.; Rancel, Y.; Segura, J.; Sanchez-Garcia...") (current)
- 07:05, 2 September 2019 (diff | hist) . . (+1,519) . . N 2017Kim SAXS (Created page with "== Citation == Kim, J. S.; Afsari, B. & Chirikjian, G. S. Cross-Validation of Data Compatibility Between Small Angle X-ray Scattering and Cryo-Electron Microscopy. Journal o...") (current)
- 07:04, 2 September 2019 (diff | hist) . . (+175) . . Main Page (→Relationship to other structural information sources)
- 05:52, 28 August 2019 (diff | hist) . . (+1,347) . . N 2019Hamaguchi CryoARM (Created page with "== Citation == Hamaguchi, T.; Maki-Yonekura, S.; Naitow, H.; Matsuura, Y.; Ishikawa, T. & Yonekura, K. A new cryo-EM system for single particle analysis. Journal of structur...") (current)
- 05:51, 28 August 2019 (diff | hist) . . (+68) . . Main Page (→Automated data collection)
- 05:48, 28 August 2019 (diff | hist) . . (+1,330) . . N 2019Wilkinson Scales (Created page with "== Citation == Wilkinson, M.; Kumar, A. & Casañal, A. Methods for merging data sets in electron cryo-microscopy Acta Crystallographica Section D: Structural Biology, Intern...") (current)
- 05:47, 28 August 2019 (diff | hist) . . (+87) . . Main Page (→3D Reconstruction)
- 05:36, 28 August 2019 (diff | hist) . . (+1,998) . . N 2019Huber EDXS HAADF (Created page with "== Citation == Huber, R.; Haberfehlner, G.; Holler, M.; Kothleitner, G. & Bredies, K. Total generalized variation regularization for multi-modal electron tomography. Nanosca...") (current)
- 05:35, 28 August 2019 (diff | hist) . . (+92) . . Main Page (→Relationship to other structural information sources)
- 21:57, 19 August 2019 (diff | hist) . . (+1,471) . . N 2016Aguerrebere Limits (Created page with "== Citation == Aguerrebere, C.; Delbracio, M.; Bartesaghi, A. & Sapiro, G. Fundamental Limits in Multi-Image Alignment. IEEE Transactions on Signal Processing, 2016 , 64 , 57...") (current)
- 21:56, 19 August 2019 (diff | hist) . . (+93) . . Main Page (→2D Alignment)
- 05:55, 16 August 2019 (diff | hist) . . (+116) . . Main Page (→Online courses and Learning material)
- 04:53, 12 August 2019 (diff | hist) . . (+1,721) . . N 2019Zehni Joint (Created page with "== Citation == Zehni, M.; Donati, L.; Soubies, E.; Zhao, Z. J.; Do, M. N. & Unser, M. Joint density map and continuous angular refinement in cryo-electron microscopy Electro...") (current)
- 04:53, 12 August 2019 (diff | hist) . . (+86) . . Main Page (→3D Alignment)
- 09:06, 8 August 2019 (diff | hist) . . (+70) . . Main Page (→Online courses)
- 09:03, 8 August 2019 (diff | hist) . . (+15) . . Main Page (→Online courses)
- 09:01, 8 August 2019 (diff | hist) . . (+271) . . Main Page (→Online courses)
- 20:20, 3 July 2019 (diff | hist) . . (+1,586) . . N 2019Wagner Cryolo (Created page with "== Citation == Wagner, T.; Merino, F.; Stabrin, M.; Moriya, T.; Antoni, C.; Apelbaum, A.; Hagel, P.; Sitsel, O.; Raisch, T.; Prumbaum, D.; Quentin, D.; Roderer, D.; Tacke, S....") (current)
- 20:18, 3 July 2019 (diff | hist) . . (+75) . . Main Page (→Automatic particle picking)
- 20:11, 3 July 2019 (diff | hist) . . (+1,488) . . N 2018Sorzano Swarm (Created page with "== Citation == Sorzano, C. O. S.; Vargas, J.; Vilas, J. L.; Jiménez-Moreno, A.; Mota, J.; Majtner, T.; Maluenda, D.; Martínez, M.; Sánchez-García, R.; Segura, J.; Otón,...") (current)
- 20:07, 3 July 2019 (diff | hist) . . (+98) . . Main Page (→3D Reconstruction)
- 20:07, 3 July 2019 (diff | hist) . . (+98) . . Main Page (→3D Alignment)
- 05:59, 2 July 2019 (diff | hist) . . (+1,478) . . N 2018Hu ParticleFilter (Created page with "== Citation == Hu, M.; Yu, H.; Gu, K.; Wang, Z.; Ruan, H.; Wang, K.; Ren, S.; Li, B.; Gan, L.; Xu, S.; Yang, G.; Shen, Y. & Li, X. A particle-filter framework for robust cryo...") (current)
- 05:55, 2 July 2019 (diff | hist) . . (+93) . . Main Page (→3D Reconstruction)
- 05:47, 2 July 2019 (diff | hist) . . (+1,190) . . N 2015Rosenthal Review (Created page with "== Citation == Rosenthal, P. B. & Rubinstein, J. L. Validating maps from single particle electron cryomicroscopy. Current opinion in structural biology, 2015 , 34 , 135-144...") (current)
- 05:46, 2 July 2019 (diff | hist) . . (+71) . . Main Page (→Validation)
- 05:40, 2 July 2019 (diff | hist) . . (+1,883) . . N 2018Shuo Network (Created page with "== Citation == Shuo, Y.; Zhang, B.; Shen, H. & Yang, Y. NCEM: Network structural similarity metric-based clustering for noisy cryo-EM single particle images Proc. Chinese Au...") (current)
- 05:39, 2 July 2019 (diff | hist) . . (+77) . . Main Page (→2D Classification and clustering)
- 05:34, 2 July 2019 (diff | hist) . . (+2,081) . . N 2019Serna Review (Created page with "== Citation == Serna, M. Hands on Methods for High Resolution Cryo-Electron Microscopy Structures of Heterogeneous Macromolecular Complexes. Frontiers in molecular bioscienc...") (current)
- 05:32, 2 July 2019 (diff | hist) . . (+70) . . Main Page (→3D Heterogeneity)
- 05:26, 2 July 2019 (diff | hist) . . (+1,558) . . N 2018Bell EMAN2 (Created page with "== Citation == Bell, J. M.; Chen, M.; Durmaz, T.; Fluty, A. C. & Ludtke, S. J. New software tools in EMAN2 inspired by EMDatabank map challenge. Journal of structural biolog...") (current)
- 05:25, 2 July 2019 (diff | hist) . . (+55) . . Main Page (→Software)
- 07:53, 27 June 2019 (diff | hist) . . (+1,213) . . N 2019Lyumkis Review (Created page with "== Citation == Lyumkis, D. Challenges and opportunities in cryo-EM single-particle analysis. The Journal of biological chemistry, 2019 , 294 , 5181-5197 == Abstract == Cr...") (current)
- 07:52, 27 June 2019 (diff | hist) . . (+63) . . Main Page (→Books and reviews)
- 07:08, 27 June 2019 (diff | hist) . . (+1,413) . . N 2018Afonine Phenix (Created page with "== Citation == Afonine, P. V.; Klaholz, B. P.; Moriarty, N. W.; Poon, B. K.; Sobolev, O. V.; Terwilliger, T. C.; Adams, P. D. & Urzhumtsev, A. New tools for the analysis and...") (current)
- 07:07, 27 June 2019 (diff | hist) . . (+86) . . Main Page (→Validation)
- 05:39, 24 June 2019 (diff | hist) . . (+1,685) . . N 2008Herman Graph (Created page with "== Citation == Herman, G. T. & Kalinowski, M. Classification of heterogeneous electron microscopic projections into homogeneous subsets. Ultramicroscopy, 2008 , 108 , 327-33...") (current)
- 05:38, 24 June 2019 (diff | hist) . . (+75) . . Main Page (→3D Heterogeneity)
- 22:53, 9 June 2019 (diff | hist) . . (+1,087) . . N 2019Eng ImageCompression (Created page with "== Citation == Eng, E. T.; Kopylov, M.; Negro, C. J.; Dallaykan, S.; Rice, W. J.; Jordan, K. D.; Kelley, K.; Carragher, B. & Potter, C. S. Reducing cryoEM file storage using...") (current)
- 22:52, 9 June 2019 (diff | hist) . . (+87) . . Main Page (→Automated data collection)
- 22:43, 9 June 2019 (diff | hist) . . (+1,109) . . N 2019DImprima Denaturation (Created page with "== Citation == D'Imprima, E.; Floris, D.; Joppe, M.; Sánchez, R.; Grininger, M. & Kühlbrandt, W. Protein denaturation at the air-water interface and how to prevent it. eLi...") (current)
- 22:41, 9 June 2019 (diff | hist) . . (+116) . . Main Page (→Sample preparation)
- 22:34, 9 June 2019 (diff | hist) . . (+1,756) . . N 2019Radermacher Correlation (Created page with "== Citation == Radermacher, M. & Ruiz, T. On cross-correlations, averages and noise in electron microscopy. Acta crystallographica. Section F, Structural biology communicati...") (current)
- 22:33, 9 June 2019 (diff | hist) . . (+116) . . Main Page (→2D Alignment)
- 05:33, 7 June 2019 (diff | hist) . . (+1,362) . . N 2010Yu PPCA (Created page with "== Citation == Yu, L.; Snapp, R. R.; Ruiz, T. & Radermacher, M. Probabilistic principal component analysis with expectation maximization (PPCA-EM) facilitates volume classifi...") (current)
- 05:32, 7 June 2019 (diff | hist) . . (+76) . . Main Page (→Subtomogram analysis)
- 05:27, 7 June 2019 (diff | hist) . . (+1,474) . . N 2019Schur Review (Created page with "== Citation == Schur, F. K. Toward high-resolution in situ structural biology with cryo-electron tomography and subtomogram averaging. Current opinion in structural biology,...") (current)
- 05:26, 7 June 2019 (diff | hist) . . (+94) . . Main Page (→Books and reviews)
- 05:22, 7 June 2019 (diff | hist) . . (+1,777) . . N 2019Song FalconIII (Created page with "== Citation == Song, B.; Lenhart, J.; Flegler, V. J.; Makbul, C.; Rasmussen, T. & Böttcher, B. Capabilities of the Falcon III detector for single-particle structure determin...") (current)
- 05:21, 7 June 2019 (diff | hist) . . (+77) . . Main Page (→Sample preparation)
- 05:16, 7 June 2019 (diff | hist) . . (+1,389) . . N 2019 Pothula (Created page with "== Citation == Pothula, K. R.; Smyrnova, D. & Schroder, G. F. Clustering cryo-EM images of helical protein polymers for helical reconstructions. Ultramicroscopy, 2019 , 203 ,...") (current)
- 05:15, 7 June 2019 (diff | hist) . . (+72) . . Main Page (→Reconstruction)
- 13:59, 3 June 2019 (diff | hist) . . (+1,725) . . N 2019Zhang CoarseGrained (Created page with "== Citation == Zhang, Y.; Xia, K.; Cao, Z.; Gräter, F. & Xia, F. A new method for the construction of coarse-grained models of large biomolecules from low-resolution cryo-el...") (current)
- 13:58, 3 June 2019 (diff | hist) . . (+72) . . Main Page (→Fitting and docking)
- 05:42, 16 May 2019 (diff | hist) . . (+1,870) . . N 2013Yu Projection (Created page with "== Citation == Yu, L.; Snapp, R. R.; Ruiz, T. & Radermacher, M. Projection-based volume alignment. Journal of structural biology, 2013 , 182 , 93-105 == Abstract == When...") (current)
- 05:41, 16 May 2019 (diff | hist) . . (+90) . . Main Page (→Subtomogram analysis)
- 05:35, 16 May 2019 (diff | hist) . . (+1,250) . . N 2018Arnold Review (Created page with "== Citation == Arnold, S. A.; Müller, S. A.; Schmidli, C.; Syntychaki, A.; Rima, L.; Chami, M.; Stahlberg, H.; Goldie, K. N. & Braun, T. Miniaturizing EM Sample Preparation:...") (current)
- 05:33, 16 May 2019 (diff | hist) . . (+116) . . Main Page (→Sample preparation)
- 05:29, 16 May 2019 (diff | hist) . . (+2,656) . . N 2018Schmidli Miniaturized (Created page with "== Citation == Schmidli, C.; Rima, L.; Arnold, S. A.; Stohler, T.; Syntychaki, A.; Bieri, A.; Albiez, S.; Goldie, K. N.; Chami, M.; Stahlberg, H. & Braun, T. Miniaturized Sam...") (current)
- 05:29, 16 May 2019 (diff | hist) . . (+87) . . Main Page (→Sample preparation)
- 05:22, 16 May 2019 (diff | hist) . . (+1,620) . . N 2010Xu Long (Created page with "== Citation == Xu, W.; Xu, F.; Jones, M.; Keszthelyi, B.; Sedat, J.; Agard, D. & Mueller, K. High-performance iterative electron tomography reconstruction with long-object co...") (current)
- 05:20, 16 May 2019 (diff | hist) . . (+110) . . Main Page (→3D reconstruction)
- 16:10, 13 May 2019 (diff | hist) . . (+2,081) . . N 2016Turonova Artifacts (Created page with "== Citation == Turoňová, B.; Marsalek, L. & Slusallek, P. On geometric artifacts in cryo electron tomography. Ultramicroscopy, 2016 , 163 , 48-61 == Abstract == Single-...") (current)
- 16:09, 13 May 2019 (diff | hist) . . (+88) . . Main Page (→3D reconstruction)
- 12:15, 13 May 2019 (diff | hist) . . (+1,323) . . N 2019Yan MBIR (Created page with "== Citation == Yan, R.; Venkatakrishnan, S. V.; Liu, J.; Bouman, C. A.; Jiang, W. MBIR: A cryo-ET 3D reconstruction method that effectively minimizes missing wedge artifacts...") (current)
- 12:14, 13 May 2019 (diff | hist) . . (+115) . . Main Page (→3D reconstruction)
- 12:13, 13 May 2019 (diff | hist) . . (-1) . . 2015Venkatakrishnan MBIR (current)
- 12:12, 13 May 2019 (diff | hist) . . (+1,836) . . N 2015Venkatakrishnan MBIR (Created page with "== Citation == Venkatakrishnan, S. V.; Drummy, L. F.; Jackson, M.; De Graef, M.; Simmons, J.; Bouman, C. A. Model-Based Iterative Reconstruction for Bright-Field Electron T...")
- 12:08, 13 May 2019 (diff | hist) . . (+76) . . Main Page (→3D reconstruction)
- 15:34, 6 May 2019 (diff | hist) . . (+1,698) . . N 2019Zhang Local (Created page with "== Citation == Zhang, C.; Cantara, W.; Jeon, Y.; Musier-Forsyth, K.; Grigorieff, N. & Lyumkis, D. Analysis of discrete local variability and structural covariance in macromol...") (current)
- 15:33, 6 May 2019 (diff | hist) . . (+70) . . Main Page (→3D Heterogeneity)
- 12:12, 3 May 2019 (diff | hist) . . (+1,749) . . N 2019Peet EnergyDependence (Created page with "== Citation == Peet, M. J.; Henderson, R. & Russo, C. J. The energy dependence of contrast and damage in electron cryomicroscopy of biological molecules. Ultramicroscopy, 201...") (current)
- 12:11, 3 May 2019 (diff | hist) . . (+85) . . Main Page (→Image formation)
- 17:40, 17 April 2019 (diff | hist) . . (+2,080) . . N 2018Cheng BeamShift (Created page with "== Citation == Cheng, A.; Eng, E. T.; Alink, L.; Rice, W. J.; Jordan, K. D.; Kim, L. Y.; Potter, C. S. & Carragher, B. High resolution single particle cryo-electron microscop...") (current)
- 17:39, 17 April 2019 (diff | hist) . . (+83) . . Main Page (→Collection geometry)
- 17:30, 17 April 2019 (diff | hist) . . (+1,335) . . N 2019Herzik Multimodel (Created page with "== Citation == Herzik, M. A.; Fraser, J. S. & Lander, G. C. A Multi-model Approach to Assessing Local and Global Cryo-EM Map Quality. Structure, 2019, 27, 344-358.e3 == Abs...") (current)
- 17:28, 17 April 2019 (diff | hist) . . (+91) . . Main Page (→Validation)
- 17:24, 17 April 2019 (diff | hist) . . (+10) . . 2018Su GoCTF (current)
- 17:12, 17 April 2019 (diff | hist) . . (+1,413) . . N 2018Anoshina Simulation (Created page with "== Citation == Anoshina, N.; Sagindykov, T. & Sorokin, D. A Method for Generation of Synthetic 2D and 3D Cryo-EM Images. Programming and Computer Software, Springer, 2018, 44...") (current)
- 17:11, 17 April 2019 (diff | hist) . . (+79) . . Main Page (→Image formation)
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