User contributions
From 3DEM-Methods
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- 21:18, 3 March 2020 (diff | hist) . . (+163) . . Main Page (→Reconstruction)
- 12:52, 2 March 2020 (diff | hist) . . (+1,590) . . N 2020Joseph comparison (Created page with "== Citation == Joseph, A. P.; Lagerstedt, I.; Jakobi, A.; Burnley, T.; Patwardhan, A.; Topf, M. & Winn, M. Comparing Cryo-EM Reconstructions and Validating Atomic Model Fit U...") (current)
- 12:51, 2 March 2020 (diff | hist) . . (+84) . . Main Page (→Fitting and docking)
- 20:57, 24 February 2020 (diff | hist) . . (+2,172) . . N 2020Vilas Bfactor (Created page with "== Citation == Vilas, J. L.; Vargas, J.; Martinez, M.; Ramirez-Aportela, E.; Melero, R.; Jimenez-Moreno, A.; Garduño, E.; Conesa, P.; Marabini, R.; Maluenda, D.; Carazo, J....") (current)
- 20:57, 24 February 2020 (diff | hist) . . (+100) . . Main Page (→Sharpening of high resolution information)
- 20:52, 24 February 2020 (diff | hist) . . (+1,672) . . N 2020Stojkovic PTM (Created page with "== Citation == Stojković, V.; Myasnikov, A. G.; Young, I. D.; Frost, A.; Fraser, J. S. & Fujimori, D. G. Assessment of the nucleotide modifications in the high-resolution cr...") (current)
- 20:51, 24 February 2020 (diff | hist) . . (+86) . . Main Page (→Validation)
- 05:26, 21 February 2020 (diff | hist) . . (+1,750) . . N 2010Pintilie segger (Created page with "== Citation == Pintilie, G. D.; Zhang, J.; Goddard, T. D.; Chiu, W. & Gossard, D. C. Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space fi...") (current)
- 05:25, 21 February 2020 (diff | hist) . . (+76) . . Main Page (→Segmentation)
- 05:59, 14 February 2020 (diff | hist) . . (+991) . . N 2018Rupp Problems (Created page with "== Citation == Rupp, B. Against Method: Table 1-Cui Bono? Structure, 2018 , 26 , 919-923 == Abstract == The almost universally required "Table 1," summarizing data-collec...") (current)
- 05:58, 14 February 2020 (diff | hist) . . (+96) . . Main Page (→Resolution)
- 22:02, 14 January 2020 (diff | hist) . . (+1,413) . . N 2019Li Deep (Created page with "== Citation == Li, X.; Lin, Y.; Liu, Q.; McSweeney, S. & Yoo, S. Picking Particles in Cryo-EM Micrographs without Knowing the Particle Size 2019 New York Scientific Data Sum...") (current)
- 22:01, 14 January 2020 (diff | hist) . . (+90) . . Main Page (→Automatic particle picking)
- 21:52, 14 January 2020 (diff | hist) . . (+1,500) . . N 2019Wu BeamShiftAndTilt (Created page with "== Citation == Wu, C.; Huang, X.; Cheng, J.; Zhu, D. & Zhang, X. High-quality, high-throughput cryo-electron microscopy data collection via beam tilt and astigmatism-free bea...") (current)
- 21:51, 14 January 2020 (diff | hist) . . (+109) . . Main Page (→Collection geometry)
- 19:08, 7 January 2020 (diff | hist) . . (+1,525) . . N 2019Maluenda Scipion (Created page with "== Citation == Maluenda, D.; Majtner, T.; Horvath, P.; Vilas, J. L.; Jiménez-Moreno, A.; Mota, J.; Ramírez-Aportela, E.; Sánchez-García, R.; Conesa, P.; Del Caño, L.; Ra...") (current)
- 19:07, 7 January 2020 (diff | hist) . . (+87) . . Main Page (→Automated data collection)
- 19:00, 7 January 2020 (diff | hist) . . (+986) . . N 2020Vilas MonoDir (Created page with "== Citation == Vilas, J. L.; Tagare, H. D.; Vargas, J.; Carazo, J. M. & Sorzano, C. O. S. Measuring local-directional resolution and local anisotropy in cryo-EM maps. Nature...") (current)
- 18:59, 7 January 2020 (diff | hist) . . (+72) . . Main Page (→Resolution)
- 18:56, 7 January 2020 (diff | hist) . . (+2,191) . . N 2020Harastani NMA (Created page with "== Citation == Harastani, M.; Sorzano, C. O. S. & Jonić, S. Hybrid Electron Microscopy Normal Mode Analysis with Scipion. Protein science, 2020 , 29 , 223-236 == Abstract...") (current)
- 18:55, 7 January 2020 (diff | hist) . . (+105) . . Main Page (→3D Heterogeneity)
- 07:54, 27 December 2019 (diff | hist) . . (+1,371) . . N 2019Carrasco IP (Created page with "== Citation == Carrasco, M.; Toledo, P. & Tischler, N. D. Macromolecule Particle Picking and Segmentation of a KLH Database by Unsupervised Cryo-EM Image Processing. Biomole...") (current)
- 07:53, 27 December 2019 (diff | hist) . . (+91) . . Main Page (→Automatic particle picking)
- 07:45, 27 December 2019 (diff | hist) . . (+1,177) . . N 2019Benjin Review (Created page with "== Citation == Benjin, X. & Ling, L. Developments, applications, and prospects of cryo-electron microscopy. Protein science, 2019, 1-11 == Abstract == Cryo-electron micros...") (current)
- 07:43, 27 December 2019 (diff | hist) . . (+54) . . Main Page (→Books and reviews)
- 07:32, 27 December 2019 (diff | hist) . . (+2,030) . . N 2019Gomez Initial (Created page with "== Citation == Gomez-Blanco, J.; Kaur, S.; Ortega, J. & Vargas, J. A robust approach to ab initio cryo-electron microscopy initial volume determination. J. Structural Biolog...") (current)
- 07:30, 27 December 2019 (diff | hist) . . (+69) . . Main Page (→3D Reconstruction)
- 07:48, 30 November 2019 (diff | hist) . . (-4) . . 2016Murshudov Refinement (→Citation) (current)
- 07:48, 30 November 2019 (diff | hist) . . (+1,822) . . N 2016Murshudov Refinement (Created page with "== Citation == Murshudov, G. N. Refinement of atomic structures against cryo-EM maps Methods in enzymology, 2016, 579, 277-305 == Abstract == This review describes so...")
- 07:47, 30 November 2019 (diff | hist) . . (+108) . . Main Page (→Fitting and docking)
- 20:51, 9 November 2019 (diff | hist) . . (+611) . . N 2019Bepler Topaz (Created page with "== Citation == Bepler, T.; Morin, A.; Rapp, M.; Brasch, J.; Shapiro, L.; Noble, A. J. & Berger, B. TOPAZ: A Positive-Unlabeled Convolutional Neural Network CryoEM Particle Pi...") (current)
- 20:49, 9 November 2019 (diff | hist) . . (+74) . . Main Page (→Automatic particle picking)
- 21:03, 7 November 2019 (diff | hist) . . (+1,382) . . N 2019Ramirez DeepRes (Created page with "== Citation == Ramírez-Aportela, E.; Mota, J.; Conesa, P.; Carazo, J. M. & Sorzano, C. O. S. DeepRes: a new deep-learning- and aspect-based local resolution method for elect...") (current)
- 21:03, 7 November 2019 (diff | hist) . . (+83) . . Main Page (→Resolution)
- 20:56, 7 November 2019 (diff | hist) . . (+2,176) . . N 2019Han Constrained (Created page with "== Citation == Han, R.; Li, L.; Yang, P.; Zhang, F. & Gao, X. A novel constrained reconstruction model towards high-resolution sub-tomogram averaging. Bioinformatics (Oxford...") (current)
- 20:55, 7 November 2019 (diff | hist) . . (+89) . . Main Page (→Subtomogram analysis)
- 20:48, 7 November 2019 (diff | hist) . . (+1,071) . . N 2019Goetschius Asymmetric (Created page with "== Citation == Goetschius, D. J.; Lee, H. & Hafenstein, S. CryoEM reconstruction approaches to resolve asymmetric features. Advances in virus research, 2019 , 105 , 73-91...") (current)
- 20:47, 7 November 2019 (diff | hist) . . (+104) . . Main Page (→Reconstruction)
- 20:39, 7 November 2019 (diff | hist) . . (+983) . . N 2019Fokine Enhancement (Created page with "== Citation == Fokine, A.; Khare, B.; Sun, Y. & Rossmann, M. G. Enhancement of tomogram interpretability using the locked self-rotation function. Journal of structural biolo...") (current)
- 20:39, 7 November 2019 (diff | hist) . . (+100) . . Main Page (→Subtomogram analysis)
- 20:34, 7 November 2019 (diff | hist) . . (+1,154) . . N 2019Danev Review (Created page with "== Citation == Danev, R.; Yanagisawa, H. & Kikkawa, M. Cryo-Electron Microscopy Methodology: Current Aspects and Future Directions. Trends in biochemical sciences, 2019 , 44...") (current)
- 20:33, 7 November 2019 (diff | hist) . . (+66) . . Main Page (→Books and reviews)
- 20:15, 7 November 2019 (diff | hist) . . (+1,902) . . N 2019Ohashi SoftBody (Created page with "== Citation == Ohashi, M.; Maeda, S.-i. & Sato, C. Bayesian inference for three-dimensional helical reconstruction using a soft-body model Physical Review E, APS, 2019 , 100...") (current)
- 20:14, 7 November 2019 (diff | hist) . . (+98) . . Main Page (→Filament corrections)
- 19:57, 7 November 2019 (diff | hist) . . (+395) . . N 2019Klaholz Review (Created page with "== Citation == Klaholz, B. P. Deriving and refining atomic models in crystallography and cryo-EM: the latest Phenix tools to facilitate structure analysis. Acta crystallogra...") (current)
- 19:56, 7 November 2019 (diff | hist) . . (+76) . . Main Page (→Fitting and docking)
- 14:45, 22 October 2019 (diff | hist) . . (+879) . . N 1978Carrascosa matching (Created page with "== Citation == Carrascosa, J. & Steven, A. A procedure for evaluation of significant structural differences between related arrays of protein molecules Micron (1969), Elsevi...") (current)
- 14:42, 22 October 2019 (diff | hist) . . (+92) . . Main Page (→2D Preprocessing)
- 09:58, 21 October 2019 (diff | hist) . . (+1,316) . . N 2019Tegunov Warp (Created page with "== Citation == Tegunov, D. & Cramer, P. Real-time cryo-electron microscopy data preprocessing with Warp. Nature methods, 2019 == Abstract == The acquisition of cryo-elec...") (current)
- 09:57, 21 October 2019 (diff | hist) . . (+80) . . Main Page (→Automated data collection)
- 06:26, 21 September 2019 (diff | hist) . . (+366) . . Nm User:Fsigworth (Creating user page for new user.) (current)
- 06:26, 21 September 2019 (diff | hist) . . (+310) . . Nm User talk:Fsigworth (Welcome!) (current)
- 10:13, 20 September 2019 (diff | hist) . . (+640) . . N 1974Taylor Diffraction (Created page with "== Citation == Taylor, K. A. & Glaeser, R. M. Electron diffraction of frozen, hydrated protein crystals. Science, 1974 , 186 , 1036-1037 == Abstract == High-resolution elec...") (current)
- 10:13, 20 September 2019 (diff | hist) . . (-1) . . Main Page (→Image formation)
- 10:10, 20 September 2019 (diff | hist) . . (+79) . . Main Page (→Image formation)
- 10:09, 20 September 2019 (diff | hist) . . (+957) . . N 1984Saxton Distortions (Created page with "== Citation == Saxton, W. O.; Baumeister, W. & Hahn, M. Three-dimensional reconstruction of imperfect two-dimensional crystals. Ultramicroscopy, 1984 , 13 , 57-70 == Abstr...") (current)
- 10:08, 20 September 2019 (diff | hist) . . (-8) . . Main Page (→2D Preprocessing)
- 10:07, 20 September 2019 (diff | hist) . . (+163) . . Main Page (→2D Preprocessing)
- 05:21, 4 September 2019 (diff | hist) . . (+2,532) . . N 2019Alazzawi Clustering (Created page with "== Citation == Al-Azzawi, A.; Ouadou, A.; Tanner, J. J. & Cheng, J. AutoCryoPicker: an unsupervised learning approach for fully automated single particle picking in Cryo-EM i...") (current)
- 05:10, 4 September 2019 (diff | hist) . . (+107) . . Main Page (→Automatic particle picking)
- 07:17, 2 September 2019 (diff | hist) . . (+2,091) . . N 2019Jimenez SAXS (Created page with "== Citation == Jimenez, A.; Jonic, S.; Majtner, T.; Oton, J.; Vilas, J. L.; Maluenda, D.; Mota, J.; Ramirez-Aportela, E.; Martinez, M.; Rancel, Y.; Segura, J.; Sanchez-Garcia...") (current)
- 07:05, 2 September 2019 (diff | hist) . . (+1,519) . . N 2017Kim SAXS (Created page with "== Citation == Kim, J. S.; Afsari, B. & Chirikjian, G. S. Cross-Validation of Data Compatibility Between Small Angle X-ray Scattering and Cryo-Electron Microscopy. Journal o...") (current)
- 07:04, 2 September 2019 (diff | hist) . . (+175) . . Main Page (→Relationship to other structural information sources)
- 05:52, 28 August 2019 (diff | hist) . . (+1,347) . . N 2019Hamaguchi CryoARM (Created page with "== Citation == Hamaguchi, T.; Maki-Yonekura, S.; Naitow, H.; Matsuura, Y.; Ishikawa, T. & Yonekura, K. A new cryo-EM system for single particle analysis. Journal of structur...") (current)
- 05:51, 28 August 2019 (diff | hist) . . (+68) . . Main Page (→Automated data collection)
- 05:48, 28 August 2019 (diff | hist) . . (+1,330) . . N 2019Wilkinson Scales (Created page with "== Citation == Wilkinson, M.; Kumar, A. & Casañal, A. Methods for merging data sets in electron cryo-microscopy Acta Crystallographica Section D: Structural Biology, Intern...") (current)
- 05:47, 28 August 2019 (diff | hist) . . (+87) . . Main Page (→3D Reconstruction)
- 05:36, 28 August 2019 (diff | hist) . . (+1,998) . . N 2019Huber EDXS HAADF (Created page with "== Citation == Huber, R.; Haberfehlner, G.; Holler, M.; Kothleitner, G. & Bredies, K. Total generalized variation regularization for multi-modal electron tomography. Nanosca...") (current)
- 05:35, 28 August 2019 (diff | hist) . . (+92) . . Main Page (→Relationship to other structural information sources)
- 21:57, 19 August 2019 (diff | hist) . . (+1,471) . . N 2016Aguerrebere Limits (Created page with "== Citation == Aguerrebere, C.; Delbracio, M.; Bartesaghi, A. & Sapiro, G. Fundamental Limits in Multi-Image Alignment. IEEE Transactions on Signal Processing, 2016 , 64 , 57...") (current)
- 21:56, 19 August 2019 (diff | hist) . . (+93) . . Main Page (→2D Alignment)
- 05:55, 16 August 2019 (diff | hist) . . (+116) . . Main Page (→Online courses and Learning material)
- 04:53, 12 August 2019 (diff | hist) . . (+1,721) . . N 2019Zehni Joint (Created page with "== Citation == Zehni, M.; Donati, L.; Soubies, E.; Zhao, Z. J.; Do, M. N. & Unser, M. Joint density map and continuous angular refinement in cryo-electron microscopy Electro...") (current)
- 04:53, 12 August 2019 (diff | hist) . . (+86) . . Main Page (→3D Alignment)
- 09:06, 8 August 2019 (diff | hist) . . (+70) . . Main Page (→Online courses)
- 09:03, 8 August 2019 (diff | hist) . . (+15) . . Main Page (→Online courses)
- 09:01, 8 August 2019 (diff | hist) . . (+271) . . Main Page (→Online courses)
- 20:20, 3 July 2019 (diff | hist) . . (+1,586) . . N 2019Wagner Cryolo (Created page with "== Citation == Wagner, T.; Merino, F.; Stabrin, M.; Moriya, T.; Antoni, C.; Apelbaum, A.; Hagel, P.; Sitsel, O.; Raisch, T.; Prumbaum, D.; Quentin, D.; Roderer, D.; Tacke, S....") (current)
- 20:18, 3 July 2019 (diff | hist) . . (+75) . . Main Page (→Automatic particle picking)
- 20:11, 3 July 2019 (diff | hist) . . (+1,488) . . N 2018Sorzano Swarm (Created page with "== Citation == Sorzano, C. O. S.; Vargas, J.; Vilas, J. L.; Jiménez-Moreno, A.; Mota, J.; Majtner, T.; Maluenda, D.; Martínez, M.; Sánchez-García, R.; Segura, J.; Otón,...") (current)
- 20:07, 3 July 2019 (diff | hist) . . (+98) . . Main Page (→3D Reconstruction)
- 20:07, 3 July 2019 (diff | hist) . . (+98) . . Main Page (→3D Alignment)
- 05:59, 2 July 2019 (diff | hist) . . (+1,478) . . N 2018Hu ParticleFilter (Created page with "== Citation == Hu, M.; Yu, H.; Gu, K.; Wang, Z.; Ruan, H.; Wang, K.; Ren, S.; Li, B.; Gan, L.; Xu, S.; Yang, G.; Shen, Y. & Li, X. A particle-filter framework for robust cryo...") (current)
- 05:55, 2 July 2019 (diff | hist) . . (+93) . . Main Page (→3D Reconstruction)
- 05:47, 2 July 2019 (diff | hist) . . (+1,190) . . N 2015Rosenthal Review (Created page with "== Citation == Rosenthal, P. B. & Rubinstein, J. L. Validating maps from single particle electron cryomicroscopy. Current opinion in structural biology, 2015 , 34 , 135-144...") (current)
- 05:46, 2 July 2019 (diff | hist) . . (+71) . . Main Page (→Validation)
- 05:40, 2 July 2019 (diff | hist) . . (+1,883) . . N 2018Shuo Network (Created page with "== Citation == Shuo, Y.; Zhang, B.; Shen, H. & Yang, Y. NCEM: Network structural similarity metric-based clustering for noisy cryo-EM single particle images Proc. Chinese Au...") (current)
- 05:39, 2 July 2019 (diff | hist) . . (+77) . . Main Page (→2D Classification and clustering)
- 05:34, 2 July 2019 (diff | hist) . . (+2,081) . . N 2019Serna Review (Created page with "== Citation == Serna, M. Hands on Methods for High Resolution Cryo-Electron Microscopy Structures of Heterogeneous Macromolecular Complexes. Frontiers in molecular bioscienc...") (current)
- 05:32, 2 July 2019 (diff | hist) . . (+70) . . Main Page (→3D Heterogeneity)
- 05:26, 2 July 2019 (diff | hist) . . (+1,558) . . N 2018Bell EMAN2 (Created page with "== Citation == Bell, J. M.; Chen, M.; Durmaz, T.; Fluty, A. C. & Ludtke, S. J. New software tools in EMAN2 inspired by EMDatabank map challenge. Journal of structural biolog...") (current)
- 05:25, 2 July 2019 (diff | hist) . . (+55) . . Main Page (→Software)
- 07:53, 27 June 2019 (diff | hist) . . (+1,213) . . N 2019Lyumkis Review (Created page with "== Citation == Lyumkis, D. Challenges and opportunities in cryo-EM single-particle analysis. The Journal of biological chemistry, 2019 , 294 , 5181-5197 == Abstract == Cr...") (current)
- 07:52, 27 June 2019 (diff | hist) . . (+63) . . Main Page (→Books and reviews)
- 07:08, 27 June 2019 (diff | hist) . . (+1,413) . . N 2018Afonine Phenix (Created page with "== Citation == Afonine, P. V.; Klaholz, B. P.; Moriarty, N. W.; Poon, B. K.; Sobolev, O. V.; Terwilliger, T. C.; Adams, P. D. & Urzhumtsev, A. New tools for the analysis and...") (current)
- 07:07, 27 June 2019 (diff | hist) . . (+86) . . Main Page (→Validation)
- 05:39, 24 June 2019 (diff | hist) . . (+1,685) . . N 2008Herman Graph (Created page with "== Citation == Herman, G. T. & Kalinowski, M. Classification of heterogeneous electron microscopic projections into homogeneous subsets. Ultramicroscopy, 2008 , 108 , 327-33...") (current)
- 05:38, 24 June 2019 (diff | hist) . . (+75) . . Main Page (→3D Heterogeneity)
- 22:53, 9 June 2019 (diff | hist) . . (+1,087) . . N 2019Eng ImageCompression (Created page with "== Citation == Eng, E. T.; Kopylov, M.; Negro, C. J.; Dallaykan, S.; Rice, W. J.; Jordan, K. D.; Kelley, K.; Carragher, B. & Potter, C. S. Reducing cryoEM file storage using...") (current)
- 22:52, 9 June 2019 (diff | hist) . . (+87) . . Main Page (→Automated data collection)
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