User contributions
From 3DEM-Methods
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- 07:22, 16 July 2020 (diff | hist) . . (+1,458) . . N 2020Dodd ModelBuilding (Created page with "== Citation == Dodd, T.; Yan, C.; Ivanov, I. Simulation-Based Methods for Model Building and Refinement in Cryoelectron Microscopy. Journal of chemical information and modeli...") (current)
- 07:20, 16 July 2020 (diff | hist) . . (+116) . . Main Page (→Fitting and docking)
- 17:24, 15 July 2020 (diff | hist) . . (+1,462) . . N 2020Terashi MainMastSeg (Created page with "== Citation == Terashi, G.; Kagaya, Y. ; Kihara, D. MAINMASTseg: Automated Map Segmentation Method for Cryo-EM Density Maps with Symmetry. Journal of chemical information and...") (current)
- 17:23, 15 July 2020 (diff | hist) . . (+83) . . Main Page (→Segmentation)
- 09:17, 15 July 2020 (diff | hist) . . (+1,000) . . N 2020Zivanov HighOrder (Created page with "== Citation == Zivanov, J.; Nakane, T., Scheres, S. H. W. Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in Relion-3.1. IUCrJ, 2020...") (current)
- 09:15, 15 July 2020 (diff | hist) . . (+80) . . Main Page (→CTF estimation and restoration)
- 09:06, 15 July 2020 (diff | hist) . . (+1,491) . . N 2020Ramlaul Sidesplitter (Created page with "== Citation == Ramlaul, K.; Palmer, C. M.; Nakane, T., Aylett, C. H. S. Mitigating local over-fitting during single particle reconstruction with SIDESPLITTER. Journal of stru...") (current)
- 09:05, 15 July 2020 (diff | hist) . . (+98) . . Main Page (→3D Reconstruction)
- 08:55, 15 July 2020 (diff | hist) . . (+2,335) . . N 2020Xie Automatic (Created page with "== Citation == Xie, R.; Chen, Y.-X.; Cai, J.-M.; Yang, Y., Shen, H.-B. SPREAD: A Fully Automated Toolkit for Single-Particle Cryogenic Electron Microscopy Data 3D Reconstruct...") (current)
- 08:54, 15 July 2020 (diff | hist) . . (+84) . . Main Page (→3D Reconstruction)
- 07:23, 9 July 2020 (diff | hist) . . (+1,652) . . N 2020Miolane VAEGAN (Created page with "== Citation == Miolane, N.; Poitevin, F.; Li, Y.-T., Holmes, S. Estimation of orientation and camera parameters from cryo-electron microscopy images with variational autoenco...") (current)
- 07:22, 9 July 2020 (diff | hist) . . (+75) . . Main Page (→2D Classification and clustering)
- 07:11, 9 July 2020 (diff | hist) . . (+1,051) . . N 2020Marshall Invariants (Created page with "== Citation == Marshall, N. F.; Lan, T.-Y.; Bendory, T., Singer, A. Image recovery from rotational and translational invariants. Proc. IEEE Intl. Conf. ICASSP, 2020, 5780-578...") (current)
- 07:10, 9 July 2020 (diff | hist) . . (+86) . . Main Page (→2D Alignment)
- 07:51, 8 July 2020 (diff | hist) . . (+105) . . Main Page (→Online courses and Learning material)
- 02:46, 8 July 2020 (diff | hist) . . (+1,986) . . N 2014Penczek CTER (Created page with "== Citation == Penczek, P. A. and Fang, J. and Li, X. and Cheng, Y. and Loerke, J. and Spahn, C. M. T. CTER-rapid Estimation of CTF Parameters With Error Assessment. Ultramic...") (current)
- 02:44, 8 July 2020 (diff | hist) . . (+67) . . Main Page (→CTF estimation and restoration)
- 09:50, 7 July 2020 (diff | hist) . . (+1,290) . . N 2020Li Workflow (Created page with "== Citation == Li, Y.; Cash, J. N.; Tesmer, J. J. G., Cianfrocco, M. A. High-Throughput Cryo-EM Enabled by User-Free Preprocessing Routines. Structure, 2020 == Abstract ==...") (current)
- 09:48, 7 July 2020 (diff | hist) . . (+75) . . Main Page (→Automated data collection)
- 09:00, 7 July 2020 (diff | hist) . . (+1,615) . . N 2020Vilas Review (Created page with "== Citation == Vilas, JL, Heymann, JB, Tagare, H, Ramirez-Aportela, E, Carazo, JM, Sorzano, COS. Local resolution estimates of cryoEM reconstructions. Current Opinion in Stru...") (current)
- 08:57, 7 July 2020 (diff | hist) . . (+65) . . Main Page (→Books and reviews)
- 07:54, 6 July 2020 (diff | hist) . . (+1,432) . . N 2020Strelak FlexAlign (Created page with "== Citation == Strelak, D.; Filipovic, J.; Jiménez-Moreno, A.; Carazo, J. M., Sorzano, C. O. S. FlexAlign: An Accurate and Fast Algorithm for Movie Alignment in Cryo-Electro...") (current)
- 07:52, 6 July 2020 (diff | hist) . . (+98) . . Main Page (→2D Preprocessing)
- 07:40, 6 July 2020 (diff | hist) . . (+1,596) . . N 2020Sanchez Cleaner (Created page with "== Citation == Sanchez-Garcia, R.; Segura, J.; Maluenda, D.; Sorzano, C. O. S., Carazo, J. M. MicrographCleaner: A python package for cryo-EM micrograph cleaning using deep...") (current)
- 07:37, 6 July 2020 (diff | hist) . . (+135) . . Main Page (→Automatic particle picking)
- 07:20, 6 July 2020 (diff | hist) . . (+1,802) . . N 2020Sazzed helices (Created page with "== Citation == Sazzed, S.; Scheible, P.; Alshammari, M.; Wriggers, W., He, J. Cylindrical Similarity Measurement for Helices in Medium-Resolution Cryo-Electron Microscopy Den...") (current)
- 07:17, 6 July 2020 (diff | hist) . . (+68) . . Main Page (→Validation)
- 06:58, 6 July 2020 (diff | hist) . . (+1,319) . . N 2020Bromberg Aberrations (Created page with "== Citation == Bromberg, R.; Guo, Y.; Borek, D., Otwinowski, Z. High-resolution cryo-EM reconstructions in the presence of substantial aberrations. IUCrJ, 202, 7, 445-452 =...") (current)
- 06:55, 6 July 2020 (diff | hist) . . (+90) . . Main Page (→Image formation)
- 18:49, 29 June 2020 (diff | hist) . . (+649) . . Nm User:Garygangren (Creating user page for new user.)
- 18:49, 29 June 2020 (diff | hist) . . (+305) . . Nm User talk:Garygangren (Welcome!) (current)
- 06:42, 24 June 2020 (diff | hist) . . (+1,282) . . N 2020Baxa Facility (Created page with "== Citation == Baxa, U.; Edwards, T. J.; Hutchison, M.; Wier, A. D.; Finney, J.; Wang, H. & Subramaniam, S. The National Cryo-EM Facility at Frederick National Laboratory...") (current)
- 06:40, 24 June 2020 (diff | hist) . . (+74) . . Main Page (→Automated data collection)
- 17:32, 10 June 2020 (diff | hist) . . (+1,360) . . N 2020Farkas MemBlob (Created page with "== Citation == Farkas, B.; Csizmadia, G.; Katona, E.; Tusnády, G. E. & Hegedűs, T. MemBlob database and server for identifying transmembrane regions using cryo-EM maps....") (current)
- 17:30, 10 June 2020 (diff | hist) . . (+95) . . Main Page (→Segmentation)
- 15:00, 4 June 2020 (diff | hist) . . (+2,032) . . N 2020Bendory Review (Created page with "== Citation == Bendory, Tamir and Bartesaghi, Alberto and Singer, Amit. Single-particle cryo-electron microscopy: Mathematical theory, computational challenges, and opportuni...") (current)
- 14:57, 4 June 2020 (diff | hist) . . (+76) . . Main Page (→Books and reviews)
- 14:21, 4 June 2020 (diff | hist) . . (+1,490) . . N 2020Zehni Joint (Created page with "== Citation == Zehni, M. and Donati, L. and Soubies, E. and Zhao, Z. and Unser, M. Joint angular refinement and reconstruction for single-particle Cryo-EM. IEEE Trans. Image...") (current)
- 14:20, 4 June 2020 (diff | hist) . . (0) . . Main Page (→3D Alignment)
- 14:19, 4 June 2020 (diff | hist) . . (+86) . . Main Page (→3D Alignment)
- 08:44, 4 June 2020 (diff | hist) . . (+1,492) . . N 2020Ho CryoID (Created page with "== Citation == Ho, C.-M.; Li, X.; Lai, M.; Terwilliger, T. C.; Beck, J. R.; Wohlschlegel, J.; Goldberg, D. E.; Fitzpatrick, A. W. P. & Zhou, Z. H. Bottom-up structural pr...") (current)
- 08:42, 4 June 2020 (diff | hist) . . (+107) . . Main Page (→Fitting and docking)
- 06:35, 28 May 2020 (diff | hist) . . (+72) . . Main Page (→Online courses and Learning material)
- 16:43, 18 March 2020 (diff | hist) . . (+116) . . Main Page (→Online courses and Learning material)
- 18:58, 11 March 2020 (diff | hist) . . (+1,135) . . N 2020Cianfrocco Wrong (Created page with "== Citation == Cianfrocco, M. A. & Kellogg, E. H. What Could Go Wrong? A Practical Guide to Single-Particle Cryo-EM: From Biochemistry to Atomic Models. Journal of chemical...") (current)
- 18:52, 11 March 2020 (diff | hist) . . (+62) . . Main Page (→Sample preparation)
- 21:26, 3 March 2020 (diff | hist) . . (+1,456) . . N 2020Song Tygress (Created page with "== Citation == Song, K.; Shang, Z.; Fu, X.; Lou, X.; Grigorieff, N. & Nicastro, D. In situ structure determination at nanometer resolution using TYGRESS. Nature methods, 202...") (current)
- 21:25, 3 March 2020 (diff | hist) . . (+104) . . Main Page (→3D reconstruction)
- 21:22, 3 March 2020 (diff | hist) . . (+1,806) . . N 1988Stewart Rec (Created page with "== Citation == Stewart, M. Computer image processing of electron micrographs of biological structures with helical symmetry. Journal of electron microscopy technique, 1988 ,...") (current)
- 21:19, 3 March 2020 (diff | hist) . . (+1,326) . . N 2010Egelman Pitfalls (Created page with "== Citation == Egelman, E. H. Reconstruction of helical filaments and tubes. Methods in enzymology, 2010 , 482 , 167-183 == Abstract == While Fourier-Bessel methods gave...") (current)
- 21:18, 3 March 2020 (diff | hist) . . (+163) . . Main Page (→Reconstruction)
- 12:52, 2 March 2020 (diff | hist) . . (+1,590) . . N 2020Joseph comparison (Created page with "== Citation == Joseph, A. P.; Lagerstedt, I.; Jakobi, A.; Burnley, T.; Patwardhan, A.; Topf, M. & Winn, M. Comparing Cryo-EM Reconstructions and Validating Atomic Model Fit U...") (current)
- 12:51, 2 March 2020 (diff | hist) . . (+84) . . Main Page (→Fitting and docking)
- 20:57, 24 February 2020 (diff | hist) . . (+2,172) . . N 2020Vilas Bfactor (Created page with "== Citation == Vilas, J. L.; Vargas, J.; Martinez, M.; Ramirez-Aportela, E.; Melero, R.; Jimenez-Moreno, A.; Garduño, E.; Conesa, P.; Marabini, R.; Maluenda, D.; Carazo, J....") (current)
- 20:57, 24 February 2020 (diff | hist) . . (+100) . . Main Page (→Sharpening of high resolution information)
- 20:52, 24 February 2020 (diff | hist) . . (+1,672) . . N 2020Stojkovic PTM (Created page with "== Citation == Stojković, V.; Myasnikov, A. G.; Young, I. D.; Frost, A.; Fraser, J. S. & Fujimori, D. G. Assessment of the nucleotide modifications in the high-resolution cr...") (current)
- 20:51, 24 February 2020 (diff | hist) . . (+86) . . Main Page (→Validation)
- 05:26, 21 February 2020 (diff | hist) . . (+1,750) . . N 2010Pintilie segger (Created page with "== Citation == Pintilie, G. D.; Zhang, J.; Goddard, T. D.; Chiu, W. & Gossard, D. C. Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space fi...") (current)
- 05:25, 21 February 2020 (diff | hist) . . (+76) . . Main Page (→Segmentation)
- 05:59, 14 February 2020 (diff | hist) . . (+991) . . N 2018Rupp Problems (Created page with "== Citation == Rupp, B. Against Method: Table 1-Cui Bono? Structure, 2018 , 26 , 919-923 == Abstract == The almost universally required "Table 1," summarizing data-collec...") (current)
- 05:58, 14 February 2020 (diff | hist) . . (+96) . . Main Page (→Resolution)
- 22:02, 14 January 2020 (diff | hist) . . (+1,413) . . N 2019Li Deep (Created page with "== Citation == Li, X.; Lin, Y.; Liu, Q.; McSweeney, S. & Yoo, S. Picking Particles in Cryo-EM Micrographs without Knowing the Particle Size 2019 New York Scientific Data Sum...") (current)
- 22:01, 14 January 2020 (diff | hist) . . (+90) . . Main Page (→Automatic particle picking)
- 21:52, 14 January 2020 (diff | hist) . . (+1,500) . . N 2019Wu BeamShiftAndTilt (Created page with "== Citation == Wu, C.; Huang, X.; Cheng, J.; Zhu, D. & Zhang, X. High-quality, high-throughput cryo-electron microscopy data collection via beam tilt and astigmatism-free bea...") (current)
- 21:51, 14 January 2020 (diff | hist) . . (+109) . . Main Page (→Collection geometry)
- 19:08, 7 January 2020 (diff | hist) . . (+1,525) . . N 2019Maluenda Scipion (Created page with "== Citation == Maluenda, D.; Majtner, T.; Horvath, P.; Vilas, J. L.; Jiménez-Moreno, A.; Mota, J.; Ramírez-Aportela, E.; Sánchez-García, R.; Conesa, P.; Del Caño, L.; Ra...") (current)
- 19:07, 7 January 2020 (diff | hist) . . (+87) . . Main Page (→Automated data collection)
- 19:00, 7 January 2020 (diff | hist) . . (+986) . . N 2020Vilas MonoDir (Created page with "== Citation == Vilas, J. L.; Tagare, H. D.; Vargas, J.; Carazo, J. M. & Sorzano, C. O. S. Measuring local-directional resolution and local anisotropy in cryo-EM maps. Nature...") (current)
- 18:59, 7 January 2020 (diff | hist) . . (+72) . . Main Page (→Resolution)
- 18:56, 7 January 2020 (diff | hist) . . (+2,191) . . N 2020Harastani NMA (Created page with "== Citation == Harastani, M.; Sorzano, C. O. S. & Jonić, S. Hybrid Electron Microscopy Normal Mode Analysis with Scipion. Protein science, 2020 , 29 , 223-236 == Abstract...") (current)
- 18:55, 7 January 2020 (diff | hist) . . (+105) . . Main Page (→3D Heterogeneity)
- 07:54, 27 December 2019 (diff | hist) . . (+1,371) . . N 2019Carrasco IP (Created page with "== Citation == Carrasco, M.; Toledo, P. & Tischler, N. D. Macromolecule Particle Picking and Segmentation of a KLH Database by Unsupervised Cryo-EM Image Processing. Biomole...") (current)
- 07:53, 27 December 2019 (diff | hist) . . (+91) . . Main Page (→Automatic particle picking)
- 07:45, 27 December 2019 (diff | hist) . . (+1,177) . . N 2019Benjin Review (Created page with "== Citation == Benjin, X. & Ling, L. Developments, applications, and prospects of cryo-electron microscopy. Protein science, 2019, 1-11 == Abstract == Cryo-electron micros...") (current)
- 07:43, 27 December 2019 (diff | hist) . . (+54) . . Main Page (→Books and reviews)
- 07:32, 27 December 2019 (diff | hist) . . (+2,030) . . N 2019Gomez Initial (Created page with "== Citation == Gomez-Blanco, J.; Kaur, S.; Ortega, J. & Vargas, J. A robust approach to ab initio cryo-electron microscopy initial volume determination. J. Structural Biolog...") (current)
- 07:30, 27 December 2019 (diff | hist) . . (+69) . . Main Page (→3D Reconstruction)
- 07:48, 30 November 2019 (diff | hist) . . (-4) . . 2016Murshudov Refinement (→Citation) (current)
- 07:48, 30 November 2019 (diff | hist) . . (+1,822) . . N 2016Murshudov Refinement (Created page with "== Citation == Murshudov, G. N. Refinement of atomic structures against cryo-EM maps Methods in enzymology, 2016, 579, 277-305 == Abstract == This review describes so...")
- 07:47, 30 November 2019 (diff | hist) . . (+108) . . Main Page (→Fitting and docking)
- 20:51, 9 November 2019 (diff | hist) . . (+611) . . N 2019Bepler Topaz (Created page with "== Citation == Bepler, T.; Morin, A.; Rapp, M.; Brasch, J.; Shapiro, L.; Noble, A. J. & Berger, B. TOPAZ: A Positive-Unlabeled Convolutional Neural Network CryoEM Particle Pi...") (current)
- 20:49, 9 November 2019 (diff | hist) . . (+74) . . Main Page (→Automatic particle picking)
- 21:03, 7 November 2019 (diff | hist) . . (+1,382) . . N 2019Ramirez DeepRes (Created page with "== Citation == Ramírez-Aportela, E.; Mota, J.; Conesa, P.; Carazo, J. M. & Sorzano, C. O. S. DeepRes: a new deep-learning- and aspect-based local resolution method for elect...") (current)
- 21:03, 7 November 2019 (diff | hist) . . (+83) . . Main Page (→Resolution)
- 20:56, 7 November 2019 (diff | hist) . . (+2,176) . . N 2019Han Constrained (Created page with "== Citation == Han, R.; Li, L.; Yang, P.; Zhang, F. & Gao, X. A novel constrained reconstruction model towards high-resolution sub-tomogram averaging. Bioinformatics (Oxford...") (current)
- 20:55, 7 November 2019 (diff | hist) . . (+89) . . Main Page (→Subtomogram analysis)
- 20:48, 7 November 2019 (diff | hist) . . (+1,071) . . N 2019Goetschius Asymmetric (Created page with "== Citation == Goetschius, D. J.; Lee, H. & Hafenstein, S. CryoEM reconstruction approaches to resolve asymmetric features. Advances in virus research, 2019 , 105 , 73-91...") (current)
- 20:47, 7 November 2019 (diff | hist) . . (+104) . . Main Page (→Reconstruction)
- 20:39, 7 November 2019 (diff | hist) . . (+983) . . N 2019Fokine Enhancement (Created page with "== Citation == Fokine, A.; Khare, B.; Sun, Y. & Rossmann, M. G. Enhancement of tomogram interpretability using the locked self-rotation function. Journal of structural biolo...") (current)
- 20:39, 7 November 2019 (diff | hist) . . (+100) . . Main Page (→Subtomogram analysis)
- 20:34, 7 November 2019 (diff | hist) . . (+1,154) . . N 2019Danev Review (Created page with "== Citation == Danev, R.; Yanagisawa, H. & Kikkawa, M. Cryo-Electron Microscopy Methodology: Current Aspects and Future Directions. Trends in biochemical sciences, 2019 , 44...") (current)
- 20:33, 7 November 2019 (diff | hist) . . (+66) . . Main Page (→Books and reviews)
- 20:15, 7 November 2019 (diff | hist) . . (+1,902) . . N 2019Ohashi SoftBody (Created page with "== Citation == Ohashi, M.; Maeda, S.-i. & Sato, C. Bayesian inference for three-dimensional helical reconstruction using a soft-body model Physical Review E, APS, 2019 , 100...") (current)
- 20:14, 7 November 2019 (diff | hist) . . (+98) . . Main Page (→Filament corrections)
- 19:57, 7 November 2019 (diff | hist) . . (+395) . . N 2019Klaholz Review (Created page with "== Citation == Klaholz, B. P. Deriving and refining atomic models in crystallography and cryo-EM: the latest Phenix tools to facilitate structure analysis. Acta crystallogra...") (current)
- 19:56, 7 November 2019 (diff | hist) . . (+76) . . Main Page (→Fitting and docking)
- 14:45, 22 October 2019 (diff | hist) . . (+879) . . N 1978Carrascosa matching (Created page with "== Citation == Carrascosa, J. & Steven, A. A procedure for evaluation of significant structural differences between related arrays of protein molecules Micron (1969), Elsevi...") (current)
- 14:42, 22 October 2019 (diff | hist) . . (+92) . . Main Page (→2D Preprocessing)
- 09:58, 21 October 2019 (diff | hist) . . (+1,316) . . N 2019Tegunov Warp (Created page with "== Citation == Tegunov, D. & Cramer, P. Real-time cryo-electron microscopy data preprocessing with Warp. Nature methods, 2019 == Abstract == The acquisition of cryo-elec...") (current)
- 09:57, 21 October 2019 (diff | hist) . . (+80) . . Main Page (→Automated data collection)
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