User contributions
From 3DEM-Methods
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- 18:16, 9 April 2021 (diff | hist) . . (+115) . . Main Page (→Automated data collection)
- 18:11, 9 April 2021 (diff | hist) . . (+1,584) . . N 2020Verbeke Separation (Created page with "== Citation == Verbeke, E. J.; Zhou, Y.; Horton, A. P.; Mallam, A. L.; Taylor, D. W. & Marcotte, E. M. Separating distinct structures of multiple macromolecular assemblie...") (current)
- 18:10, 9 April 2021 (diff | hist) . . (+94) . . Main Page (→3D Heterogeneity)
- 10:30, 8 April 2021 (diff | hist) . . (+1,932) . . N 2021Jimenez DeepAlign (Created page with "== Citation == Jiménez-Moreno, A.; Střelák, D.; Filipovič, J.; Carazo, J. M. & Sorzano, C. O. S. DeepAlign, a 3D Alignment Method based on Regio...") (current)
- 10:19, 8 April 2021 (diff | hist) . . (+81) . . Main Page (→3D Alignment)
- 10:37, 5 April 2021 (diff | hist) . . (-1) . . 2020Sharon NonUniformKam (→Links) (current)
- 10:35, 5 April 2021 (diff | hist) . . (+1) . . Main Page (→3D Alignment)
- 10:34, 5 April 2021 (diff | hist) . . (0) . . m 2020Sharon NonUniformKam (WikiSysop moved page 2020Singer NonUniformKam to 2020Sharon NonUniformKam: The index is constructed using the first author)
- 10:34, 5 April 2021 (diff | hist) . . (+38) . . N 2020Singer NonUniformKam (WikiSysop moved page 2020Singer NonUniformKam to 2020Sharon NonUniformKam: The index is constructed using the first author) (current)
- 08:07, 5 April 2021 (diff | hist) . . (+1,458) . . N 2021Tegunov M (Created page with "== Citation == Tegunov, D.; Xue, L.; Dienemann, C.; Cramer, P. & Mahamid, J. Multi-particle cryo-EM refinement with M visualizes ribosome-antibiotic complex at 3.5 Å...") (current)
- 08:05, 5 April 2021 (diff | hist) . . (+20) . . Main Page (→Subtomogram analysis)
- 08:05, 5 April 2021 (diff | hist) . . (+76) . . Main Page (→Subtomogram analysis)
- 07:38, 5 April 2021 (diff | hist) . . (+1,620) . . N 2020Hu Quaternions (Created page with "== Citation == Hu, M.; Zhang, Q.; Yang, J. & Li, X. Unit quaternion description of spatial rotations in 3D electron cryo-microscopy. J. Structural Biology, 2020, 212, 107...") (current)
- 07:33, 5 April 2021 (diff | hist) . . (+95) . . Main Page (→Books and reviews)
- 11:18, 24 March 2021 (diff | hist) . . (+1) . . Main Page (→3D Reconstruction)
- 19:22, 4 March 2021 (diff | hist) . . (0) . . Main Page (→Sharpening of high resolution information)
- 19:21, 4 March 2021 (diff | hist) . . (0) . . m 2020Ramirez LocalDeblur (WikiSysop moved page 2019Ramirez LocalDeblur to 2020Ramirez LocalDeblur) (current)
- 19:21, 4 March 2021 (diff | hist) . . (+37) . . N 2019Ramirez LocalDeblur (WikiSysop moved page 2019Ramirez LocalDeblur to 2020Ramirez LocalDeblur) (current)
- 19:21, 4 March 2021 (diff | hist) . . (+2,139) . . N 2020Ramirez LocalDeblur (Created page with "== Citation == Ram\irez-Aportela, E.; Vilas, J. L.; Glukhova, A.; Melero, R.; Conesa, P.; Mart\inez, M.; Maluenda, D.; Mota, J.; Jiménez, A.; Vargas, J.; Marabini, R.; Sexto...")
- 19:20, 4 March 2021 (diff | hist) . . (+80) . . Main Page (→Sharpening of high resolution information)
- 11:43, 4 March 2021 (diff | hist) . . (-26) . . 2020Leelananda Constraints (current)
- 10:58, 4 March 2021 (diff | hist) . . (+262) . . 2014AlNasr Secondary (current)
- 07:44, 4 March 2021 (diff | hist) . . (0) . . 2020Beckers Permutation (current)
- 07:39, 4 March 2021 (diff | hist) . . (+5) . . Main Page (→Resolution)
- 19:32, 3 March 2021 (diff | hist) . . (+5) . . Main Page (→3D Heterogeneity)
- 14:25, 3 March 2021 (diff | hist) . . (+1,104) . . N 2014Schwander manifold (Created page with "== Citation == Schwander, P.; Fung, R.; Ourmazd, A. Conformations of macromolecules and their complexes from heterogeneous datasets. Philosophical Transactions of the Royal S...") (current)
- 14:24, 3 March 2021 (diff | hist) . . (+96) . . Main Page (→3D Heterogeneity)
- 14:15, 3 March 2021 (diff | hist) . . (+1,447) . . N 2021Kaur LocSpiral (Created page with "== Citation == Kaur, S.; Gomez-Blanco, J.; Khalifa, A. A.; Adinarayanan, S.; Sanchez-Garcia, R.; Wrapp, D.; McLellan, J. S.; Bui, K. H.; Vargas, J. Local computational method...") (current)
- 14:14, 3 March 2021 (diff | hist) . . (+75) . . Main Page (→Sharpening of high resolution information)
- 14:08, 3 March 2021 (diff | hist) . . (+1,191) . . N 2017Rickgauer Detection (Created page with "== Citation == Rickgauer, J. P.; Grigorieff, N.; Denk, W. Single-protein detection in crowded molecular environments in cryo-EM images. eLife, 2017, 6 == Abstract == We pre...") (current)
- 14:07, 3 March 2021 (diff | hist) . . (+68) . . Main Page (→Automatic particle picking)
- 16:01, 2 March 2021 (diff | hist) . . (+1,684) . . N 2021Wieferig Devitrification (Created page with "== Citation == Wieferig, J.-P.; Mills, D. J. & Kühlbrandt, W. Devitrification reduces beam-induced movement in cryo-EM. IUCrJ, 2021, 8 == Abstract == As cryo-EM ap...") (current)
- 16:00, 2 March 2021 (diff | hist) . . (+107) . . Main Page (→Image formation)
- 15:45, 2 March 2021 (diff | hist) . . (+1,514) . . N 2021Lawson Challenge (Created page with "== Citation == Lawson, C. L.; Kryshtafovych, A.; Adams, P. D.; Afonine, P. V.; Baker, M. L.; Barad, B. A.; Bond, P.; Burnley, T.; Cao, R.; Cheng, J. and others. Cryo-EM model...") (current)
- 15:44, 2 March 2021 (diff | hist) . . (+124) . . Main Page (→Fitting and docking)
- 14:33, 1 March 2021 (diff | hist) . . (-1) . . 2021Zhong CryoDRGN (current)
- 14:33, 1 March 2021 (diff | hist) . . (+1,504) . . N 2021Zhong CryoDRGN (Created page with "== Citation == Zhong, E. D.; Bepler, T.; Berger, B.; Davis, J. H. CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks. Nature methods, 2021, 1...")
- 14:29, 1 March 2021 (diff | hist) . . (+99) . . Main Page (→3D Heterogeneity)
- 20:29, 23 February 2021 (diff | hist) . . (+20) . . Main Page (→3D Heterogeneity)
- 20:28, 23 February 2021 (diff | hist) . . (0) . . m 2021Matsumoto DEFmap (WikiSysop moved page 2020Matsumoto DEFmap to 2021Matsumoto DEFmap) (current)
- 20:28, 23 February 2021 (diff | hist) . . (+34) . . N 2020Matsumoto DEFmap (WikiSysop moved page 2020Matsumoto DEFmap to 2021Matsumoto DEFmap) (current)
- 20:28, 23 February 2021 (diff | hist) . . (+1,474) . . N 2021Matsumoto DEFmap (Created page with "== Citation == Matsumoto, S.; Ishida, S.; Araki, M.; Kato, T.; Terayama, K. & Okuno, Y. Extraction of protein dynamics information from cryo-EM maps using deep learning. Nat...")
- 20:23, 23 February 2021 (diff | hist) . . (+101) . . Main Page (→3D Heterogeneity)
- 07:36, 19 February 2021 (diff | hist) . . (+1,587) . . N 2020Fassler Printing (Created page with "== Citation == Fassler, F.; Zens, B.; Hauschild, R.; Schur, F. K. 3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy....") (current)
- 07:35, 19 February 2021 (diff | hist) . . (+77) . . Main Page (→Sample preparation)
- 07:43, 12 February 2021 (diff | hist) . . (+1,354) . . N 2020Yoder TimeResolved (Created page with "== Citation == Yoder, N.; Jalali-Yazdi, F.; Noreng, S.; Houser, A.; Baconguis, I.; Gouaux, E. Light-coupled cryo-plunger for time-resolved cryo-EM. Journal of structural biol...") (current)
- 07:39, 12 February 2021 (diff | hist) . . (+86) . . Main Page (→Sample preparation)
- 15:44, 9 February 2021 (diff | hist) . . (+96) . . Main Page (→Online courses and Learning material)
- 07:05, 9 February 2021 (diff | hist) . . (+1,920) . . N 2020Salfer PyCurv (Created page with "== Citation == Salfer, M.; Collado, J. F.; Baumeister, W.; Fernández-Busnadiego, R.; Martínez-Sánchez, A. Reliable estimation of membrane curvature for cryo-electron tomog...") (current)
- 07:03, 9 February 2021 (diff | hist) . . (+1) . . Main Page (→Segmentation)
- 07:02, 9 February 2021 (diff | hist) . . (+80) . . Main Page (→Segmentation)
- 07:58, 5 February 2021 (diff | hist) . . (+1,487) . . N 2021Sorzano Uneven (Created page with "== Citation == Sorzano, C.; Semchonok, D.; Lin, S.; Lo, Y.; Vilas, J.; Jiménez-Moreno, A.; Gragera, M.; Vacca, S.; Maluenda, D.; Mart\inez, M.; Ramírez-Aportela, E.;...") (current)
- 07:46, 5 February 2021 (diff | hist) . . (+95) . . Main Page (→3D Reconstruction)
- 08:44, 3 February 2021 (diff | hist) . . (+1,542) . . N 2020Heimowitz Aspire (Created page with "== Citation == Heimowitz, A.; Andén, J.; Singer, A. Reducing bias and variance for CTF estimation in single particle cryo-EM. Ultramicroscopy, 2020, 212, 112950 == Abstrac...") (current)
- 08:43, 3 February 2021 (diff | hist) . . (+70) . . Main Page (→CTF estimation and restoration)
- 08:32, 3 February 2021 (diff | hist) . . (+1,282) . . N 2020Pan TV (Created page with "== Citation == Pan, H.; Wen, Y.-W.; Zeng, T. Constrained Total Variation Based Three-Dimension Single Particle Reconstruction in Cryogenic Electron Microscopy. Journal of Sci...") (current)
- 08:31, 3 February 2021 (diff | hist) . . (+86) . . Main Page (→3D Reconstruction)
- 08:25, 3 February 2021 (diff | hist) . . (-2) . . 2020Lai Statistics (current)
- 08:24, 3 February 2021 (diff | hist) . . (+1,215) . . N 2020Lai Statistics (Created page with "== Citation == Lai, T. L.; Wang, S.-H.; Yao, Y.-C.; Chung, S.-C.; Chang, W.-H.; Tu, I.-P. Cryo-EM: breakthroughs in chemistry, structural biology, and statistical underpinnin...")
- 08:22, 3 February 2021 (diff | hist) . . (+97) . . Main Page (→Books and reviews)
- 08:03, 2 February 2021 (diff | hist) . . (+1,402) . . N 2021Luo Opus (Created page with "== Citation == Luo, Z.; Campos-Acevedo, A. A.; Lv, L.; Wang, Q.; Ma, J. Sparseness and Smoothness Regularized Imaging for improving the resolution of Cryo-EM single-particle...") (current)
- 08:00, 2 February 2021 (diff | hist) . . (+92) . . Main Page (→3D Reconstruction)
- 09:37, 28 January 2021 (diff | hist) . . (+2,160) . . N 2020Seffernick Hybrid (Created page with "== Citation == Seffernick, J. T.; Lindert, S. Hybrid methods for combined experimental and computational determination of protein structure. The Journal of chemical physics,...") (current)
- 09:33, 28 January 2021 (diff | hist) . . (+126) . . Main Page (→Books and reviews)
- 07:43, 28 January 2021 (diff | hist) . . (+1,904) . . N 2020Yip Atomic (Created page with "== Citation == Yip, K. M.; Fischer, N.; Paknia, E.; Chari, A.; Stark, H. Atomic-resolution protein structure determination by cryo-EM. Nature, 2020, 587, 157-161 == Abstrac...") (current)
- 07:40, 28 January 2021 (diff | hist) . . (+126) . . Main Page (→Image formation)
- 08:22, 27 January 2021 (diff | hist) . . (+2,772) . . N 2020Alazzawi Auto (Created page with "== Citation == Al-Azzawi, A.; Ouadou, A.; Duan, Y.; Cheng, J. Auto3DCryoMap: an automated particle alignment approach for 3D cryo-EM density map reconstruction. BMC bioinform...") (current)
- 08:19, 27 January 2021 (diff | hist) . . (+110) . . Main Page (→3D Reconstruction)
- 07:11, 25 January 2021 (diff | hist) . . (+846) . . N 2020Cragnolini Tempy2 (Created page with "== Citation == Cragnolini, T.; Sahota, H.; Joseph, A. P.; Sweeney, A.; Malhotra, S.; Vasishtan, D.; Topf, M. TEMPy2: a Python library with improved 3D electron microscopy den...") (current)
- 06:59, 25 January 2021 (diff | hist) . . (+93) . . Main Page (→Fitting and docking)
- 16:31, 15 January 2021 (diff | hist) . . (+1,643) . . N 2021Kimanius PriorKnowledge (Created page with "== Citation == Kimanius, D.; Zickert, G.; Nakane, T.; Adler, J.; Lunz, S.; Schonlieb, C.-B.; Oktem, O.; Scheres, S. Exploiting prior knowledge about biological macromolecules...") (current)
- 16:30, 15 January 2021 (diff | hist) . . (+107) . . Main Page (→3D Reconstruction)
- 16:17, 15 January 2021 (diff | hist) . . (+1,831) . . N 2020Liebschner Ceres (Created page with "== Citation == Liebschner, D.; Afonine, P. V.; Moriarty, N. W.; Poon, B. K.; Chen, V. B.; Adams, P. D. CERES: a cryo-EM re-refinement system for continuous improvement of dep...") (current)
- 16:15, 15 January 2021 (diff | hist) . . (+118) . . Main Page (→Fitting and docking)
- 15:06, 13 January 2021 (diff | hist) . . (+374) . . N 2020Basanta workflow (Created page with "== Citation == Basanta, B.; Chowdhury, S.; Lander, G. C.; Grotjahn, D. A. A guided approach for subtomogram averaging of challenging macromolecular assemblies. Journal of str...") (current)
- 14:53, 13 January 2021 (diff | hist) . . (+77) . . Main Page (→Resolution)
- 14:53, 13 January 2021 (diff | hist) . . (-1) . . Main Page (→Subtomogram analysis)
- 14:32, 13 January 2021 (diff | hist) . . (+1,578) . . N 2020Vilas Monotomo (Created page with "== Citation == Vilas, J.; Oton, J.; Messaoudi, C.; Melero, R.; Conesa, P.; Ramirez-Aportela, E.; Mota, J.; Martinez, M.; Jimenez, A.; Marabini, R.; J.M. Carazo; J. Vargas; C....") (current)
- 14:27, 13 January 2021 (diff | hist) . . (+77) . . Main Page (→Subtomogram analysis)
- 14:23, 13 January 2021 (diff | hist) . . (+1,268) . . N 2019Subramaniya DeepSSE (Created page with "== Citation == Subramaniya, R.; Terashi, G.; Kihara, D. Protein secondary structure detection in intermediate-resolution cryo-EM maps using deep learning. Nature methods, 201...") (current)
- 14:21, 13 January 2021 (diff | hist) . . (+106) . . Main Page (→Fitting and docking)
- 14:01, 13 January 2021 (diff | hist) . . (-46) . . 2020Huang SuperResolution (→Abstract) (current)
- 13:58, 13 January 2021 (diff | hist) . . (+1,764) . . N 2020Huang SuperResolution (Created page with "== Citation == Huang, Q.; Zhou, Y.; Du, X.; Chen, R.; Wang, J.; Rudin, C.; Bartesaghi, A. Cryo-ZSSR: multiple-image super-resolution basedon deep internal learning. Proc. 34t...")
- 13:57, 13 January 2021 (diff | hist) . . (+104) . . Main Page (→2D Preprocessing)
- 11:55, 13 January 2021 (diff | hist) . . (+1,339) . . N 2021Saltzberg IMP (Created page with "== Citation == Saltzberg, D. J.; Viswanath, S.; Echeverria, I.; Chemmama, I. E.; Webb, B.; Sali, A. Using Integrative Modeling Platform to compute, validate, and archive a mo...") (current)
- 11:54, 13 January 2021 (diff | hist) . . (+101) . . Main Page (→Fitting and docking)
- 13:00, 11 January 2021 (diff | hist) . . (+1,584) . . 2020Palovcak noise2noise (current)
- 12:59, 11 January 2021 (diff | hist) . . (+124) . . N 2020Palovcak noise2noise (Created page with "== Citation == == Abstract == == Keywords == == Links == == Related software == == Related methods == == Comments ==")
- 12:58, 11 January 2021 (diff | hist) . . (+83) . . Main Page (→2D Preprocessing)
- 12:33, 11 January 2021 (diff | hist) . . (+2,339) . . N 2020Xie Network (Created page with "== Citation == Xie, R.; Chen, Y.-X.; Cai, J.-M.; Yang, Y.; Shen, H.-B. SPREAD: A Fully Automated Toolkit for Single-Particle Cryogenic Electron Microscopy Data 3D Reconstruct...") (current)
- 12:32, 11 January 2021 (diff | hist) . . (+93) . . Main Page (→3D Alignment)
- 10:40, 8 January 2021 (diff | hist) . . (+1,788) . . N 2019Rubinstein ultrasonic (Created page with "== Citation == Rubinstein, J. L.; Guo, H.; Ripstein, Z. A.; Haydaroglu, A.; Au, A.; Yip, C. M.; Di Trani, J. M.; Benlekbir, S.; Kwok, T. Shake-it-off: a simple ultrasonic cry...") (current)
- 10:39, 8 January 2021 (diff | hist) . . (+85) . . Main Page (→Sample preparation)
- 10:30, 8 January 2021 (diff | hist) . . (+1,186) . . N 2020Naydenova Buckling (Created page with "== Citation == Naydenova, K.; Jia, P.; Russo, C. J. Cryo-EM with sub-1 Å specimen movement. Science, 2020, 370, 223-226 == Abstract == Most information loss in cryogenic...") (current)
- 10:29, 8 January 2021 (diff | hist) . . (+92) . . Main Page (→Image formation)
- 10:08, 8 January 2021 (diff | hist) . . (+1,712) . . N 2020Terwilliger density (Created page with "== Citation == Terwilliger, T. C.; Sobolev, O. V.; Afonine, P. V.; Adams, P. D.; Read, R. J. Density modification of cryo-EM maps. Acta crystallographica. Section D, Structur...") (current)
- 10:06, 8 January 2021 (diff | hist) . . (+81) . . Main Page (→Sharpening of high resolution information)
- 09:46, 8 January 2021 (diff | hist) . . (+1,943) . . N 2020Caesar Simple3 (Created page with "== Citation == Caesar, J.; Reboul, C. F.; Machello, C.; Kiesewetter, S.; Tang, M. L.; Deme, J. C.; Johnson, S.; Elmlund, D.; Lea, S. M.; Elmlund, H. SIMPLE 3.0. Stream single...") (current)
- 09:45, 8 January 2021 (diff | hist) . . (+49) . . Main Page (→Software)
- 09:23, 8 January 2021 (diff | hist) . . (+1,407) . . N 2020Moebel MCMC (Created page with "== Citation == Moebel, E., Kervrann, C. A Monte Carlo framework for missing wedge restoration and noise removal in cryo-electron tomography. Journal of Structural Biology: X,...") (current)
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