User contributions
From 3DEM-Methods
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- 11:23, 8 November 2021 (diff | hist) . . (+1,419) . . N 2021He EMNUSS (Created page with "== Citation == He, J. & Huang, S.-Y. EMNUSS: a deep learning framework for secondary structure annotation in cryo-EM maps. Briefings in bioinformatics, 2021, bbab156 ==...") (current)
- 11:22, 8 November 2021 (diff | hist) . . (+115) . . Main Page (→Segmentation)
- 10:57, 8 November 2021 (diff | hist) . . (+1,566) . . N 2021Chen Fast (Created page with "== Citation == Chen, Y.-X.; Xie, R.; Yang, Y.; He, L.; Feng, D. & Shen, H.-B. Fast Cryo-EM Image Alignment Algorithm Using Power Spectrum Features. J. Chemical Informatio...") (current)
- 10:56, 8 November 2021 (diff | hist) . . (+73) . . Main Page (→2D Alignment)
- 10:27, 8 November 2021 (diff | hist) . . (+5) . . Main Page (→2D Preprocessing)
- 09:54, 8 November 2021 (diff | hist) . . (+1,031) . . N 2021Rao Wasserstein (Created page with "== Citation == Rao, R.; Moscovich, A. & Singer, A. Wasserstein K-Means for Clustering Tomographic Projections. Proc. Machine Learning for Structural Biology Workshop, 202...") (current)
- 09:53, 8 November 2021 (diff | hist) . . (+105) . . Main Page (→2D Classification and clustering)
- 09:52, 8 November 2021 (diff | hist) . . (-100) . . Main Page (→2D Alignment)
- 09:52, 8 November 2021 (diff | hist) . . (+99) . . Main Page (→2D Alignment)
- 09:45, 8 November 2021 (diff | hist) . . (+1,801) . . N 2021Chung CryoRALIB (Created page with "== Citation == Chung, S.-C.; Hung, C.-Y.; Siao, H.-L.; Wu, H.-Y.; Chang, W.-H. & Tu, I.-P. Cryo-Ralib-A Modular Library for Accelerating Alignment in CRYO-EM. 2021 IEEE I...") (current)
- 09:44, 8 November 2021 (diff | hist) . . (+76) . . Main Page (→2D Alignment)
- 09:36, 8 November 2021 (diff | hist) . . (+2,613) . . N 2021Du Active (Created page with "== Citation == Du, X.; Wang, H.; Zhu, Z.; Zeng, X.; Chang, Y.-W.; Zhang, J.; Xing, E. & Xu, M. Active learning to classify macromolecular structures in situ for less supe...") (current)
- 09:35, 8 November 2021 (diff | hist) . . (+90) . . Main Page (→Subtomogram analysis)
- 09:05, 8 November 2021 (diff | hist) . . (+1,416) . . N 2021Heimowitz Centering (Created page with "== Citation == Heimowitz, A.; Sharon, N. & Singer, A. Centering noisy images with application to cryo-EM. SIAM J. Imaging Sciences, 2021, 14, 689-716 == Abstract == We...") (current)
- 09:04, 8 November 2021 (diff | hist) . . (+68) . . Main Page (→2D Alignment)
- 08:35, 8 November 2021 (diff | hist) . . (+1,740) . . N 2020Chung 2SDR (Created page with "== Citation == Chung, S.-C.; Wang, S.-H.; Niu, P.-Y.; Huang, S.-Y.; Chang, W.-H.; Tu, I. Two-stage dimension reduction for noisy high-dimensional images and application to Cr...") (current)
- 08:31, 8 November 2021 (diff | hist) . . (+61) . . Main Page (→2D Preprocessing)
- 09:06, 22 October 2021 (diff | hist) . . (+927) . . N 2021Maji BlackBox (Created page with "== Citation == Maji, S. & Frank, J. What’s in the Black Box?--A Perspective on Software in Cryo-Electron Microscopy. Biophysical J., 2021, 120, 4307-4311 == Abstract...") (current)
- 09:05, 22 October 2021 (diff | hist) . . (+80) . . Main Page (→Software)
- 07:57, 22 October 2021 (diff | hist) . . (+2,385) . . N 2021Wypych gP2S (Created page with "== Citation == Wypych, D.; Kierecki, D.; Golebiowski, F. M. & Rohou, A. gP2S, an Information Management System for CryoEM Experiments. J. visualized experiments: JoVE, 20...") (current)
- 07:53, 22 October 2021 (diff | hist) . . (+65) . . Main Page (→Automated data collection)
- 07:44, 22 October 2021 (diff | hist) . . (+2,058) . . N 2021Herreros Zernikes3D (Created page with "== Citation == Herreros, D.; Lederman, R. R.; Krieger, J.; Jiménez-Moreno, A.; Mart\inez, M.; Myška, D.; Strelak, D.; Filipovic, J.; Bahar, I.; Carazo, J. &...") (current)
- 07:40, 22 October 2021 (diff | hist) . . (+100) . . Main Page (→3D Heterogeneity)
- 07:29, 22 October 2021 (diff | hist) . . (+1,829) . . N 2021Zhong CryoDRGN2 (Created page with "== Citation == Zhong, E. D.; Lerer, A.; Davis, J. H. & Berger, B. CryoDRGN2: Ab Initio Neural Reconstruction of 3D Protein Structures From Real Cryo-EM Images. Proc. IEEE...") (current)
- 07:24, 22 October 2021 (diff | hist) . . (+112) . . Main Page (→3D Alignment)
- 07:11, 22 October 2021 (diff | hist) . . (+1,314) . . N 2021Nashed CryoPoseNet (Created page with "== Citation == Nashed, Y. S.; Poitevin, F.; Gupta, H.; Woollard, G.; Kagan, M.; Yoon, C. H. & Ratner, D. CryoPoseNet: End-to-End Simultaneous Learning of Single-Particle...") (current)
- 07:10, 22 October 2021 (diff | hist) . . (+81) . . Main Page (→3D Alignment)
- 06:55, 22 October 2021 (diff | hist) . . (+1,040) . . N 2021Zhang Pegylation (Created page with "== Citation == Zhang, Z.; Shigematsu, H.; Shimizu, T. & Ohto, U. Improving particle quality in cryo-EM analysis using a PEGylation method. Structure, 2021, 29, 1192-1199....") (current)
- 06:54, 22 October 2021 (diff | hist) . . (+93) . . Main Page (→Sample preparation)
- 08:59, 5 October 2021 (diff | hist) . . (+1,482) . . N 2021Sanchez DeepEMhancer (Created page with "== Citation == Sanchez-Garcia, R.; Gomez-Blanco, J.; Cuervo, A.; Carazo, J. M.; Sorzano, C. O. S. & Vargas, J. DeepEMhancer: a deep learning solution for cryo-EM volume p...") (current)
- 08:58, 5 October 2021 (diff | hist) . . (+93) . . Main Page (→Sharpening of high resolution information)
- 08:49, 5 October 2021 (diff | hist) . . (+1,781) . . N 2021Sorzano Scipion (Created page with "== Citation == Sorzano, C. O. S.; Jiménez-Moreno, A.; Maluenda, D.; Ram\irez-Aportela, E.; Mart\inez, M.; Cuervo, A.; Melero, R.; Conesa, J. J.; Sánchez-Garc\ia, R.; Strela...") (current)
- 08:48, 5 October 2021 (diff | hist) . . (+108) . . Main Page (→Software)
- 09:50, 20 September 2021 (diff | hist) . . (+1,027) . . N 2021Yonekura Hole (Created page with "== Citation == Yonekura, K.; Maki-Yonekura, S.; Naitow, H.; Hamaguchi, T. & Takaba, K. Machine learning-based real-time object locator/evaluator for cryo-EM data collecti...") (current)
- 09:48, 20 September 2021 (diff | hist) . . (+75) . . Main Page (→Automated data collection)
- 09:40, 20 September 2021 (diff | hist) . . (+2,002) . . N 2021Engstrom Nitrogen (Created page with "== Citation == Engstrom, T.; Clinger, J. A.; Spoth, K. A.; Clarke, O. B.; Closs, D. S.; Jayne, R.; Apker, B. & Thorne, R. High-resolution single-particle cryo-EM of sampl...") (current)
- 09:39, 20 September 2021 (diff | hist) . . (+81) . . Main Page (→Sample preparation)
- 09:09, 20 September 2021 (diff | hist) . . (+1,843) . . N 2021Scaramuzza Dynamo (Created page with "== Citation == Scaramuzza, S. & Castaño-Díez, D. Step-by-step guide to efficient subtomogram averaging of virus-like particles with Dynamo. PLoS biology, 2021, 19, e300...") (current)
- 08:55, 20 September 2021 (diff | hist) . . (+86) . . Main Page (→Subtomogram analysis)
- 08:27, 20 September 2021 (diff | hist) . . (+1,392) . . N 2021Burt RWD (Created page with "== Citation == Burt, A.; Gaifas, L.; Dendooven, T. & Gutsche, I. A flexible framework for multi-particle refinement in cryo-electron tomography. PLoS biology, 2021, 19, e...") (current)
- 08:26, 20 September 2021 (diff | hist) . . (+86) . . Main Page (→Software)
- 06:10, 20 September 2021 (diff | hist) . . (+1,416) . . N 2021Pintilie Validation (Created page with "== Citation == Pintilie, G. & Chiu, W. Validation, analysis and annotation of cryo-EM structures. Acta crystallographica. Section D, Structural biology, 2021, 77, 1142-11...") (current)
- 06:08, 20 September 2021 (diff | hist) . . (+81) . . Main Page (→Validation)
- 05:50, 20 September 2021 (diff | hist) . . (+5) . . Main Page (→Subtomogram analysis)
- 05:49, 20 September 2021 (diff | hist) . . (+1,720) . . N 2021Zeng OpenSet (Created page with "== Citation == Zeng, Y.; Howe, G.; Yi, K.; Zeng, X.; Zhang, J.; Chang, Y.-W. & Xu, M. Unsupervised Domain Alignment Based Open Set Structural Recognition of Macromolecule...") (current)
- 05:48, 20 September 2021 (diff | hist) . . (+94) . . Main Page (→Subtomogram analysis)
- 09:53, 17 September 2021 (diff | hist) . . (+1,907) . . N 2021Fernandez Adjustment (Created page with "== Citation == Fernández-Giménez, E.; Mart\inez, M.; Sánchez-Garc\ia, R.; Marabini, R.; Ram\irez-Aportela, E.; Conesa, P.; Carazo, J. M. & Sorzano, C...") (current)
- 09:44, 17 September 2021 (diff | hist) . . (+103) . . Main Page (→Sharpening of high resolution information)
- 07:46, 17 September 2021 (diff | hist) . . (+2,228) . . N 2021Gupta CryoGAN (Created page with "== Citation == Gupta, H.; McCann, M. T.; Donati, L. & Unser, M. Cryogan: A new reconstruction paradigm for single-particle cryo-em via deep adversarial learning. IEEE Tra...") (current)
- 07:44, 17 September 2021 (diff | hist) . . (+93) . . Main Page (→3D Reconstruction)
- 06:49, 17 September 2021 (diff | hist) . . (+2,431) . . N 2021Geng Nudim (Created page with "== Citation == Geng, Z.; She, Z.; Zhou, Q.; Dong, Z.; Zhan, F.; Zhang, H.; Xu, J.; Gao, Z. & Dong, Y. NUDIM: A non-uniform fast Fourier transform based dual-space constra...") (current)
- 06:48, 17 September 2021 (diff | hist) . . (+108) . . Main Page (→3D reconstruction)
- 06:25, 17 September 2021 (diff | hist) . . (+1,263) . . N 2021Fan Denoising (Created page with "== Citation == Fan, Y. & Zhao, Z. Cryo-Electron Microscopy Image Denoising Using Multi-Frequency Vector Diffusion Maps. 2021 IEEE Intl. Conf. on Image Processing (ICIP),...") (current)
- 06:22, 17 September 2021 (diff | hist) . . (+86) . . Main Page (→2D Preprocessing)
- 08:43, 30 August 2021 (diff | hist) . . (+1,381) . . N 2021Jonaid Liquid (Created page with "== Citation == Jonaid, G. M.; Dearnaley, W. J.; Casasanta, M. A.; Kaylor, L.; Berry, S.; Dukes, M. J.; Spilman, M. S.; Gray, J. L. & Kelly, D. F. High-Resolution Imaging...") (current)
- 08:38, 30 August 2021 (diff | hist) . . (+54) . . Main Page (→Sample preparation)
- 10:52, 14 August 2021 (diff | hist) . . (-7) . . 2021Kazemi Enrich (→Abstract) (current)
- 10:51, 14 August 2021 (diff | hist) . . (+1,935) . . N 2021Kazemi Enrich (Created page with "== Citation == Kazemi, M.; Sorzano, C. O. S.; Carazo, J.; des Georges, A.; Abrishami, V. & Vargas, J. ENRICH: a fast method to improve the quality of flexible macromolecu...")
- 10:49, 14 August 2021 (diff | hist) . . (+127) . . Main Page (→3D Heterogeneity)
- 08:06, 6 August 2021 (diff | hist) . . (+1,617) . . N 2021Chen GM (Created page with "== Citation == Chen, M. & Ludtke, S. J. Deep learning-based mixed-dimensional Gaussian mixture model for characterizing variability in cryo-EM. Nature Methods, 2021, 18:...") (current)
- 08:03, 6 August 2021 (diff | hist) . . (+125) . . Main Page (→3D Heterogeneity)
- 07:40, 6 August 2021 (diff | hist) . . (+1,150) . . N 2021Mendez Graph (Created page with "== Citation == Méndez, J.; Garduño, E.; Carazo, J. M. & Sorzano, C. O. S. Identification of incorrectly oriented particles in Cryo-EM Single Particle Analys...") (current)
- 07:37, 6 August 2021 (diff | hist) . . (+87) . . Main Page (→Validation)
- 08:42, 21 July 2021 (diff | hist) . . (+1,513) . . N 2021Ki Conformational (Created page with "== Citation == Ki, H.; Jo, J.; Kim, Y.; Kim, T. W.; Kim, C.; Kim, Y.; Kim, C. W.; Muniyappan, S.; Lee, S. J.; Kim, Y. & others. Uncovering the Conformational Distribution...") (current)
- 08:40, 21 July 2021 (diff | hist) . . (+120) . . Main Page (→Sample preparation)
- 08:12, 21 July 2021 (diff | hist) . . (+1,197) . . N 2021Yang CRIM (Created page with "== Citation == Sheriff, J.; Fletcher, I. W. & Cumpson, P. J. Computer-readable Image Markers for Automated Registration in Correlative Microscopy - "autoCRIM". Ultramicro...") (current)
- 08:10, 21 July 2021 (diff | hist) . . (+101) . . Main Page (→Automated data collection)
- 13:05, 20 July 2021 (diff | hist) . . (+1,735) . . N 2021Ohashi GRIPS (Created page with "== Citation == Ohashi, M.; Hosokawa, F.; Shinkawa, T. & Iwasaki, K. Evaluation of automated particle picking for cryogenic electron microscopy using high-precision transm...") (current)
- 13:03, 20 July 2021 (diff | hist) . . (+66) . . Main Page (→Automatic particle picking)
- 06:56, 14 July 2021 (diff | hist) . . (+2,061) . . N 2021Giraldo cryoBIFE (Created page with "== Citation == Giraldo-Barreto, J.; Ortiz, S.; Thiede, E. H.; Palacio-Rodriguez, K.; Carpenter, B.; Barnett, A. H. & Cossio, P. A Bayesian approach to extracting free-ene...") (current)
- 06:55, 14 July 2021 (diff | hist) . . (+98) . . Main Page (→3D Heterogeneity)
- 06:46, 14 July 2021 (diff | hist) . . (+2,053) . . N 2021Mori Flexible (Created page with "== Citation == Mori, T.; Terashi, G.; Matsuoka, D.; Kihara, D. & Sugita, Y. Efficient Flexible Fitting Refinement with Automatic Error Fixing for De Novo Structure Modeli...") (current)
- 06:44, 14 July 2021 (diff | hist) . . (+105) . . Main Page (→Fitting and docking)
- 06:28, 14 July 2021 (diff | hist) . . (+1,104) . . N 2021Voss Melting (Created page with "== Citation == Voss, J. M.; Harder, O. F.; Olshin, P. K.; Drabbels, M. & Lorenz, U. J. Rapid Melting and Revitrification as an Approach to Microsecond Time-Resolved Cryo-...") (current)
- 06:13, 14 July 2021 (diff | hist) . . (+122) . . Main Page (→Sample preparation)
- 09:40, 16 June 2021 (diff | hist) . . (+1,046) . . N 2021Jagota GoldNanoparticles (Created page with "== Citation == Jagota, M.; Townshend, R. J. L.; Kang, L.-W.; Bushnell, D. A.; Dror, R. O.; Kornberg, R. D. & Azubel, M. Gold nanoparticles and tilt pairs to assess protei...") (current)
- 09:39, 16 June 2021 (diff | hist) . . (+90) . . Main Page (→Sample preparation)
- 09:20, 16 June 2021 (diff | hist) . . (+2,171) . . N 2021Kojima Preferred (Created page with "== Citation == Kojima, R. & Yoshidome, T. A measure for the identification of preferred particle orientations in cryo-electron microscopy data: A simulation study. Biophysics...") (current)
- 09:18, 16 June 2021 (diff | hist) . . (+83) . . Main Page (→3D Alignment)
- 09:08, 16 June 2021 (diff | hist) . . (+1,599) . . N 2021Casasanta Microchip (Created page with "== Citation == Casasanta, M. A.; Jonaid, G. M.; Kaylor, L.; Luqiu, W. Y.; Solares, M. J.; Schroen, M. L.; Dearnaley, W. J.; Wilson, J.; Dukes, M. J. & Kelly, D. F. Microc...") (current)
- 09:03, 16 June 2021 (diff | hist) . . (+4) . . Main Page (→Sample preparation)
- 09:02, 16 June 2021 (diff | hist) . . (+144) . . Main Page (→Sample preparation)
- 08:52, 16 June 2021 (diff | hist) . . (+1,786) . . N 2020Venkatakrishnan MBIR (Created page with "== Citation == Venkatakrishnan, S.; Juneja, P. & O’Neill, H. Model-based Reconstruction for Single Particle Cryo-Electron Microscopy. 2020 54th Asilomar Conference on S...") (current)
- 08:51, 16 June 2021 (diff | hist) . . (+84) . . Main Page (→3D Reconstruction)
- 08:42, 16 June 2021 (diff | hist) . . (+1,827) . . N 2021Jiang MoAu (Created page with "== Citation == Jiang, X.; Xuan, S.; Zuckermann, R. N.; Glaeser, R. M.; Downing, K. H. & Balsara, N. P. Minimizing Crinkling of Soft Specimens Using Holey Gold Films on Mo...") (current)
- 08:41, 16 June 2021 (diff | hist) . . (+72) . . Main Page (→Sample preparation)
- 08:32, 16 June 2021 (diff | hist) . . (+2,207) . . N 2021Singla Measures (Created page with "== Citation == Singla, J.; White, K. L.; Stevens, R. C. & Alber, F. Assessment of scoring functions to rank the quality of 3D subtomogram clusters from cryo-electron tomo...") (current)
- 08:31, 16 June 2021 (diff | hist) . . (+103) . . Main Page (→Subtomogram analysis)
- 08:11, 16 June 2021 (diff | hist) . . (+1,993) . . N 2021Yang CLEM (Created page with "== Citation == Yang, J. E.; Larson, M. R.; Sibert, B. S.; Shrum, S. & Wright, E. R. CorRelator: Interactive software for real-time high precision cryo-correlative light a...") (current)
- 08:09, 16 June 2021 (diff | hist) . . (+68) . . Main Page (→Automated data collection)
- 08:42, 11 June 2021 (diff | hist) . . (+674) . . N 2021Bai Review (Created page with "== Citation == Bai, X.-c. Seeing atoms by single-particle Cryo-EM. Trends in biochemical sciences, 2021, 46, 253-254 == Abstract == Nakane et al. and Yip et al., for the f...") (current)
- 08:40, 11 June 2021 (diff | hist) . . (+88) . . Main Page (→Books and reviews)
- 08:35, 11 June 2021 (diff | hist) . . (+2,268) . . N 2021Thurber Automated (Created page with "== Citation == Thurber, K. R.; Yin, Y. & Tycko, R. Automated picking of amyloid fibrils from cryo-EM images for helical reconstruction with RELION. Journal of structural...") (current)
- 08:33, 11 June 2021 (diff | hist) . . (+108) . . Main Page (→Helical particles)
- 08:28, 11 June 2021 (diff | hist) . . (+2,342) . . N 2021Han LocalConstraints (Created page with "== Citation == Han, R.; Li, G. & Gao, X. Robust and ultrafast fiducial marker correspondence in electron tomography by a two-stage algorithm considering local constraints...") (current)
- 08:27, 11 June 2021 (diff | hist) . . (+96) . . Main Page (→Image alignment)
- 08:20, 11 June 2021 (diff | hist) . . (+1,745) . . N 2020Mullick SuperResolution (Created page with "== Citation == Mullick, B.; Wang, Y.; Yadav, P. & Farimani, A. B. Learning Super-Resolution Electron Density Map of Proteins using 3D U-Net. Proc. Machine Learning for St...") (current)
- 08:17, 11 June 2021 (diff | hist) . . (+82) . . Main Page (→Sharpening of high resolution information)
- 10:36, 10 June 2021 (diff | hist) . . (+1,562) . . N 2019Kidmose Namdinator (Created page with "== Citation == Kidmose, R. T.; Juhl, J.; Nissen, P.; Boesen, T.; Karlsen, J. L. & Pedersen, B. P. Namdinator: automatic molecular dynamics flexible fitting of structural...") (current)
- 10:33, 10 June 2021 (diff | hist) . . (+84) . . Main Page (→Fitting and docking)
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