User contributions for CoSS

24 October 2013

• 10:5310:53, 24 October 2013 diff hist +1,601 N 2011Read Created page with "== Citation == Read, R. J.; Adams, P. D.; Arendall 3rd, W. B.; Brunger, A. T.; Emsley, P.; Joosten, R. P.; Kleywegt, G. J.; Krissinel, E. B.; Lütteke, T.; Otwinowski, Z.; Pe..." current
• 10:5310:53, 24 October 2013 diff hist +102 Main Page →Validation
• 10:4910:49, 24 October 2013 diff hist +1,470 N 2012Henderson Created page with "== Citation == Henderson, R.; Sali, A.; Baker, M. L.; Carragher, B.; Devkota, B.; Downing, K. H.; Egelman, E. H.; Feng, Z.; Frank, J.; Grigorieff, N.; Jiang, W.; Ludtke, S. J..." current
• 10:4710:47, 24 October 2013 diff hist +54 Main Page →Validation
• 08:4008:40, 24 October 2013 diff hist +1,715 N 2013Chen Averaging Created page with "== Citation == Chen, Y.; Pfeffer, S.; Hrabe, T.; Schuller, J. M. & Förster, F. Fast and accurate reference-free alignment of subtomograms. J. Structural Biology, 2013, 182, ..." current
• 08:3908:39, 24 October 2013 diff hist +96 Main Page →Subtomogram analysis
• 08:3508:35, 24 October 2013 diff hist +1,790 N 2013Kuybeda Averaging Created page with "== Citation == Kuybeda, O.; Frank, G. A.; Bartesaghi, A.; Borgnia, M.; Subramaniam, S. & Sapiro, G. A collaborative framework for 3D alignment and classification of heterogen..." current
• 08:3408:34, 24 October 2013 diff hist +120 Main Page →Subtomogram analysis

21 October 2013

• 05:0905:09, 21 October 2013 diff hist +1,483 N 2013Vulovic CTFApproximations Created page with "== Citation == Vulović M, Voortman LM, van Vliet LJ, Rieger B. When to use the projection assumption and the weak-phase object approximation in phase contrast cryo-EM. Ultra..." current
• 05:0705:07, 21 October 2013 diff hist +148 Main Page →Image formation

16 August 2013

• 13:2613:26, 16 August 2013 diff hist +1,195 N 2013Shigematsu Movies Created page with "== Citation == Shigematsu, H. & Sigworth, F. J. Noise models and cryo-EM drift correction with a direct-electron camera. Ultramicroscopy, 2013, 131, 61-69 == Abstract == Bl..." current
• 13:2413:24, 16 August 2013 diff hist +94 Main Page →2D Preprocessing
• 09:5709:57, 16 August 2013 diff hist +1,645 N 2012Brilot Movies Created page with "== Citation == Brilot, A. F.; Chen, J. Z.; Cheng, A.; Pan, J.; Harrison, S. C.; Potter, C. S.; Carragher, B.; Henderson, R. & Grigorieff, N. Beam-induced motion of vitrified ..." current
• 09:5609:56, 16 August 2013 diff hist +92 Main Page →2D Preprocessing

5 August 2013

• 12:3912:39, 5 August 2013 diff hist +1,404 N 2012Wriggers SitusConventions Created page with "== Citation == Wriggers, W. Conventions and workflows for using Situs. Acta Crystallogr D Biol Crystallogr, 2012, 68, 344-351 == Abstract == Situs is a modular program pack..." current
• 12:3812:38, 5 August 2013 diff hist +86 Main Page →Software

21 May 2013

• 07:0307:03, 21 May 2013 diff hist +1,929 N 2013Vargas FastDef Created page with "== Citation == Vargas, J.; Otón, J.; Marabini, R.; Jonic, S.; de la Rosa-Trevín null, J. M.; Carazo, J. M. & Sorzano, C. O. S. FASTDEF: Fast defocus and astigmatism estimat..." current
• 07:0207:02, 21 May 2013 diff hist +53 Main Page →CTF estimation and restoration
• 06:5306:53, 21 May 2013 diff hist +1,524 N 2012Bammes DirectDetection Created page with "== Citation == Bammes, B. E.; Rochat, R. H.; Jakana, J.; Chen, D.-H. & Chiu, W. Direct electron detection yields cryo-EM reconstructions at resolutions beyond 3/4 Nyquist fre..." current
• 06:5206:52, 21 May 2013 diff hist +80 Main Page →Image formation
• 06:5006:50, 21 May 2013 diff hist +1,995 N 2011Bammes CCD Created page with "== Citation == Bammes, B. E.; Rochat, R. H.; Jakana, J. & Chiu, W. Practical performance evaluation of a 10k × 10k CCD for electron cryo-microscopy. J. Structural Biology, 2..." current
• 06:4906:49, 21 May 2013 diff hist +63 Main Page →Image formation
• 06:4706:47, 21 May 2013 diff hist +1,652 N 2010Bammes Damage Created page with "== Citation == Bammes, B. E.; Jakana, J.; Schmid, M. F. & Chiu, W. Radiation damage effects at four specimen temperatures from 4 to 100 K. J. Structural Biology, 2010, 169, 3..." current
• 06:4706:47, 21 May 2013 diff hist +82 Main Page →Image formation
• 06:4206:42, 21 May 2013 diff hist +1,242 N 2012Campbell Movies Created page with "== Citation == Campbell, M. G.; Cheng, A.; Brilot, A. F.; Moeller, A.; Lyumkis, D.; Veesler, D.; Pan, J.; Harrison, S. C.; Potter, C. S.; Carragher, B. & Grigorieff, N. Movie..." current
• 06:4006:40, 21 May 2013 diff hist +94 Main Page →2D Preprocessing
• 06:3506:35, 21 May 2013 diff hist +1,482 N 2011Milazzo DirectDetectors Created page with "== Citation == Milazzo, A.-C.; Cheng, A.; Moeller, A.; Lyumkis, D.; Jacovetty, E.; Polukas, J.; Ellisman, M. H.; Xuong, N.-H.; Carragher, B. & Potter, C. S. Initial evaluatio..." current
• 06:3306:33, 21 May 2013 diff hist +80 Main Page →Image formation
• 06:2906:29, 21 May 2013 diff hist +1,458 N 2013Bai ElectronCounting Created page with "== Citation == Bai, X.-C.; Fernandez, I. S.; McMullan, G. & Scheres, S. H. Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles. Elife, 2013, ..." current
• 06:2806:28, 21 May 2013 diff hist +99 Main Page →2D Preprocessing
• 06:2806:28, 21 May 2013 diff hist +99 Main Page →Image formation
• 06:2006:20, 21 May 2013 diff hist +1,486 N 2013Li ElectronCounting Created page with "== Citation == Li, X.; Mooney, P.; Zheng, S.; Booth, C. R.; Braunfeld, M. B.; Gubbens, S.; Agard, D. A. & Cheng, Y. Electron counting and beam-induced motion correction enabl..." current
• 06:1606:16, 21 May 2013 diff hist +98 Main Page →2D Preprocessing
• 06:1506:15, 21 May 2013 diff hist +98 Main Page →Image formation

20 May 2013

• 08:3008:30, 20 May 2013 diff hist +1,229 N 2012Zhao Denoising Created page with "== Citation == Zhao, Z. & Singer, A. Fourier-Bessel rotational invariant eigenimages J. Optical Soc. America A, 2012, 30, 871-877 == Abstract == We present an efficient and..."
• 08:2708:27, 20 May 2013 diff hist +95 Main Page →2D Preprocessing
• 08:2308:23, 20 May 2013 diff hist +1,131 N 2004Wong ParticlePicking Created page with "== Citation == Wong, H. C.; Chen, J.; Mouche, F.; Rouiller, I. & Bern, M. Model-based particle picking for cryo-electron microscopy J. Structural Biology, 2004, 145, 157-167 ..." current
• 08:2208:22, 20 May 2013 diff hist +104 Main Page →Automatic particle picking
• 08:1908:19, 20 May 2013 diff hist +1,079 N 2004Volkmann ParticlePicking Created page with "== Citation == Volkmann, N. An approach to automated particle picking from electron micrographs based on reduced representation templates J. Structural Biology, 2004, 145, 15..." current
• 08:1808:18, 20 May 2013 diff hist +160 Main Page →Automatic particle picking
• 08:1508:15, 20 May 2013 diff hist +1,067 N 2004Sigworth Detection Created page with "== Citation == Sigworth, F. J. Classical detection theory and the cryo-EM particle selection problem J. Structural Biology, 2004, 145, 111-122 == Abstract == Particle selec..." current
• 08:1408:14, 20 May 2013 diff hist +114 Main Page →Automatic particle picking
• 08:0908:09, 20 May 2013 diff hist +1,075 N 2008Shaikh SpiderProtocols Created page with "== Citation == Shaikh, T. R.; Gao, H.; Baxter, W.; Asturias, F. J.; Boisset, N.; Leith, A. & Frank, J. SPIDER image processing for single-particle reconstruction of biologica..." current
• 08:0808:08, 20 May 2013 diff hist +65 Main Page →Software
• 08:0608:06, 20 May 2013 diff hist +916 N 2007Chen Signature Created page with "== Citation == Chen, J. Z. & Grigorieff, N. SIGNATURE: a single-particle selection system for molecular electron microscopy. J. Structural Biology, 2007, 157, 168-173 == Abs..." current
• 08:0108:01, 20 May 2013 diff hist +86 Main Page →Automatic particle picking
• 07:5707:57, 20 May 2013 diff hist +1,886 N 2011Arbelaez Comparison Created page with "== Citation == Arbeláez, P.; Han, B.-G.; Typke, D.; Lim, J.; Glaeser, R. M. & Malik, J. Experimental evaluation of support vector machine-based and correlation-based approac..." current
• 07:5507:55, 20 May 2013 diff hist +117 Main Page →Automatic particle picking

10 May 2013

• 06:0806:08, 10 May 2013 diff hist +1,998 N 2013Norousi Screening Created page with "== Citation == Norousi, R.; Wickles, S.; Leidig, C.; Becker, T.; Schmid, V. J.; Beckmann, R. & Tresch, A. Automatic post-picking using MAPPOS improves particle image detectio..." current
• 06:0406:04, 10 May 2013 diff hist +84 Main Page →2D Preprocessing