User contributions for CoSS

7 January 2016

• 11:5111:51, 7 January 2016 diff hist +737 N 1996Fung Automatic Created page with "== Citation == Fung, J. C.; Liu, W.; de Ruitjer, W. J.; Chen, H.; Abbey, C. K.; Sedat, J. W. & Agard, D. A. Toward fully automated high-resolution electron tomography J. Stru..." current
• 11:4911:49, 7 January 2016 diff hist +81 Main Page →Automated data collection
• 11:4511:45, 7 January 2016 diff hist +2,127 N 2015Moriya Bayesian Created page with "== Citation == Moriya, T.; Acar, E.; Cheng, R. H. & Ruotsalainen, U. A Bayesian approach for suppression of limited angular sampling artifacts in single particle 3D reconstru..."
• 11:4311:43, 7 January 2016 diff hist +97 Main Page →3D Reconstruction

4 January 2016

• 08:4608:46, 4 January 2016 diff hist +1,600 N 2016Yang Flexible Created page with "== Citation == Yang, S.; Woodhead, J. L.; Zhao, F.-Q.; Sulbarán, G. & Craig, R. An approach to improve the resolution of helical filaments with a large axial rise and flexib..." current
• 08:4508:45, 4 January 2016 diff hist +97 Main Page →Filament corrections

29 December 2015

• 09:4109:41, 29 December 2015 diff hist +2,067 N 2015Rubinstein Alignment Created page with "== Citation == Rubinstein, J. L. & Brubaker, M. A. Alignment of cryo-EM movies of individual particles by optimization of image translations. J Struct Biol, 2015, 192, 188-19..." current
• 09:4009:40, 29 December 2015 diff hist +87 Main Page →2D Preprocessing
• 09:3709:37, 29 December 2015 diff hist +1,328 N 2015Lobato MULTEM Created page with "== Citation == Lobato, I. & Van Dyck, D. MULTEM: A new multislice program to perform accurate and fast electron diffraction and imaging simulations using Graphics Processing ..." current
• 09:3609:36, 29 December 2015 diff hist +76 Main Page →Image formation
• 09:3309:33, 29 December 2015 diff hist +1,341 N 2015Dvornek SubspaceEM Created page with "== Citation == Dvornek, N. C.; Sigworth, F. J. & Tagare, H. D. SubspaceEM: A fast maximum-a-posteriori algorithm for cryo-EM single particle reconstruction. J Struct Biol, 20..." current
• 09:3309:33, 29 December 2015 diff hist +70 Main Page →3D Reconstruction
• 09:2809:28, 29 December 2015 diff hist +1,083 N 2015vanAarle Astra Created page with "== Citation == van Aarle, W.; Palenstijn, W. J.; De Beenhouwer, J.; Altantzis, T.; Bals, S.; Batenburg, K. J. & Sijbers, J. The ASTRA Toolbox: A platform for advanced algorit..." current
• 09:2609:26, 29 December 2015 diff hist +54 Main Page →Software
• 09:2409:24, 29 December 2015 diff hist +1,511 N 2015Sheth CTFquality Created page with "== Citation == Sheth, L. K.; Piotrowski, A. L. & Voss, N. R. Visualization and quality assessment of the contrast transfer function estimation. J Struct Biol, 2015, 222-234 ..." current
• 09:2309:23, 29 December 2015 diff hist +86 Main Page →CTF estimation and restoration
• 09:0509:05, 29 December 2015 diff hist +1,253 N 2015Grant Anisotropic Created page with "== Citation == Grant, T. & Grigorieff, N. Automatic estimation and correction of anisotropic magnification distortion in electron microscopes. J Struct Biol, 2015, 192, 204-2..." current
• 09:0409:04, 29 December 2015 diff hist +108 Main Page →2D Preprocessing

28 December 2015

• 11:3011:30, 28 December 2015 diff hist +1,074 N 2016Koeck ADF Created page with "== Citation == Koeck, P. J. B. Annular dark field transmission electron microscopy for protein structure determination. Ultramicroscopy, 2016, 161, 98-104 == Abstract == Re..." current
• 11:2811:28, 28 December 2015 diff hist +73 Main Page →Image formation
• 11:2111:21, 28 December 2015 diff hist +1,607 N 2016Zhang GCTF Created page with "== Citation == Zhang, K. Gctf: real-time CTF determination and correction. J Struct Biol, 2016, 193: 1-12 == Abstract == Accurate estimation of the contrast transfer functi..." current
• 11:2011:20, 28 December 2015 diff hist +41 Main Page →CTF estimation and restoration
• 11:1011:10, 28 December 2015 diff hist +1,748 N 2007Woolford SwarmPS Created page with "== Citation == Woolford, D.; Ericksson, G.; Rothnagel, R.; Muller, D.; Landsberg, M. J.; Pantelic, R. S.; McDowall, A.; Pailthorpe, B.; Young, P. R.; Hankamer, B. & Banks, J...." current
• 11:0911:09, 28 December 2015 diff hist +1 Main Page →Automatic particle picking
• 11:0811:08, 28 December 2015 diff hist +118 Main Page →Automatic particle picking
• 10:5110:51, 28 December 2015 diff hist +1,437 N 2014Wasilewski Tilt Created page with "== Citation == Wasilewski, S. & Rosenthal, P. B. Web server for tilt-pair validation of single particle maps from electron cryomicroscopy. J. Structural Biology, 2014, 186, 1..." current
• 10:4910:49, 28 December 2015 diff hist +88 Main Page →Validation
• 10:2910:29, 28 December 2015 diff hist +27 N 2015Wu Review CoSS moved page 2015Wu Review to 2016Wu Review current
• 10:2910:29, 28 December 2015 diff hist 0 m 2016Wu Review CoSS moved page 2015Wu Review to 2016Wu Review current
• 10:2710:27, 28 December 2015 diff hist +796 N 2016Wu Review Created page with "== Citation == Wu, S.; Armache, J.-P. & Cheng, Y. Single-particle cryo-EM data acquisition by using direct electron detection camera. Microscopy, 2015 == Abstract == Recent..."
• 10:2510:25, 28 December 2015 diff hist +81 Main Page →Books and reviews
• 10:1510:15, 28 December 2015 diff hist +1,668 N 2003Kovacs FRM3D Created page with "== Citation == Kovacs, J. A.; Chacón, P.; Cong, Y.; Metwally, E. & Wriggers, W. Fast rotational matching of rigid bodies by fast Fourier transform acceleration of five degre..." current
• 10:1410:14, 28 December 2015 diff hist +79 Main Page →Fitting and docking
• 10:1210:12, 28 December 2015 diff hist +1,379 N 2005Cong FRM2D Created page with "== Citation == Cong, Y.; Jiang, W.; Birmanns, S.; Zhou, Z. H.; Chiu, W. & Wriggers, W. Fast rotational matching of single-particle images. J Struct Biol, 2005, 152, 104-112 ..." current
• 10:1110:11, 28 December 2015 diff hist +1,738 N 2003Cong FRM2D Created page with "== Citation == Cong, Y.; Kovacs, J. A. & Wriggers, W. 2D fast rotational matching for image processing of biophysical data. J Struct Biol, 2003, 144, 51-60 == Abstract == I..." current
• 10:1010:10, 28 December 2015 diff hist +173 Main Page →2D Alignment

23 December 2015

• 11:5711:57, 23 December 2015 diff hist +1,730 N 2015Ding CaltechTomography Created page with "== Citation == Ding, H. J.; Oikonomou, C. M. & Jensen, G. J. The Caltech Tomography Database and Automatic Processing Pipeline. J Struct Biol, 2015, 192, 279-286 == Abstract..." current
• 11:5511:55, 23 December 2015 diff hist +76 Main Page →Software
• 11:5111:51, 23 December 2015 diff hist +1,159 N 2015Noble AppionProtomo Created page with "== Citation == Noble, A. J. & Stagg, S. M. Automated batch fiducial-less tilt-series alignment in Appion using Protomo. J Struct Biol, 2015, 192, 270-278 == Abstract == The..." current
• 11:5011:50, 23 December 2015 diff hist +111 Main Page →Software

23 November 2015

• 14:1314:13, 23 November 2015 diff hist +1,892 N 2015Wriggers Secondary Created page with "== Citation == Wriggers, W. & He, J. Numerical geometry of map and model assessment. J Struct Biol, 2015, 192, 255-261 == Abstract == We are describing best practices and a..." current
• 14:1214:12, 23 November 2015 diff hist +78 Main Page →Validation
• 14:0314:03, 23 November 2015 diff hist +1,361 N 2015Zhang seam Created page with "== Citation == Zhang, R. & Nogales, E. A new protocol to accurately determine microtubule lattice seam location. J Struct Biol, 2015, 192, 245-254 == Abstract == Microtubul..." current
• 14:0214:02, 23 November 2015 diff hist +83 Main Page →Reconstruction
• 12:2912:29, 23 November 2015 diff hist +1,869 N 2015Oliveira FreqLimited Created page with "== Citation == Oliveira Passos, D. & Lyumkis, D. Single-particle cryoEM analysis at near-atomic resolution from several thousand asymmetric subunits. J Struct Biol, 2015, 192..." current
• 12:2812:28, 23 November 2015 diff hist +109 Main Page →Validation
• 12:1112:11, 23 November 2015 diff hist +1,094 N 2015Rohou CTFFind4 Created page with "== Citation == Rohou, A. & Grigorieff, N. CTFFIND4: Fast and accurate defocus estimation from electron micrographs. J Struct Biol, 2015, 192, 216-221 == Abstract == CTFFIND..." current
• 12:0312:03, 23 November 2015 diff hist +51 Main Page →CTF estimation and restoration
• 11:4311:43, 23 November 2015 diff hist +1,674 N 2015Spear DoseCompensation Created page with "== Citation == Spear, J. M.; Noble, A. J.; Xie, Q.; Sousa, D. R.; Chapman, M. S. & Stagg, S. M. The influence of frame alignment with dose compensation on the quality of sing..." current
• 11:4211:42, 23 November 2015 diff hist +90 Main Page →2D Preprocessing