User contributions for WikiSysop

3 March 2020

• 21:2621:26, 3 March 2020 diff hist +1,456 N 2020Song Tygress Created page with "== Citation == Song, K.; Shang, Z.; Fu, X.; Lou, X.; Grigorieff, N. & Nicastro, D. In situ structure determination at nanometer resolution using TYGRESS. Nature methods, 202..." current
• 21:2521:25, 3 March 2020 diff hist +104 Main Page →3D reconstruction
• 21:2221:22, 3 March 2020 diff hist +1,806 N 1988Stewart Rec Created page with "== Citation == Stewart, M. Computer image processing of electron micrographs of biological structures with helical symmetry. Journal of electron microscopy technique, 1988 ,..." current
• 21:1921:19, 3 March 2020 diff hist +1,326 N 2010Egelman Pitfalls Created page with "== Citation == Egelman, E. H. Reconstruction of helical filaments and tubes. Methods in enzymology, 2010 , 482 , 167-183 == Abstract == While Fourier-Bessel methods gave..." current
• 21:1821:18, 3 March 2020 diff hist +163 Main Page →Reconstruction

2 March 2020

• 12:5212:52, 2 March 2020 diff hist +1,590 N 2020Joseph comparison Created page with "== Citation == Joseph, A. P.; Lagerstedt, I.; Jakobi, A.; Burnley, T.; Patwardhan, A.; Topf, M. & Winn, M. Comparing Cryo-EM Reconstructions and Validating Atomic Model Fit U..." current
• 12:5112:51, 2 March 2020 diff hist +84 Main Page →Fitting and docking

24 February 2020

• 20:5720:57, 24 February 2020 diff hist +2,172 N 2020Vilas Bfactor Created page with "== Citation == Vilas, J. L.; Vargas, J.; Martinez, M.; Ramirez-Aportela, E.; Melero, R.; Jimenez-Moreno, A.; Garduño, E.; Conesa, P.; Marabini, R.; Maluenda, D.; Carazo, J...." current
• 20:5720:57, 24 February 2020 diff hist +100 Main Page →Sharpening of high resolution information
• 20:5220:52, 24 February 2020 diff hist +1,672 N 2020Stojkovic PTM Created page with "== Citation == Stojković, V.; Myasnikov, A. G.; Young, I. D.; Frost, A.; Fraser, J. S. & Fujimori, D. G. Assessment of the nucleotide modifications in the high-resolution cr..." current
• 20:5120:51, 24 February 2020 diff hist +86 Main Page →Validation

21 February 2020

• 05:2605:26, 21 February 2020 diff hist +1,750 N 2010Pintilie segger Created page with "== Citation == Pintilie, G. D.; Zhang, J.; Goddard, T. D.; Chiu, W. & Gossard, D. C. Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space fi..." current
• 05:2505:25, 21 February 2020 diff hist +76 Main Page →Segmentation

14 February 2020

• 05:5905:59, 14 February 2020 diff hist +991 N 2018Rupp Problems Created page with "== Citation == Rupp, B. Against Method: Table 1-Cui Bono? Structure, 2018 , 26 , 919-923 == Abstract == The almost universally required "Table 1," summarizing data-collec..." current
• 05:5805:58, 14 February 2020 diff hist +96 Main Page →Resolution

14 January 2020

• 22:0222:02, 14 January 2020 diff hist +1,413 N 2019Li Deep Created page with "== Citation == Li, X.; Lin, Y.; Liu, Q.; McSweeney, S. & Yoo, S. Picking Particles in Cryo-EM Micrographs without Knowing the Particle Size 2019 New York Scientific Data Sum..." current
• 22:0122:01, 14 January 2020 diff hist +90 Main Page →Automatic particle picking
• 21:5221:52, 14 January 2020 diff hist +1,500 N 2019Wu BeamShiftAndTilt Created page with "== Citation == Wu, C.; Huang, X.; Cheng, J.; Zhu, D. & Zhang, X. High-quality, high-throughput cryo-electron microscopy data collection via beam tilt and astigmatism-free bea..." current
• 21:5121:51, 14 January 2020 diff hist +109 Main Page →Collection geometry

7 January 2020

• 19:0819:08, 7 January 2020 diff hist +1,525 N 2019Maluenda Scipion Created page with "== Citation == Maluenda, D.; Majtner, T.; Horvath, P.; Vilas, J. L.; Jiménez-Moreno, A.; Mota, J.; Ramírez-Aportela, E.; Sánchez-García, R.; Conesa, P.; Del Caño, L.; Ra..." current
• 19:0719:07, 7 January 2020 diff hist +87 Main Page →Automated data collection
• 19:0019:00, 7 January 2020 diff hist +986 N 2020Vilas MonoDir Created page with "== Citation == Vilas, J. L.; Tagare, H. D.; Vargas, J.; Carazo, J. M. & Sorzano, C. O. S. Measuring local-directional resolution and local anisotropy in cryo-EM maps. Nature..." current
• 18:5918:59, 7 January 2020 diff hist +72 Main Page →Resolution
• 18:5618:56, 7 January 2020 diff hist +2,191 N 2020Harastani NMA Created page with "== Citation == Harastani, M.; Sorzano, C. O. S. & Jonić, S. Hybrid Electron Microscopy Normal Mode Analysis with Scipion. Protein science, 2020 , 29 , 223-236 == Abstract..." current
• 18:5518:55, 7 January 2020 diff hist +105 Main Page →3D Heterogeneity

27 December 2019

• 07:5407:54, 27 December 2019 diff hist +1,371 N 2019Carrasco IP Created page with "== Citation == Carrasco, M.; Toledo, P. & Tischler, N. D. Macromolecule Particle Picking and Segmentation of a KLH Database by Unsupervised Cryo-EM Image Processing. Biomole..." current
• 07:5307:53, 27 December 2019 diff hist +91 Main Page →Automatic particle picking
• 07:4507:45, 27 December 2019 diff hist +1,177 N 2019Benjin Review Created page with "== Citation == Benjin, X. & Ling, L. Developments, applications, and prospects of cryo-electron microscopy. Protein science, 2019, 1-11 == Abstract == Cryo-electron micros..." current
• 07:4307:43, 27 December 2019 diff hist +54 Main Page →Books and reviews
• 07:3207:32, 27 December 2019 diff hist +2,030 N 2019Gomez Initial Created page with "== Citation == Gomez-Blanco, J.; Kaur, S.; Ortega, J. & Vargas, J. A robust approach to ab initio cryo-electron microscopy initial volume determination. J. Structural Biolog..." current
• 07:3007:30, 27 December 2019 diff hist +69 Main Page →3D Reconstruction

30 November 2019

• 07:4807:48, 30 November 2019 diff hist −4 2016Murshudov Refinement →Citation current
• 07:4807:48, 30 November 2019 diff hist +1,822 N 2016Murshudov Refinement Created page with "== Citation == Murshudov, G. N. Refinement of atomic structures against cryo-EM maps Methods in enzymology, 2016, 579, 277-305 == Abstract == This review describes so..."
• 07:4707:47, 30 November 2019 diff hist +108 Main Page →Fitting and docking

9 November 2019

• 20:5120:51, 9 November 2019 diff hist +611 N 2019Bepler Topaz Created page with "== Citation == Bepler, T.; Morin, A.; Rapp, M.; Brasch, J.; Shapiro, L.; Noble, A. J. & Berger, B. TOPAZ: A Positive-Unlabeled Convolutional Neural Network CryoEM Particle Pi..." current
• 20:4920:49, 9 November 2019 diff hist +74 Main Page →Automatic particle picking

7 November 2019

• 21:0321:03, 7 November 2019 diff hist +1,382 N 2019Ramirez DeepRes Created page with "== Citation == Ramírez-Aportela, E.; Mota, J.; Conesa, P.; Carazo, J. M. & Sorzano, C. O. S. DeepRes: a new deep-learning- and aspect-based local resolution method for elect..." current
• 21:0321:03, 7 November 2019 diff hist +83 Main Page →Resolution
• 20:5620:56, 7 November 2019 diff hist +2,176 N 2019Han Constrained Created page with "== Citation == Han, R.; Li, L.; Yang, P.; Zhang, F. & Gao, X. A novel constrained reconstruction model towards high-resolution sub-tomogram averaging. Bioinformatics (Oxford..." current
• 20:5520:55, 7 November 2019 diff hist +89 Main Page →Subtomogram analysis
• 20:4820:48, 7 November 2019 diff hist +1,071 N 2019Goetschius Asymmetric Created page with "== Citation == Goetschius, D. J.; Lee, H. & Hafenstein, S. CryoEM reconstruction approaches to resolve asymmetric features. Advances in virus research, 2019 , 105 , 73-91..." current
• 20:4720:47, 7 November 2019 diff hist +104 Main Page →Reconstruction
• 20:3920:39, 7 November 2019 diff hist +983 N 2019Fokine Enhancement Created page with "== Citation == Fokine, A.; Khare, B.; Sun, Y. & Rossmann, M. G. Enhancement of tomogram interpretability using the locked self-rotation function. Journal of structural biolo..." current
• 20:3920:39, 7 November 2019 diff hist +100 Main Page →Subtomogram analysis
• 20:3420:34, 7 November 2019 diff hist +1,154 N 2019Danev Review Created page with "== Citation == Danev, R.; Yanagisawa, H. & Kikkawa, M. Cryo-Electron Microscopy Methodology: Current Aspects and Future Directions. Trends in biochemical sciences, 2019 , 44..." current
• 20:3320:33, 7 November 2019 diff hist +66 Main Page →Books and reviews
• 20:1520:15, 7 November 2019 diff hist +1,902 N 2019Ohashi SoftBody Created page with "== Citation == Ohashi, M.; Maeda, S.-i. & Sato, C. Bayesian inference for three-dimensional helical reconstruction using a soft-body model Physical Review E, APS, 2019 , 100..." current
• 20:1420:14, 7 November 2019 diff hist +98 Main Page →Filament corrections
• 19:5719:57, 7 November 2019 diff hist +395 N 2019Klaholz Review Created page with "== Citation == Klaholz, B. P. Deriving and refining atomic models in crystallography and cryo-EM: the latest Phenix tools to facilitate structure analysis. Acta crystallogra..." current
• 19:5619:56, 7 November 2019 diff hist +76 Main Page →Fitting and docking