User contributions for WikiSysop

27 January 2021

• 08:2208:22, 27 January 2021 diff hist +2,772 N 2020Alazzawi Auto Created page with "== Citation == Al-Azzawi, A.; Ouadou, A.; Duan, Y.; Cheng, J. Auto3DCryoMap: an automated particle alignment approach for 3D cryo-EM density map reconstruction. BMC bioinform..." current
• 08:1908:19, 27 January 2021 diff hist +110 Main Page →3D Reconstruction

25 January 2021

• 07:1107:11, 25 January 2021 diff hist +846 N 2020Cragnolini Tempy2 Created page with "== Citation == Cragnolini, T.; Sahota, H.; Joseph, A. P.; Sweeney, A.; Malhotra, S.; Vasishtan, D.; Topf, M. TEMPy2: a Python library with improved 3D electron microscopy den..." current
• 06:5906:59, 25 January 2021 diff hist +93 Main Page →Fitting and docking

15 January 2021

• 16:3116:31, 15 January 2021 diff hist +1,643 N 2021Kimanius PriorKnowledge Created page with "== Citation == Kimanius, D.; Zickert, G.; Nakane, T.; Adler, J.; Lunz, S.; Schonlieb, C.-B.; Oktem, O.; Scheres, S. Exploiting prior knowledge about biological macromolecules..." current
• 16:3016:30, 15 January 2021 diff hist +107 Main Page →3D Reconstruction
• 16:1716:17, 15 January 2021 diff hist +1,831 N 2020Liebschner Ceres Created page with "== Citation == Liebschner, D.; Afonine, P. V.; Moriarty, N. W.; Poon, B. K.; Chen, V. B.; Adams, P. D. CERES: a cryo-EM re-refinement system for continuous improvement of dep..." current
• 16:1516:15, 15 January 2021 diff hist +118 Main Page →Fitting and docking

13 January 2021

• 15:0615:06, 13 January 2021 diff hist +374 N 2020Basanta workflow Created page with "== Citation == Basanta, B.; Chowdhury, S.; Lander, G. C.; Grotjahn, D. A. A guided approach for subtomogram averaging of challenging macromolecular assemblies. Journal of str..." current
• 14:5314:53, 13 January 2021 diff hist +77 Main Page →Resolution
• 14:5314:53, 13 January 2021 diff hist −1 Main Page →Subtomogram analysis
• 14:3214:32, 13 January 2021 diff hist +1,578 N 2020Vilas Monotomo Created page with "== Citation == Vilas, J.; Oton, J.; Messaoudi, C.; Melero, R.; Conesa, P.; Ramirez-Aportela, E.; Mota, J.; Martinez, M.; Jimenez, A.; Marabini, R.; J.M. Carazo; J. Vargas; C...." current
• 14:2714:27, 13 January 2021 diff hist +77 Main Page →Subtomogram analysis
• 14:2314:23, 13 January 2021 diff hist +1,268 N 2019Subramaniya DeepSSE Created page with "== Citation == Subramaniya, R.; Terashi, G.; Kihara, D. Protein secondary structure detection in intermediate-resolution cryo-EM maps using deep learning. Nature methods, 201..." current
• 14:2114:21, 13 January 2021 diff hist +106 Main Page →Fitting and docking
• 14:0114:01, 13 January 2021 diff hist −46 2020Huang SuperResolution →Abstract current
• 13:5813:58, 13 January 2021 diff hist +1,764 N 2020Huang SuperResolution Created page with "== Citation == Huang, Q.; Zhou, Y.; Du, X.; Chen, R.; Wang, J.; Rudin, C.; Bartesaghi, A. Cryo-ZSSR: multiple-image super-resolution basedon deep internal learning. Proc. 34t..."
• 13:5713:57, 13 January 2021 diff hist +104 Main Page →2D Preprocessing
• 11:5511:55, 13 January 2021 diff hist +1,339 N 2021Saltzberg IMP Created page with "== Citation == Saltzberg, D. J.; Viswanath, S.; Echeverria, I.; Chemmama, I. E.; Webb, B.; Sali, A. Using Integrative Modeling Platform to compute, validate, and archive a mo..." current
• 11:5411:54, 13 January 2021 diff hist +101 Main Page →Fitting and docking

11 January 2021

• 13:0013:00, 11 January 2021 diff hist +1,584 2020Palovcak noise2noise No edit summary current
• 12:5912:59, 11 January 2021 diff hist +124 N 2020Palovcak noise2noise Created page with "== Citation == == Abstract == == Keywords == == Links == == Related software == == Related methods == == Comments =="
• 12:5812:58, 11 January 2021 diff hist +83 Main Page →2D Preprocessing
• 12:3312:33, 11 January 2021 diff hist +2,339 N 2020Xie Network Created page with "== Citation == Xie, R.; Chen, Y.-X.; Cai, J.-M.; Yang, Y.; Shen, H.-B. SPREAD: A Fully Automated Toolkit for Single-Particle Cryogenic Electron Microscopy Data 3D Reconstruct..." current
• 12:3212:32, 11 January 2021 diff hist +93 Main Page →3D Alignment

8 January 2021

• 10:4010:40, 8 January 2021 diff hist +1,788 N 2019Rubinstein ultrasonic Created page with "== Citation == Rubinstein, J. L.; Guo, H.; Ripstein, Z. A.; Haydaroglu, A.; Au, A.; Yip, C. M.; Di Trani, J. M.; Benlekbir, S.; Kwok, T. Shake-it-off: a simple ultrasonic cry..." current
• 10:3910:39, 8 January 2021 diff hist +85 Main Page →Sample preparation
• 10:3010:30, 8 January 2021 diff hist +1,186 N 2020Naydenova Buckling Created page with "== Citation == Naydenova, K.; Jia, P.; Russo, C. J. Cryo-EM with sub-1 Å specimen movement. Science, 2020, 370, 223-226 == Abstract == Most information loss in cryogenic..." current
• 10:2910:29, 8 January 2021 diff hist +92 Main Page →Image formation
• 10:0810:08, 8 January 2021 diff hist +1,712 N 2020Terwilliger density Created page with "== Citation == Terwilliger, T. C.; Sobolev, O. V.; Afonine, P. V.; Adams, P. D.; Read, R. J. Density modification of cryo-EM maps. Acta crystallographica. Section D, Structur..." current
• 10:0610:06, 8 January 2021 diff hist +81 Main Page →Sharpening of high resolution information
• 09:4609:46, 8 January 2021 diff hist +1,943 N 2020Caesar Simple3 Created page with "== Citation == Caesar, J.; Reboul, C. F.; Machello, C.; Kiesewetter, S.; Tang, M. L.; Deme, J. C.; Johnson, S.; Elmlund, D.; Lea, S. M.; Elmlund, H. SIMPLE 3.0. Stream single..." current
• 09:4509:45, 8 January 2021 diff hist +49 Main Page →Software
• 09:2309:23, 8 January 2021 diff hist +1,407 N 2020Moebel MCMC Created page with "== Citation == Moebel, E., Kervrann, C. A Monte Carlo framework for missing wedge restoration and noise removal in cryo-electron tomography. Journal of Structural Biology: X,..." current
• 09:2209:22, 8 January 2021 diff hist +92 Main Page →Missing-wedge correction

5 January 2021

• 10:3710:37, 5 January 2021 diff hist +1,490 N 2020Chung Prepro Created page with "== Citation == Chung, S.-C.; Lin, H.-H.; Niu, P.-Y.; Huang, S.-H.; Tu, I.-P. & Chang, W.-H. Pre-pro is a fast pre-processor for single-particle cryo-EM by enhancing 2D cl..." current
• 10:3610:36, 5 January 2021 diff hist +86 Main Page →2D Preprocessing
• 09:5109:51, 5 January 2021 diff hist +1,345 N 2020Beckers Permutation Created page with "== Citation == Beckers, M.; Sachse, C. Permutation testing of Fourier shell correlation for resolution estimation of cryo-EM maps. J. Structural Biology, 2020, 212, 107579..."
• 09:4709:47, 5 January 2021 diff hist +75 Main Page →Resolution
• 08:4008:40, 5 January 2021 diff hist −1 2020Penczek mFSC No edit summary current
• 08:3908:39, 5 January 2021 diff hist +1,720 N 2020Penczek mFSC Created page with "== Citation == Penczek, P. A. Reliable cryo-EM resolution estimation with modified Fourier shell correlation. IUCrJ, 2020, 7 == Abstract == A modified Fourier shell correl..."
• 08:3408:34, 5 January 2021 diff hist +83 Main Page →Resolution
• 07:3807:38, 5 January 2021 diff hist +1,548 N 2020Punjani NonUniform Created page with "== Citation == Punjani, A.; Zhang, H.; Fleet, D. J. Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstruction. Nature Methods, 2020, 17,..." current
• 07:3707:37, 5 January 2021 diff hist +67 Main Page →3D Reconstruction

25 December 2020

• 11:3211:32, 25 December 2020 diff hist +94 Main Page →Online courses and Learning material

26 October 2020

• 08:3708:37, 26 October 2020 diff hist +1,778 N 2020Tichelaar Thick Created page with "== Citation == Tichelaar, W.; Hagen, W. J. H.; Gorelik, T. E.; Xue, L.; Mahamid, J. TEM bright field imaging of thick specimens: nodes in Thon ring patterns. Ultramicroscopy,..." current
• 08:3508:35, 26 October 2020 diff hist +206 Main Page →Image formation

5 October 2020

• 14:0514:05, 5 October 2020 diff hist +2,107 N 2020Gruza Atomic Created page with "== Citation == Gruza, B.; Chodkiewicz, M. L.; Krzeszczakowska, J.; Dominiak, P. M. Refinement of organic crystal structures with multipolar electron scattering factors. Acta..." current
• 14:0114:01, 5 October 2020 diff hist +109 Main Page →Image formation

29 September 2020

• 08:4608:46, 29 September 2020 diff hist −2 2020Zhang LimitsSimulated →Citation current