User contributions for WikiSysop

28 June 2023

• 07:1707:17, 28 June 2023 diff hist +1,783 N 2022Sorzano Validation Created page with "== Citation == Sorzano, C. O. S. / Vilas, J. L. / Ram\irez-Aportela, Erney / Krieger, J. / Del Hoyo, D. / de Isidro-Gómez, F. / Herreros, David / Fernandez-Giménez, Estrell..." current
• 07:0807:08, 28 June 2023 diff hist +81 Main Page →Validation

26 June 2023

• 09:1009:10, 26 June 2023 diff hist +1,649 N 2022Liu Isonet Created page with "== Citation == Liu, Yun-Tao / Zhang, Heng / Wang, Hui / Tao, Chang-Lu / Bi, Guo-Qiang / Zhou, Z. Hong. Isotropic reconstruction for electron tomography with deep learning. 20..." current
• 09:1009:10, 26 June 2023 diff hist +82 Main Page →Noise reduction
• 08:4708:47, 26 June 2023 diff hist +1,240 N 2022Urzhumtsev XrayEM Created page with "== Citation == Urzhumtsev, Alexandre / Lunin, Vladimir Y. Analytic modeling of inhomogeneous-resolution maps in cryo-electron microscopy and crystallography. 2022. IUCrJ, Vol..." current
• 08:3208:32, 26 June 2023 diff hist +97 Main Page →Fitting and docking

23 June 2023

• 13:0613:06, 23 June 2023 diff hist +1,065 N 2022Bepler Smart Created page with "== Citation == Bepler, Tristan / Borst, Andrew J. / Bouvette, Jonathan / Cannone, Giuseppe / Chen, Songye / Cheng, Anchi / Cheng, Ao / Fan, Quanfu / Grollios, Fanis / Gupta,..." current
• 13:0213:02, 23 June 2023 diff hist +60 Main Page →Automated data collection
• 09:3409:34, 23 June 2023 diff hist +1,454 N 2023Marshall PCA Created page with "== Citation == Marshall, Nicholas F. / Mickelin, Oscar / Shi, Yunpeng / Singer, Amit. Fast principal component analysis for cryo-electron microscopy images. 2023. Biological..." current
• 09:3409:34, 23 June 2023 diff hist +73 Main Page →2D Preprocessing
• 08:4408:44, 23 June 2023 diff hist +1,736 N 2022Garcia DeepHand Created page with "== Citation == Garcia Condado, J. / Muñoz-Barrutia, A. / Sorzano, C. O. S. Automatic determination of the handedness of Single-Particle maps of macromolecules solved by Cryo..." current
• 08:3508:35, 23 June 2023 diff hist +95 Main Page →Validation
• 08:1508:15, 23 June 2023 diff hist +1,367 N 2022Havelkova regularization Created page with "== Citation == Havelková, Eva / Hnětynková, Iveta. Iterative hybrid regularization for extremely noisy full models in single particle analysis. 2023. Linear Algebra and it..." current
• 08:1308:13, 23 June 2023 diff hist +104 Main Page →3D Reconstruction

16 June 2023

• 09:2109:21, 16 June 2023 diff hist +1,686 N 2022Levy CryoFire Created page with "== Citation == Levy, Axel / Wetzstein, Gordon / Martel, Julien N. P. / Poitevin, Frederic / Zhong, Ellen Amortized Inference for Heterogeneous Reconstruction in Cryo-EM 202..." current
• 09:2109:21, 16 June 2023 diff hist +110 Main Page →3D Heterogeneity

15 June 2023

• 05:5905:59, 15 June 2023 diff hist +1,703 N 2023Bendory Autocorrelation Created page with "== Citation == Bendory, Tamir / Khoo, Yuehaw / Kileel, Joe / Mickelin, Oscar / Singer, Amit. Autocorrelation analysis for cryo-EM with sparsity constraints: Improved sample c..." current
• 05:5505:55, 15 June 2023 diff hist +123 Main Page →3D Reconstruction
• 05:4305:43, 15 June 2023 diff hist +1,814 N 2022Hohle Ice Created page with "== Citation == Hohle, Markus Matthias / Lammens, Katja / Gut, Fabian / Wang, Bingzhi / Kahler, Sophia / Kugler, Kathrin / Till, Michael / Beckmann, Roland / Hopfner, Karl-Pet..." current
• 05:4205:42, 15 June 2023 diff hist +83 Main Page →Automated data collection
• 05:3605:36, 15 June 2023 diff hist +1,674 N 2023Esteve Spectral Created page with "== Citation == Esteve-Yagüe, Carlos / Diepeveen, Willem / Öktem, Ozan / Schönlieb, Carola-Bibiane Spectral decomposition of atomic structures in heterogeneous cryo-EM. 2..." current
• 05:3505:35, 15 June 2023 diff hist +134 Main Page →3D Heterogeneity

14 June 2023

• 08:4408:44, 14 June 2023 diff hist +2,024 N 2022Wu Manifold Created page with "== Citation == Wu, Zhaolong / Chen, Enbo / Zhang, Shuwen / Ma, Yinping / Mao, Youdong Visualizing conformational space of functional biomolecular complexes by deep manifold..." current
• 08:4208:42, 14 June 2023 diff hist +88 Main Page →3D Heterogeneity
• 07:5807:58, 14 June 2023 diff hist +1,541 N 2022Eldar ASOCEM Created page with "== Citation == Eldar, Amitay / Amos, Ido / Shkolnisky, Yoel ASOCEM: Automatic Segmentation Of Contaminations in cryo-EM 2022. Journal of Structural Biology, Vol. 214, No. 3..." current
• 07:5707:57, 14 June 2023 diff hist +79 Main Page →Automatic particle picking

12 June 2023

• 06:4406:44, 12 June 2023 diff hist +3,003 N 2022Jimenez ScipionTomo Created page with "== Citation == Jiménez de la Morena, J. / Conesa, P. / Fonseca, Y. C. / de Isidro-Gómez, F. P. / Herreros, D. / Fernández-Giménez, E. / Strelak, D. / Moebel, E. / Buchhol..." current
• 06:4306:43, 12 June 2023 diff hist +81 Main Page →Software
• 06:4006:40, 12 June 2023 diff hist +1,748 N 2022Fluty Precision Created page with "== Citation == Fluty, Adam C. / Ludtke, Steven J. Precision requirements and data compression in CryoEM/CryoET. 2022. Journal of Structural Biology, Vol. 214, No. 3, p. 10787..." current
• 06:4006:40, 12 June 2023 diff hist +85 Main Page →Software
• 06:3606:36, 12 June 2023 diff hist +1,438 N 2022Russo Review Created page with "== Citation == Russo, Christopher J. / Dickerson, Joshua L. / Naydenova, Katerina Cryomicroscopy in situ: what is the smallest molecule that can be directly identified witho..." current
• 06:3506:35, 12 June 2023 diff hist +73 Main Page →Sample preparation

7 June 2023

• 18:3318:33, 7 June 2023 diff hist +1,515 N 2022Terashi DAQ Created page with "== Citation == Terashi, Genki / Wang, Xiao / Maddhuri Venkata Subramaniya, Sai Raghavendra / Tesmer, John J. G. / Kihara, Daisuke Residue-wise local quality estimation for p..." current
• 18:3218:32, 7 June 2023 diff hist +82 Main Page →Validation

24 January 2023

• 08:3308:33, 24 January 2023 diff hist +1,538 N 2022He EMBuild Created page with "== Citation == He, Jiahua / Lin, Peicong / Chen, Ji / Cao, Hong / Huang, Sheng-You. Model building of protein complexes from intermediate-resolution cryo-EM maps with deep le..." current
• 08:3208:32, 24 January 2023 diff hist +80 Main Page →Fitting and docking
• 08:2308:23, 24 January 2023 diff hist +2,054 N 2022Kulik TAAM Created page with "== Citation == Kulik, Marta / Chodkiewicz, Michał Leszek / Dominiak, Paulina Maria. Theoretical 3D electron diffraction electrostatic potential maps of proteins modeled with..." current
• 08:2208:22, 24 January 2023 diff hist +113 Main Page →Image formation

23 January 2023

• 08:3408:34, 23 January 2023 diff hist +1,701 N 2022Moebel unsupervised Created page with "== Citation == Moebel, E. / Kervrann, C. Towards unsupervised classification of macromolecular complexes in cryo electron tomography: Challenges and opportunities, 2022, Com..." current
• 08:3308:33, 23 January 2023 diff hist +110 Main Page →Subtomogram analysis
• 08:2608:26, 23 January 2023 diff hist +2,757 N 2022Lamm MemBrain Created page with "== Citation == Lamm, L. / Righetto, R. D. / Wietrzynski, W. / Pöge, M. / Martinez-Sanchez, A. / Peng, T. / Engel, B. MemBrain: A deep learning-aided pipeline for detection o..." current
• 08:2408:24, 23 January 2023 diff hist +81 Main Page →Segmentation

20 January 2023

• 07:5807:58, 20 January 2023 diff hist +2,647 N 2022Hao Picking Created page with "== Citation == Hao, Yu / Wan, Xiaohua / Yan, Rui / Liu, Zhiyong / Li, Jintao / Zhang, Shihua / Cui, Xuefeng / Zhang, Fa. VP-Detector: A 3D multi-scale dense convolutional neu..." current
• 07:5707:57, 20 January 2023 diff hist +72 Main Page →Subtomogram analysis

16 January 2023

• 09:5609:56, 16 January 2023 diff hist +2,208 N 2022Martinez PyOrg Created page with "== Citation == Martinez-Sanchez, Antonio / Baumeister, Wolfgang / Lučić, Vladan. Statistical spatial analysis for cryo-electron tomography, 2022, Computer Methods and Progr..." current
• 09:5509:55, 16 January 2023 diff hist +92 Main Page →Software
• 09:4909:49, 16 January 2023 diff hist +2,165 N 2022Shi Denoising Created page with "== Citation == Shi, Y. / Singer, A. Ab-initio contrast estimation and denoising of cryo-EM images. 2022, Computer Methods and Programs in Biomedicine, Vol. 224: p. 107018 =..." current
• 09:0209:02, 16 January 2023 diff hist +79 Main Page →2D Preprocessing

10 January 2023

• 09:0309:03, 10 January 2023 diff hist +1,800 N 2022Gilles Wilson Created page with "== Citation == Gilles, Marc Aurèle / Singer, Amit. A molecular prior distribution for Bayesian inference based on Wilson statistics. 2022. Computer Methods and Programs in B..." current
• 09:0209:02, 10 January 2023 diff hist +120 Main Page →Sharpening of high resolution information