User contributions for WikiSysop

12 July 2024

• 06:0406:04, 12 July 2024 diff hist +101 Main Page →Filament picking
• 05:4705:47, 12 July 2024 diff hist +1,671 N 2023Terwilliger AlphaFold Created page with "== Citation == Terwilliger, Thomas C. / Liebschner, Dorothee / Croll, Tristan I. / Williams, Christopher J. / McCoy, Airlie J. / Poon, Billy K. / Afonine, Pavel V. / Oeffner, Robert D. / Richardson, Jane S. / Read, Randy J. / others. AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination. 2024. Nature Methods, Vol. 21, No. 1, p. 110-116 == Abstract == Artificial intelligence-based protein structure predict..." current
• 05:4305:43, 12 July 2024 diff hist +117 Main Page →Fitting and docking

11 July 2024

• 16:2216:22, 11 July 2024 diff hist +1,424 N 2023McMullan 100kV Created page with "== Citation == McMullan, Greg / Naydenova, Katerina / Mihaylov, Daniel / Yamashita, Keitaro / Peet, Mathew J. / Wilson, Hugh / Dickerson, Joshua L. / Chen, Shaoxia / Cannone, Giuseppe / Lee, Yang / others. Structure determination by cryoEM at 100 keV. 2023. Proc. Natl. Acad. Sci. USA , Vol. 120, No. 49, p. e2312905120 == Abstract == Electron cryomicroscopy can, in principle, determine the structures of most biological molecules but is currently limited by access, spec..." current
• 16:2116:21, 11 July 2024 diff hist +56 Main Page →Image formation
• 16:1416:14, 11 July 2024 diff hist +2,214 N 2024Herre Capsules Created page with "== Citation == Herre, Carol / Ho, Alex / Eisenbraun, Ben / Vincent, James / Nicholson, Thomas / Boutsioukis, Giorgos / Meyer, Peter A. / Ottaviano, Michelle / Krause, Kurt L. / Key, Jason / Sliz, Piotr. Introduction of the Capsules environment to support further growth of the SBGrid structural biology software collection. 2024-06. Acta crystallographica. Section D, Structural biology, Vol. 80, p. 439-450 == Abstract == The expansive scientific software ecosystem, char..." current
• 16:1116:11, 11 July 2024 diff hist +103 Main Page →Software

20 June 2024

• 17:0517:05, 20 June 2024 diff hist +66 Main Page →Online courses and Learning material

19 January 2024

• 07:4507:45, 19 January 2024 diff hist +885 N 2024Chen Focused Created page with "== Citation == Chen, Muyuan / Schmid, Michael F. / Chiu, Wah. Improving resolution and resolvability of single-particle cryoEM structures using Gaussian mixture models. 2024...." current
• 07:4307:43, 19 January 2024 diff hist +93 Main Page →3D Heterogeneity

17 January 2024

• 09:1609:16, 17 January 2024 diff hist +1,501 N 2024Verbeke SelfFSC Created page with "== Citation == Verbeke, E. J. / Gilles, M. A. / Singer, A. Self Fourier shell correlation: properties and application to cryo-ET. 2024. Communications Biology, Vol. 7, p. 101..." current
• 09:1509:15, 17 January 2024 diff hist +73 Main Page →Validation

15 January 2024

• 08:4008:40, 15 January 2024 diff hist +1,981 N 2024Vuillemot MDSPACE Created page with "== Citation == Vuillemot, Rémi / Harastani, Mohamad / Hamitouche, Ilyes / Jonic, Slavica. MDSPACE and MDTOMO Software for Extracting Continuous Conformational Landscapes fro..." current
• 08:3908:39, 15 January 2024 diff hist +98 Main Page →Software

12 January 2024

• 08:2508:25, 12 January 2024 diff hist +1,089 N 2023Ochner Review Created page with "== Citation == Ochner, Hannah / Bharat, Tanmay A. M. Charting the molecular landscape of the cell. 2023. Structure, Vol. 31, No. 11, p. 1297-1305 == Abstract == Biological..." current
• 08:2408:24, 12 January 2024 diff hist +134 Main Page →Books and reviews
• 08:1108:11, 12 January 2024 diff hist +1,693 N 2023Liu NextPYP Created page with "== Citation == Liu, Hsuan-Fu / Zhou, Ye / Huang, Qinwen / Piland, Jonathan / Jin, Weisheng / Mandel, Justin / Du, Xiaochen / Martin, Jeffrey / Bartesaghi, Alberto. nextPYP: a..." current
• 08:1008:10, 12 January 2024 diff hist +77 Main Page →Software
• 08:0208:02, 12 January 2024 diff hist +1,584 N 2023Luo OpusDSD Created page with "== Citation == Luo, Zhenwei / Ni, Fengyun / Wang, Qinghua / Ma, Jianpeng. OPUS-DSD: deep structural disentanglement for cryo-EM single-particle analysis. 2023. Nature Methods..." current
• 08:0108:01, 12 January 2024 diff hist +101 Main Page →3D Heterogeneity

10 January 2024

• 08:1208:12, 10 January 2024 diff hist −11 2023Terashi DeepMainMast No edit summary current
• 08:0508:05, 10 January 2024 diff hist +1,331 N 2023Terashi DeepMainMast Created page with "== Citation == Cheng, Yuanhao / Huang, Xiaojun / Xu, Bin / Ding, Wei. AutoEMage: automatic data transfer, preprocessing, real-time display and monitoring in cryo-EM. 2023. J...."
• 08:0508:05, 10 January 2024 diff hist +93 Main Page →Fitting and docking
• 08:0008:00, 10 January 2024 diff hist +1,333 N 2023Cheng AutoEMage Created page with "== Citation == Cheng, Yuanhao / Huang, Xiaojun / Xu, Bin / Ding, Wei. AutoEMage: automatic data transfer, preprocessing, real-time display and monitoring in cryo-EM. 2023. J...." current
• 07:5707:57, 10 January 2024 diff hist +95 Main Page →Software
• 07:5107:51, 10 January 2024 diff hist +1,797 N 2023Zhao Review Created page with "== Citation == Zhao, Cuicui / Lu, Da / Zhao, Qian / Ren, Chongjiao / Zhang, Huangtao / Zhai, Jiaqi / Gou, Jiaxin / Zhu, Shilin / Zhang, Yaqi / Gong, Xinqi. Computational meth..." current
• 07:5007:50, 10 January 2024 diff hist +93 Main Page →Books and reviews
• 07:4507:45, 10 January 2024 diff hist +1,981 N 2023Krieger ScipionPrody Created page with "== Citation == Krieger, James M. / Sorzano, Carlos Oscar S. / Carazo, Jose Maria. Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Work..." current
• 07:4207:42, 10 January 2024 diff hist +122 Main Page →Software
• 07:4107:41, 10 January 2024 diff hist +1 Main Page →Fitting and docking

9 January 2024

• 08:5108:51, 9 January 2024 diff hist +818 N 2023Bai Challenges Created page with "== Citation == Bai, Xiao-chen / Gonen, Tamir / Gronenborn, Angela M. / Perrakis, Anastassis / Thorn, Andrea / Yang, Jianyi. Challenges and opportunities in macromolecular str..." current
• 08:5008:50, 9 January 2024 diff hist +95 Main Page →Books and reviews
• 08:3308:33, 9 January 2024 diff hist +1,730 N 2023Balyschew TomoBEAR Created page with "== Citation == Balyschew, Nikita / Yushkevich, Artsemi / Mikirtumov, Vasilii / Sanchez, Ricardo M. / Sprink, Thiemo / Kudryashev, Mikhail. Streamlined structure determination..." current
• 08:3108:31, 9 January 2024 diff hist +117 Main Page →Subtomogram analysis
• 08:2808:28, 9 January 2024 diff hist +1,495 N 2023Wang CryoREAD Created page with "== Citation == Wang, Xiao / Terashi, Genki / Kihara, Daisuke. CryoREAD: De novo structure modeling for nucleic acids in cryo-EM maps using deep learning. 2023. Nature Methods..." current
• 08:2508:25, 9 January 2024 diff hist +84 Main Page →Fitting and docking

8 January 2024

• 07:3007:30, 8 January 2024 diff hist +1,367 N 2023Strelak MovieAlignment Created page with "== Citation == Střelák, David / Marchán, Daniel / Carazo, José Mar\ia / S. Sorzano, Carlos O. Performance and Quality Comparison of Movie Alignment Software for Cryogenic..." current
• 07:2807:28, 8 January 2024 diff hist +87 Main Page →2D Preprocessing
• 07:2607:26, 8 January 2024 diff hist +2,072 N 2023Fernandez Subtraction Created page with "== Citation == Fernandez-Gimenez, Estrella / Mart\inez, M. M. / Marabini, R. / Strelak, D. / Sánchez-Garc\ia, R. / Carazo, J. M. / Sorzano, C. O. S. A new algorithm for part..." current
• 07:2507:25, 8 January 2024 diff hist +119 Main Page →3D Heterogeneity
• 07:2107:21, 8 January 2024 diff hist +1,450 N 2023Cheng GisSPA Created page with "== Citation == Cheng, Jing / Liu, Tong / You, Xin / Zhang, Fa / Sui, Sen-Fang / Wan, Xiaohua / Zhang, Xinzheng. Determining protein structures in cellular lamella at pseudo-a..." current
• 07:2107:21, 8 January 2024 diff hist +84 Main Page →Subtomogram analysis
• 07:1107:11, 8 January 2024 diff hist +1,463 N 2021Cheng Native Created page with "== Citation == Cheng, Jing / Li, Bufan / Si, Long / Zhang, Xinzheng. Determining structures in a native environment using single-particle cryoelectron microscopy images. 2021..." current
• 07:1007:10, 8 January 2024 diff hist +79 Main Page →Subtomogram analysis

5 January 2024

• 08:2308:23, 5 January 2024 diff hist +1,912 N 2023Basanta Graphene Created page with "== Citation == Basanta, Benjamin / Chen, Wenqian / Pride, Daniel E. / Lander, Gabriel C. Fabrication of Monolayer Graphene-Coated Grids forCryoelectron Microscopy. 2023. JoVE..." current
• 08:2208:22, 5 January 2024 diff hist +89 Main Page →Sample preparation
• 08:0808:08, 5 January 2024 diff hist +1,201 N 2023Miyashita MD Created page with "== Citation == Miyashita, Osamu / Tama, Florence. Advancing cryo-electron microscopy data analysis through accelerated simulation-based flexible fitting approaches. 2023. Cur..." current
• 08:0608:06, 5 January 2024 diff hist +97 Main Page →Books and reviews

4 January 2024

• 08:0008:00, 4 January 2024 diff hist +2,121 N 2023Barchet Focused Created page with "== Citation == Barchet, Charles / Fréchin, Léo / Holvec, Samuel / Hazemann, Isabelle / von Loeffelholz, Ottilie / Klaholz, Bruno P. Focused classifications and refinements..." current
• 07:5907:59, 4 January 2024 diff hist +110 Main Page →3D Heterogeneity