User contributions
From 3DEM-Methods
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- 09:22, 8 January 2021 (diff | hist) . . (+92) . . Main Page (→Missing-wedge correction)
- 10:37, 5 January 2021 (diff | hist) . . (+1,490) . . N 2020Chung Prepro (Created page with "== Citation == Chung, S.-C.; Lin, H.-H.; Niu, P.-Y.; Huang, S.-H.; Tu, I.-P. & Chang, W.-H. Pre-pro is a fast pre-processor for single-particle cryo-EM by enhancing 2D cl...") (current)
- 10:36, 5 January 2021 (diff | hist) . . (+86) . . Main Page (→2D Preprocessing)
- 09:51, 5 January 2021 (diff | hist) . . (+1,345) . . N 2020Beckers Permutation (Created page with "== Citation == Beckers, M.; Sachse, C. Permutation testing of Fourier shell correlation for resolution estimation of cryo-EM maps. J. Structural Biology, 2020, 212, 107579...")
- 09:47, 5 January 2021 (diff | hist) . . (+75) . . Main Page (→Resolution)
- 08:40, 5 January 2021 (diff | hist) . . (-1) . . 2020Penczek mFSC (current)
- 08:39, 5 January 2021 (diff | hist) . . (+1,720) . . N 2020Penczek mFSC (Created page with "== Citation == Penczek, P. A. Reliable cryo-EM resolution estimation with modified Fourier shell correlation. IUCrJ, 2020, 7 == Abstract == A modified Fourier shell correl...")
- 08:34, 5 January 2021 (diff | hist) . . (+83) . . Main Page (→Resolution)
- 07:38, 5 January 2021 (diff | hist) . . (+1,548) . . N 2020Punjani NonUniform (Created page with "== Citation == Punjani, A.; Zhang, H.; Fleet, D. J. Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstruction. Nature Methods, 2020, 17,...") (current)
- 07:37, 5 January 2021 (diff | hist) . . (+67) . . Main Page (→3D Reconstruction)
- 11:32, 25 December 2020 (diff | hist) . . (+94) . . Main Page (→Online courses and Learning material)
- 08:37, 26 October 2020 (diff | hist) . . (+1,778) . . N 2020Tichelaar Thick (Created page with "== Citation == Tichelaar, W.; Hagen, W. J. H.; Gorelik, T. E.; Xue, L.; Mahamid, J. TEM bright field imaging of thick specimens: nodes in Thon ring patterns. Ultramicroscopy,...") (current)
- 08:35, 26 October 2020 (diff | hist) . . (+206) . . Main Page (→Image formation)
- 14:05, 5 October 2020 (diff | hist) . . (+2,107) . . N 2020Gruza Atomic (Created page with "== Citation == Gruza, B.; Chodkiewicz, M. L.; Krzeszczakowska, J.; Dominiak, P. M. Refinement of organic crystal structures with multipolar electron scattering factors. Acta...") (current)
- 14:01, 5 October 2020 (diff | hist) . . (+109) . . Main Page (→Image formation)
- 08:46, 29 September 2020 (diff | hist) . . (-2) . . 2020Zhang LimitsSimulated (→Citation) (current)
- 08:45, 29 September 2020 (diff | hist) . . (+2,019) . . N 2020Zhang LimitsSimulated (Created page with "== Citation == Zhang, Y.; Tammaro, R.; Peters, P. J.; Ravelli, R. B. G. Could Egg White Lysozyme be Solved by Single Particle Cryo-EM? Journal of chemical information and mo...")
- 08:43, 29 September 2020 (diff | hist) . . (+127) . . Main Page (→Image formation)
- 07:10, 29 September 2020 (diff | hist) . . (+1,477) . . N 2020Sorzano automatic (Created page with "== Citation == Sorzano, C. O. S.; de Isidro-Gómez, F.; Fernández-Giménez, E.; Herreros, D.; Marco, S.; Carazo, J. M.; Messaoudi, C. Improvements on marker-free images alig...") (current)
- 07:09, 29 September 2020 (diff | hist) . . (+107) . . Main Page (→Image alignment)
- 08:06, 20 August 2020 (diff | hist) . . (+1,727) . . N 2020Klebl Deposition (Created page with "== Citation == Klebl, D. P.; Monteiro, D. C. F.; Kontziampasis, D.; Kopf, F.; Sobott, F.; White, H. D.; Trebbin, M.; Muench, S. P. Sample deposition onto cryo-EM grids: from...") (current)
- 08:05, 20 August 2020 (diff | hist) . . (+94) . . Main Page (→Sample preparation)
- 09:11, 19 August 2020 (diff | hist) . . (+1,456) . . N 2020Lederman representation (Created page with "== Citation == Lederman, R. R.; Singer, A. A representation theory perspective on simultaneous alignment and classification. Applied and Computational Harmonic Analysis, 2020...") (current)
- 09:07, 19 August 2020 (diff | hist) . . (+117) . . Main Page (→2D Alignment)
- 11:06, 14 August 2020 (diff | hist) . . (+1,423) . . N 2020Sanchez Hybrid (Created page with "== Citation == Sanchez, R. M.; Zhang, Y.; Chen, W.; Dietrich, L.; Kudryashev, M. Subnanometer-resolution structure determination in situ by hybrid subtomogram averaging - sin...") (current)
- 11:05, 14 August 2020 (diff | hist) . . (+160) . . Main Page (→3D reconstruction)
- 07:25, 13 August 2020 (diff | hist) . . (+2,169) . . N 2020Guo EER (Created page with "== Citation == Guo, H.; Franken, E.; Deng, Y.; Benlekbir, S.; Singla Lezcano, G.; Janssen, B.; Yu, L.; Ripstein, Z.; Tan, Y.; Rubinstein, J. Electron-event representation dat...") (current)
- 07:22, 13 August 2020 (diff | hist) . . (+79) . . Main Page (→Automated data collection)
- 06:53, 13 August 2020 (diff | hist) . . (+1,265) . . N 2020Weis Acquisition (Created page with "== Citation == Weis, F.; Hagen, W. J. H. Combining high throughput and high quality for cryo-electron microscopy data collection. Acta crystallographica. Section D, Structura...") (current)
- 06:52, 13 August 2020 (diff | hist) . . (+103) . . Main Page (→Automated data collection)
- 07:50, 12 August 2020 (diff | hist) . . (+1,213) . . N 2020Wu Review (Created page with "== Citation == Wu, M.; Lander, G. C. How low can we go? Structure determination of small biological complexes using single-particle cryo-EM. Current Opinion in Structural Bio...") (current)
- 07:47, 12 August 2020 (diff | hist) . . (+104) . . Main Page (→Books and reviews)
- 07:14, 12 August 2020 (diff | hist) . . (+1,907) . . N 2018Wu contrast (Created page with "== Citation == Wu, H.; Zhai, X.; Lei, D.; Liu, J.; Yu, Y.; Bie, R.; Ren, G. An Algorithm for Enhancing the Image Contrast of Electron Tomography. Scientific reports, 2018, 8,...") (current)
- 07:10, 12 August 2020 (diff | hist) . . (+82) . . Main Page (→Image preprocessing)
- 08:35, 11 August 2020 (diff | hist) . . (+1,883) . . N 2020Ortiz CrossValidation (Created page with "== Citation == Ortiz, S.; Stanisic, L.; Rodriguez, B. A.; Rampp, M.; Hummer, G.; Cossio, P. Validation tests for cryo-EM maps using an independent particle set. Journal of st...") (current)
- 08:34, 11 August 2020 (diff | hist) . . (+72) . . Main Page (→Validation)
- 07:16, 7 August 2020 (diff | hist) . . (+2,301) . . N 2020Dubach Review (Created page with "== Citation == Dubach, V. R.; Guskov, A. The Resolution in X-ray Crystallography and Single-Particle Cryogenic Electron Microscopy. Crystals, 2020, 10, 580 == Abstract ==...") (current)
- 07:15, 7 August 2020 (diff | hist) . . (+96) . . Main Page (→Books and reviews)
- 07:10, 7 August 2020 (diff | hist) . . (+1,675) . . N 2020Maeots TimeResolved (Created page with "== Citation == Mäeots, M.-E.; Lee, B.; Nans, A.; Jeong, S.-G.; Esfahani, M. M. N.; Ding, S.; Smith, D. J.; Lee, C.-S.; Lee, S. S.; Peter, M.; Enchev, R. I. Modular microflui...") (current)
- 07:08, 7 August 2020 (diff | hist) . . (+82) . . Main Page (→Sample preparation)
- 08:50, 5 August 2020 (diff | hist) . . (+102) . . Main Page (→Missing-wedge correction)
- 08:49, 5 August 2020 (diff | hist) . . (-102) . . Main Page (→Noise reduction)
- 08:36, 5 August 2020 (diff | hist) . . (+1,445) . . N 2020Kovacs Filaments (Created page with "== Citation == Kovacs, J.; Song, J.; Auer, M.; He, J.; Hunter, W.; Wriggers, W. Correction of Missing-Wedge Artifacts in Filamentous Tomograms by Template-Based Constrained D...") (current)
- 08:34, 5 August 2020 (diff | hist) . . (+102) . . Main Page (→Noise reduction)
- 07:15, 4 August 2020 (diff | hist) . . (+2,474) . . N 2020Vant Flexible (Created page with "== Citation == Vant, J. W.; Lahey, S.-L. J.; Jana, K.; Shekhar, M.; Sarkar, D.; Munk, B. H.; Kleinekathöfer, U.; Mittal, S.; Rowley, C.; Singharoy, A. Flexible Fitting of Sm...") (current)
- 07:14, 4 August 2020 (diff | hist) . . (+110) . . Main Page (→Fitting and docking)
- 06:57, 4 August 2020 (diff | hist) . . (+1,870) . . N 2020Tiwari PixelSize (Created page with "== Citation == Tiwari, S. P.; Chhabra, S.; Tama, F.; Miyashita, O. Computational Protocol for Assessing the Optimal Pixel Size to Improve the Accuracy of Single-particle Cryo...") (current)
- 06:55, 4 August 2020 (diff | hist) . . (+79) . . Main Page (→Validation)
- 11:33, 3 August 2020 (diff | hist) . . (+2,536) . . N 2020Schenk CryoFlare (Created page with "== Citation == Schenk, A. D.; Cavadini, S.; Thomä, N. H.; Genoud, C. Live Analysis and Reconstruction of Single-Particle Cryo-Electron Microscopy Data with CryoFLARE. Journa...") (current)
- 11:31, 3 August 2020 (diff | hist) . . (+80) . . Main Page (→Automated data collection)
- 11:26, 3 August 2020 (diff | hist) . . (-83) . . Main Page (→Validation)
- 11:24, 3 August 2020 (diff | hist) . . (+83) . . Main Page (→Validation)
- 11:12, 3 August 2020 (diff | hist) . . (-1) . . 2020Leelananda Constraints
- 11:12, 3 August 2020 (diff | hist) . . (+2,403) . . N 2020Leelananda Constraints (Created page with "== Citation == Article (Leelananda2020) Leelananda, S. P. & Lindert, S. Using NMR Chemical Shifts and Cryo-EM Density Restraints in Iterative Rosetta-MD Protein Structure R...")
- 11:11, 3 August 2020 (diff | hist) . . (+144) . . Main Page (→Fitting and docking)
- 07:39, 30 July 2020 (diff | hist) . . (+1,729) . . N 2020Akbar Review (Created page with "== Citation == Akbar, S.; Mozumder, S.; Sengupta, J. Retrospect and Prospect of Single Particle Cryo-Electron Microscopy: The Class of Integral Membrane Proteins as an Exampl...") (current)
- 07:37, 30 July 2020 (diff | hist) . . (+100) . . Main Page (→Books and reviews)
- 07:33, 30 July 2020 (diff | hist) . . (+895) . . N 2020Abriata Review (Created page with "== Citation == Abriata, L. A.; Dal Peraro, M. Will Cryo-Electron Microscopy Shift the Current Paradigm in Protein Structure Prediction? Journal of chemical information and mo...") (current)
- 07:32, 30 July 2020 (diff | hist) . . (+71) . . Main Page (→Books and reviews)
- 07:29, 30 July 2020 (diff | hist) . . (-1) . . 2020Kim Review (current)
- 07:28, 30 July 2020 (diff | hist) . . (+806) . . N 2020Kim Review (Created page with "== Citation == Kim, D. N.; Gront, D.; Sanbonmatsu, K. Y. Practical Considerations for Atomistic Structure Modeling with Cryo-EM Maps. Journal of chemical information and mode...")
- 07:27, 30 July 2020 (diff | hist) . . (+79) . . Main Page (→Fitting and docking)
- 01:25, 28 July 2020 (diff | hist) . . (+968) . . N 2020McCafferty Review (Created page with "== Citation == McCafferty, C. L.; Verbeke, E. J.; Marcotte, E. M.; Taylor, D. W. Structural Biology in the Multi-Omics Era. Journal of chemical information and modeling, 2020...") (current)
- 01:23, 28 July 2020 (diff | hist) . . (+79) . . Main Page (→Books and reviews)
- 07:48, 27 July 2020 (diff | hist) . . (+1,058) . . N 2020Costa MDeNM (Created page with "== Citation == Costa, M. G. S.; Fagnen, C.; Vénien-Bryan, C.; Perahia, D. A New Strategy for Atomic Flexible Fitting in Cryo-EM Maps by Molecular Dynamics with Excited Norma...") (current)
- 07:47, 27 July 2020 (diff | hist) . . (+95) . . Main Page (→Fitting and docking)
- 07:43, 27 July 2020 (diff | hist) . . (+1,237) . . N 2020Cossio CrossValidation (Created page with "== Citation == Cossio, P. Need for Cross-Validation of Single Particle Cryo-EM. Journal of chemical information and modeling, 2020, 60, 2413-2418 == Abstract == Cross-vali...") (current)
- 07:42, 27 July 2020 (diff | hist) . . (+74) . . Main Page (→Validation)
- 07:18, 24 July 2020 (diff | hist) . . (+1,143) . . N 2020Hoh Buccaneer (Created page with "== Citation == Hoh, S. W.; Burnley, T.; Cowtan, K. Current approaches for automated model building into cryo-EM maps using Buccaneer with CCP-EM. Acta crystallographica. Sect...") (current)
- 07:16, 24 July 2020 (diff | hist) . . (+75) . . Main Page (→Fitting and docking)
- 07:07, 24 July 2020 (diff | hist) . . (+1,622) . . N 2019Beckers FDR (Created page with "== Citation == Beckers, M.; Jakobi, A. J.; Sachse, C. Thresholding of cryo-EM density maps by false discovery rate control. IUCrJ, 2019, 6, 18-33 == Abstract == Cryo-EM no...") (current)
- 07:06, 24 July 2020 (diff | hist) . . (+97) . . Main Page (→Segmentation)
- 07:04, 24 July 2020 (diff | hist) . . (+1,244) . . N 2020Beckers FDR (Created page with "== Citation == Beckers, M.; Palmer, C. M.; Sachse, C. Confidence maps: statistical inference of cryo-EM maps. Acta crystallographica. Section D, Structural biology, 2020, 76,...") (current)
- 07:01, 24 July 2020 (diff | hist) . . (+93) . . Main Page (→Segmentation)
- 10:21, 20 July 2020 (diff | hist) . . (+1,708) . . N 2020Zhong CryoDRGN (Created page with "== Citation == Zhong, E. D.; Bepler, T.; Davis, J. H.; Berger, B. Reconstructing continuous distributions of 3D protein structure from cryo-EM images. Proc. Intl. Conf. on Le...") (current)
- 10:19, 20 July 2020 (diff | hist) . . (+99) . . Main Page (→3D Heterogeneity)
- 09:57, 20 July 2020 (diff | hist) . . (+2,025) . . N 2020Chen Atomic (Created page with "== Citation == Chen, L.; He, J. Outlier Profiles of Atomic Structures Derived from X-ray Crystallography and from Cryo-Electron Microscopy. Molecules, 2020, 25 == Abstract =...") (current)
- 09:56, 20 July 2020 (diff | hist) . . (+89) . . Main Page (→Validation)
- 09:46, 20 July 2020 (diff | hist) . . (+1,154) . . N 2019Schorb ET (Created page with "== Citation == Schorb, M.; Haberbosch, I.; Hagen, W. J. H.; Schwab, Y. & Mastronarde, D. N. Software tools for automated transmission electron microscopy. Nature methods,...") (current)
- 09:45, 20 July 2020 (diff | hist) . . (+80) . . Main Page (→Automated data collection)
- 08:17, 20 July 2020 (diff | hist) . . (+2,002) . . N 2020Sader Facility (Created page with "== Citation == Sader, K.; Matadeen, R.; Castro Hartmann, P.; Halsan, T.; Schlichten, C. Industrial cryo-EM facility setup and management. Acta crystallographica. Section D, S...") (current)
- 08:16, 20 July 2020 (diff | hist) . . (+92) . . Main Page (→Automated data collection)
- 07:53, 16 July 2020 (diff | hist) . . (+1,758) . . N 2020Maji Propagation (Created page with "== Citation == Maji, S.; Liao, H.; Dashti, A.; Mashayekhi, G.; Ourmazd, A.; Frank, J. Propagation of Conformational Coordinates Across Angular Space in Mapping the Continuum...") (current)
- 07:52, 16 July 2020 (diff | hist) . . (+105) . . Main Page (→3D Heterogeneity)
- 07:37, 16 July 2020 (diff | hist) . . (+1,531) . . N 2020Zhou AutomaticSelection (Created page with "== Citation == Zhou, Y.; Moscovich, A.; Bendory, T. & Bartesaghi, A. Unsupervised particle sorting for high-resolution single-particle cryo-EM. Inverse problems, 2020, 36...") (current)
- 07:36, 16 July 2020 (diff | hist) . . (+106) . . Main Page (→3D Reconstruction)
- 07:22, 16 July 2020 (diff | hist) . . (+1,458) . . N 2020Dodd ModelBuilding (Created page with "== Citation == Dodd, T.; Yan, C.; Ivanov, I. Simulation-Based Methods for Model Building and Refinement in Cryoelectron Microscopy. Journal of chemical information and modeli...") (current)
- 07:20, 16 July 2020 (diff | hist) . . (+116) . . Main Page (→Fitting and docking)
- 17:24, 15 July 2020 (diff | hist) . . (+1,462) . . N 2020Terashi MainMastSeg (Created page with "== Citation == Terashi, G.; Kagaya, Y. ; Kihara, D. MAINMASTseg: Automated Map Segmentation Method for Cryo-EM Density Maps with Symmetry. Journal of chemical information and...") (current)
- 17:23, 15 July 2020 (diff | hist) . . (+83) . . Main Page (→Segmentation)
- 09:17, 15 July 2020 (diff | hist) . . (+1,000) . . N 2020Zivanov HighOrder (Created page with "== Citation == Zivanov, J.; Nakane, T., Scheres, S. H. W. Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in Relion-3.1. IUCrJ, 2020...") (current)
- 09:15, 15 July 2020 (diff | hist) . . (+80) . . Main Page (→CTF estimation and restoration)
- 09:06, 15 July 2020 (diff | hist) . . (+1,491) . . N 2020Ramlaul Sidesplitter (Created page with "== Citation == Ramlaul, K.; Palmer, C. M.; Nakane, T., Aylett, C. H. S. Mitigating local over-fitting during single particle reconstruction with SIDESPLITTER. Journal of stru...") (current)
- 09:05, 15 July 2020 (diff | hist) . . (+98) . . Main Page (→3D Reconstruction)
- 08:55, 15 July 2020 (diff | hist) . . (+2,335) . . N 2020Xie Automatic (Created page with "== Citation == Xie, R.; Chen, Y.-X.; Cai, J.-M.; Yang, Y., Shen, H.-B. SPREAD: A Fully Automated Toolkit for Single-Particle Cryogenic Electron Microscopy Data 3D Reconstruct...") (current)
- 08:54, 15 July 2020 (diff | hist) . . (+84) . . Main Page (→3D Reconstruction)
- 07:23, 9 July 2020 (diff | hist) . . (+1,652) . . N 2020Miolane VAEGAN (Created page with "== Citation == Miolane, N.; Poitevin, F.; Li, Y.-T., Holmes, S. Estimation of orientation and camera parameters from cryo-electron microscopy images with variational autoenco...") (current)
- 07:22, 9 July 2020 (diff | hist) . . (+75) . . Main Page (→2D Classification and clustering)
- 07:11, 9 July 2020 (diff | hist) . . (+1,051) . . N 2020Marshall Invariants (Created page with "== Citation == Marshall, N. F.; Lan, T.-Y.; Bendory, T., Singer, A. Image recovery from rotational and translational invariants. Proc. IEEE Intl. Conf. ICASSP, 2020, 5780-578...") (current)
- 07:10, 9 July 2020 (diff | hist) . . (+86) . . Main Page (→2D Alignment)
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