User contributions
From 3DEM-Methods
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- 07:03, 9 February 2021 (diff | hist) . . (+1) . . Main Page (→Segmentation)
- 07:02, 9 February 2021 (diff | hist) . . (+80) . . Main Page (→Segmentation)
- 07:58, 5 February 2021 (diff | hist) . . (+1,487) . . N 2021Sorzano Uneven (Created page with "== Citation == Sorzano, C.; Semchonok, D.; Lin, S.; Lo, Y.; Vilas, J.; Jiménez-Moreno, A.; Gragera, M.; Vacca, S.; Maluenda, D.; Mart\inez, M.; Ramírez-Aportela, E.;...") (current)
- 07:46, 5 February 2021 (diff | hist) . . (+95) . . Main Page (→3D Reconstruction)
- 08:44, 3 February 2021 (diff | hist) . . (+1,542) . . N 2020Heimowitz Aspire (Created page with "== Citation == Heimowitz, A.; Andén, J.; Singer, A. Reducing bias and variance for CTF estimation in single particle cryo-EM. Ultramicroscopy, 2020, 212, 112950 == Abstrac...") (current)
- 08:43, 3 February 2021 (diff | hist) . . (+70) . . Main Page (→CTF estimation and restoration)
- 08:32, 3 February 2021 (diff | hist) . . (+1,282) . . N 2020Pan TV (Created page with "== Citation == Pan, H.; Wen, Y.-W.; Zeng, T. Constrained Total Variation Based Three-Dimension Single Particle Reconstruction in Cryogenic Electron Microscopy. Journal of Sci...") (current)
- 08:31, 3 February 2021 (diff | hist) . . (+86) . . Main Page (→3D Reconstruction)
- 08:25, 3 February 2021 (diff | hist) . . (-2) . . 2020Lai Statistics (current)
- 08:24, 3 February 2021 (diff | hist) . . (+1,215) . . N 2020Lai Statistics (Created page with "== Citation == Lai, T. L.; Wang, S.-H.; Yao, Y.-C.; Chung, S.-C.; Chang, W.-H.; Tu, I.-P. Cryo-EM: breakthroughs in chemistry, structural biology, and statistical underpinnin...")
- 08:22, 3 February 2021 (diff | hist) . . (+97) . . Main Page (→Books and reviews)
- 08:03, 2 February 2021 (diff | hist) . . (+1,402) . . N 2021Luo Opus (Created page with "== Citation == Luo, Z.; Campos-Acevedo, A. A.; Lv, L.; Wang, Q.; Ma, J. Sparseness and Smoothness Regularized Imaging for improving the resolution of Cryo-EM single-particle...") (current)
- 08:00, 2 February 2021 (diff | hist) . . (+92) . . Main Page (→3D Reconstruction)
- 09:37, 28 January 2021 (diff | hist) . . (+2,160) . . N 2020Seffernick Hybrid (Created page with "== Citation == Seffernick, J. T.; Lindert, S. Hybrid methods for combined experimental and computational determination of protein structure. The Journal of chemical physics,...") (current)
- 09:33, 28 January 2021 (diff | hist) . . (+126) . . Main Page (→Books and reviews)
- 07:43, 28 January 2021 (diff | hist) . . (+1,904) . . N 2020Yip Atomic (Created page with "== Citation == Yip, K. M.; Fischer, N.; Paknia, E.; Chari, A.; Stark, H. Atomic-resolution protein structure determination by cryo-EM. Nature, 2020, 587, 157-161 == Abstrac...") (current)
- 07:40, 28 January 2021 (diff | hist) . . (+126) . . Main Page (→Image formation)
- 08:22, 27 January 2021 (diff | hist) . . (+2,772) . . N 2020Alazzawi Auto (Created page with "== Citation == Al-Azzawi, A.; Ouadou, A.; Duan, Y.; Cheng, J. Auto3DCryoMap: an automated particle alignment approach for 3D cryo-EM density map reconstruction. BMC bioinform...") (current)
- 08:19, 27 January 2021 (diff | hist) . . (+110) . . Main Page (→3D Reconstruction)
- 07:11, 25 January 2021 (diff | hist) . . (+846) . . N 2020Cragnolini Tempy2 (Created page with "== Citation == Cragnolini, T.; Sahota, H.; Joseph, A. P.; Sweeney, A.; Malhotra, S.; Vasishtan, D.; Topf, M. TEMPy2: a Python library with improved 3D electron microscopy den...") (current)
- 06:59, 25 January 2021 (diff | hist) . . (+93) . . Main Page (→Fitting and docking)
- 16:31, 15 January 2021 (diff | hist) . . (+1,643) . . N 2021Kimanius PriorKnowledge (Created page with "== Citation == Kimanius, D.; Zickert, G.; Nakane, T.; Adler, J.; Lunz, S.; Schonlieb, C.-B.; Oktem, O.; Scheres, S. Exploiting prior knowledge about biological macromolecules...") (current)
- 16:30, 15 January 2021 (diff | hist) . . (+107) . . Main Page (→3D Reconstruction)
- 16:17, 15 January 2021 (diff | hist) . . (+1,831) . . N 2020Liebschner Ceres (Created page with "== Citation == Liebschner, D.; Afonine, P. V.; Moriarty, N. W.; Poon, B. K.; Chen, V. B.; Adams, P. D. CERES: a cryo-EM re-refinement system for continuous improvement of dep...") (current)
- 16:15, 15 January 2021 (diff | hist) . . (+118) . . Main Page (→Fitting and docking)
- 15:06, 13 January 2021 (diff | hist) . . (+374) . . N 2020Basanta workflow (Created page with "== Citation == Basanta, B.; Chowdhury, S.; Lander, G. C.; Grotjahn, D. A. A guided approach for subtomogram averaging of challenging macromolecular assemblies. Journal of str...") (current)
- 14:53, 13 January 2021 (diff | hist) . . (+77) . . Main Page (→Resolution)
- 14:53, 13 January 2021 (diff | hist) . . (-1) . . Main Page (→Subtomogram analysis)
- 14:32, 13 January 2021 (diff | hist) . . (+1,578) . . N 2020Vilas Monotomo (Created page with "== Citation == Vilas, J.; Oton, J.; Messaoudi, C.; Melero, R.; Conesa, P.; Ramirez-Aportela, E.; Mota, J.; Martinez, M.; Jimenez, A.; Marabini, R.; J.M. Carazo; J. Vargas; C....") (current)
- 14:27, 13 January 2021 (diff | hist) . . (+77) . . Main Page (→Subtomogram analysis)
- 14:23, 13 January 2021 (diff | hist) . . (+1,268) . . N 2019Subramaniya DeepSSE (Created page with "== Citation == Subramaniya, R.; Terashi, G.; Kihara, D. Protein secondary structure detection in intermediate-resolution cryo-EM maps using deep learning. Nature methods, 201...") (current)
- 14:21, 13 January 2021 (diff | hist) . . (+106) . . Main Page (→Fitting and docking)
- 14:01, 13 January 2021 (diff | hist) . . (-46) . . 2020Huang SuperResolution (→Abstract) (current)
- 13:58, 13 January 2021 (diff | hist) . . (+1,764) . . N 2020Huang SuperResolution (Created page with "== Citation == Huang, Q.; Zhou, Y.; Du, X.; Chen, R.; Wang, J.; Rudin, C.; Bartesaghi, A. Cryo-ZSSR: multiple-image super-resolution basedon deep internal learning. Proc. 34t...")
- 13:57, 13 January 2021 (diff | hist) . . (+104) . . Main Page (→2D Preprocessing)
- 11:55, 13 January 2021 (diff | hist) . . (+1,339) . . N 2021Saltzberg IMP (Created page with "== Citation == Saltzberg, D. J.; Viswanath, S.; Echeverria, I.; Chemmama, I. E.; Webb, B.; Sali, A. Using Integrative Modeling Platform to compute, validate, and archive a mo...") (current)
- 11:54, 13 January 2021 (diff | hist) . . (+101) . . Main Page (→Fitting and docking)
- 13:00, 11 January 2021 (diff | hist) . . (+1,584) . . 2020Palovcak noise2noise (current)
- 12:59, 11 January 2021 (diff | hist) . . (+124) . . N 2020Palovcak noise2noise (Created page with "== Citation == == Abstract == == Keywords == == Links == == Related software == == Related methods == == Comments ==")
- 12:58, 11 January 2021 (diff | hist) . . (+83) . . Main Page (→2D Preprocessing)
- 12:33, 11 January 2021 (diff | hist) . . (+2,339) . . N 2020Xie Network (Created page with "== Citation == Xie, R.; Chen, Y.-X.; Cai, J.-M.; Yang, Y.; Shen, H.-B. SPREAD: A Fully Automated Toolkit for Single-Particle Cryogenic Electron Microscopy Data 3D Reconstruct...") (current)
- 12:32, 11 January 2021 (diff | hist) . . (+93) . . Main Page (→3D Alignment)
- 10:40, 8 January 2021 (diff | hist) . . (+1,788) . . N 2019Rubinstein ultrasonic (Created page with "== Citation == Rubinstein, J. L.; Guo, H.; Ripstein, Z. A.; Haydaroglu, A.; Au, A.; Yip, C. M.; Di Trani, J. M.; Benlekbir, S.; Kwok, T. Shake-it-off: a simple ultrasonic cry...") (current)
- 10:39, 8 January 2021 (diff | hist) . . (+85) . . Main Page (→Sample preparation)
- 10:30, 8 January 2021 (diff | hist) . . (+1,186) . . N 2020Naydenova Buckling (Created page with "== Citation == Naydenova, K.; Jia, P.; Russo, C. J. Cryo-EM with sub-1 Å specimen movement. Science, 2020, 370, 223-226 == Abstract == Most information loss in cryogenic...") (current)
- 10:29, 8 January 2021 (diff | hist) . . (+92) . . Main Page (→Image formation)
- 10:08, 8 January 2021 (diff | hist) . . (+1,712) . . N 2020Terwilliger density (Created page with "== Citation == Terwilliger, T. C.; Sobolev, O. V.; Afonine, P. V.; Adams, P. D.; Read, R. J. Density modification of cryo-EM maps. Acta crystallographica. Section D, Structur...") (current)
- 10:06, 8 January 2021 (diff | hist) . . (+81) . . Main Page (→Sharpening of high resolution information)
- 09:46, 8 January 2021 (diff | hist) . . (+1,943) . . N 2020Caesar Simple3 (Created page with "== Citation == Caesar, J.; Reboul, C. F.; Machello, C.; Kiesewetter, S.; Tang, M. L.; Deme, J. C.; Johnson, S.; Elmlund, D.; Lea, S. M.; Elmlund, H. SIMPLE 3.0. Stream single...") (current)
- 09:45, 8 January 2021 (diff | hist) . . (+49) . . Main Page (→Software)
- 09:23, 8 January 2021 (diff | hist) . . (+1,407) . . N 2020Moebel MCMC (Created page with "== Citation == Moebel, E., Kervrann, C. A Monte Carlo framework for missing wedge restoration and noise removal in cryo-electron tomography. Journal of Structural Biology: X,...") (current)
- 09:22, 8 January 2021 (diff | hist) . . (+92) . . Main Page (→Missing-wedge correction)
- 10:37, 5 January 2021 (diff | hist) . . (+1,490) . . N 2020Chung Prepro (Created page with "== Citation == Chung, S.-C.; Lin, H.-H.; Niu, P.-Y.; Huang, S.-H.; Tu, I.-P. & Chang, W.-H. Pre-pro is a fast pre-processor for single-particle cryo-EM by enhancing 2D cl...") (current)
- 10:36, 5 January 2021 (diff | hist) . . (+86) . . Main Page (→2D Preprocessing)
- 09:51, 5 January 2021 (diff | hist) . . (+1,345) . . N 2020Beckers Permutation (Created page with "== Citation == Beckers, M.; Sachse, C. Permutation testing of Fourier shell correlation for resolution estimation of cryo-EM maps. J. Structural Biology, 2020, 212, 107579...")
- 09:47, 5 January 2021 (diff | hist) . . (+75) . . Main Page (→Resolution)
- 08:40, 5 January 2021 (diff | hist) . . (-1) . . 2020Penczek mFSC (current)
- 08:39, 5 January 2021 (diff | hist) . . (+1,720) . . N 2020Penczek mFSC (Created page with "== Citation == Penczek, P. A. Reliable cryo-EM resolution estimation with modified Fourier shell correlation. IUCrJ, 2020, 7 == Abstract == A modified Fourier shell correl...")
- 08:34, 5 January 2021 (diff | hist) . . (+83) . . Main Page (→Resolution)
- 07:38, 5 January 2021 (diff | hist) . . (+1,548) . . N 2020Punjani NonUniform (Created page with "== Citation == Punjani, A.; Zhang, H.; Fleet, D. J. Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstruction. Nature Methods, 2020, 17,...") (current)
- 07:37, 5 January 2021 (diff | hist) . . (+67) . . Main Page (→3D Reconstruction)
- 11:32, 25 December 2020 (diff | hist) . . (+94) . . Main Page (→Online courses and Learning material)
- 08:37, 26 October 2020 (diff | hist) . . (+1,778) . . N 2020Tichelaar Thick (Created page with "== Citation == Tichelaar, W.; Hagen, W. J. H.; Gorelik, T. E.; Xue, L.; Mahamid, J. TEM bright field imaging of thick specimens: nodes in Thon ring patterns. Ultramicroscopy,...") (current)
- 08:35, 26 October 2020 (diff | hist) . . (+206) . . Main Page (→Image formation)
- 14:05, 5 October 2020 (diff | hist) . . (+2,107) . . N 2020Gruza Atomic (Created page with "== Citation == Gruza, B.; Chodkiewicz, M. L.; Krzeszczakowska, J.; Dominiak, P. M. Refinement of organic crystal structures with multipolar electron scattering factors. Acta...") (current)
- 14:01, 5 October 2020 (diff | hist) . . (+109) . . Main Page (→Image formation)
- 08:46, 29 September 2020 (diff | hist) . . (-2) . . 2020Zhang LimitsSimulated (→Citation) (current)
- 08:45, 29 September 2020 (diff | hist) . . (+2,019) . . N 2020Zhang LimitsSimulated (Created page with "== Citation == Zhang, Y.; Tammaro, R.; Peters, P. J.; Ravelli, R. B. G. Could Egg White Lysozyme be Solved by Single Particle Cryo-EM? Journal of chemical information and mo...")
- 08:43, 29 September 2020 (diff | hist) . . (+127) . . Main Page (→Image formation)
- 07:10, 29 September 2020 (diff | hist) . . (+1,477) . . N 2020Sorzano automatic (Created page with "== Citation == Sorzano, C. O. S.; de Isidro-Gómez, F.; Fernández-Giménez, E.; Herreros, D.; Marco, S.; Carazo, J. M.; Messaoudi, C. Improvements on marker-free images alig...") (current)
- 07:09, 29 September 2020 (diff | hist) . . (+107) . . Main Page (→Image alignment)
- 08:06, 20 August 2020 (diff | hist) . . (+1,727) . . N 2020Klebl Deposition (Created page with "== Citation == Klebl, D. P.; Monteiro, D. C. F.; Kontziampasis, D.; Kopf, F.; Sobott, F.; White, H. D.; Trebbin, M.; Muench, S. P. Sample deposition onto cryo-EM grids: from...") (current)
- 08:05, 20 August 2020 (diff | hist) . . (+94) . . Main Page (→Sample preparation)
- 09:11, 19 August 2020 (diff | hist) . . (+1,456) . . N 2020Lederman representation (Created page with "== Citation == Lederman, R. R.; Singer, A. A representation theory perspective on simultaneous alignment and classification. Applied and Computational Harmonic Analysis, 2020...") (current)
- 09:07, 19 August 2020 (diff | hist) . . (+117) . . Main Page (→2D Alignment)
- 11:06, 14 August 2020 (diff | hist) . . (+1,423) . . N 2020Sanchez Hybrid (Created page with "== Citation == Sanchez, R. M.; Zhang, Y.; Chen, W.; Dietrich, L.; Kudryashev, M. Subnanometer-resolution structure determination in situ by hybrid subtomogram averaging - sin...") (current)
- 11:05, 14 August 2020 (diff | hist) . . (+160) . . Main Page (→3D reconstruction)
- 07:25, 13 August 2020 (diff | hist) . . (+2,169) . . N 2020Guo EER (Created page with "== Citation == Guo, H.; Franken, E.; Deng, Y.; Benlekbir, S.; Singla Lezcano, G.; Janssen, B.; Yu, L.; Ripstein, Z.; Tan, Y.; Rubinstein, J. Electron-event representation dat...") (current)
- 07:22, 13 August 2020 (diff | hist) . . (+79) . . Main Page (→Automated data collection)
- 06:53, 13 August 2020 (diff | hist) . . (+1,265) . . N 2020Weis Acquisition (Created page with "== Citation == Weis, F.; Hagen, W. J. H. Combining high throughput and high quality for cryo-electron microscopy data collection. Acta crystallographica. Section D, Structura...") (current)
- 06:52, 13 August 2020 (diff | hist) . . (+103) . . Main Page (→Automated data collection)
- 07:50, 12 August 2020 (diff | hist) . . (+1,213) . . N 2020Wu Review (Created page with "== Citation == Wu, M.; Lander, G. C. How low can we go? Structure determination of small biological complexes using single-particle cryo-EM. Current Opinion in Structural Bio...") (current)
- 07:47, 12 August 2020 (diff | hist) . . (+104) . . Main Page (→Books and reviews)
- 07:14, 12 August 2020 (diff | hist) . . (+1,907) . . N 2018Wu contrast (Created page with "== Citation == Wu, H.; Zhai, X.; Lei, D.; Liu, J.; Yu, Y.; Bie, R.; Ren, G. An Algorithm for Enhancing the Image Contrast of Electron Tomography. Scientific reports, 2018, 8,...") (current)
- 07:10, 12 August 2020 (diff | hist) . . (+82) . . Main Page (→Image preprocessing)
- 08:35, 11 August 2020 (diff | hist) . . (+1,883) . . N 2020Ortiz CrossValidation (Created page with "== Citation == Ortiz, S.; Stanisic, L.; Rodriguez, B. A.; Rampp, M.; Hummer, G.; Cossio, P. Validation tests for cryo-EM maps using an independent particle set. Journal of st...") (current)
- 08:34, 11 August 2020 (diff | hist) . . (+72) . . Main Page (→Validation)
- 07:16, 7 August 2020 (diff | hist) . . (+2,301) . . N 2020Dubach Review (Created page with "== Citation == Dubach, V. R.; Guskov, A. The Resolution in X-ray Crystallography and Single-Particle Cryogenic Electron Microscopy. Crystals, 2020, 10, 580 == Abstract ==...") (current)
- 07:15, 7 August 2020 (diff | hist) . . (+96) . . Main Page (→Books and reviews)
- 07:10, 7 August 2020 (diff | hist) . . (+1,675) . . N 2020Maeots TimeResolved (Created page with "== Citation == Mäeots, M.-E.; Lee, B.; Nans, A.; Jeong, S.-G.; Esfahani, M. M. N.; Ding, S.; Smith, D. J.; Lee, C.-S.; Lee, S. S.; Peter, M.; Enchev, R. I. Modular microflui...") (current)
- 07:08, 7 August 2020 (diff | hist) . . (+82) . . Main Page (→Sample preparation)
- 08:50, 5 August 2020 (diff | hist) . . (+102) . . Main Page (→Missing-wedge correction)
- 08:49, 5 August 2020 (diff | hist) . . (-102) . . Main Page (→Noise reduction)
- 08:36, 5 August 2020 (diff | hist) . . (+1,445) . . N 2020Kovacs Filaments (Created page with "== Citation == Kovacs, J.; Song, J.; Auer, M.; He, J.; Hunter, W.; Wriggers, W. Correction of Missing-Wedge Artifacts in Filamentous Tomograms by Template-Based Constrained D...") (current)
- 08:34, 5 August 2020 (diff | hist) . . (+102) . . Main Page (→Noise reduction)
- 07:15, 4 August 2020 (diff | hist) . . (+2,474) . . N 2020Vant Flexible (Created page with "== Citation == Vant, J. W.; Lahey, S.-L. J.; Jana, K.; Shekhar, M.; Sarkar, D.; Munk, B. H.; Kleinekathöfer, U.; Mittal, S.; Rowley, C.; Singharoy, A. Flexible Fitting of Sm...") (current)
- 07:14, 4 August 2020 (diff | hist) . . (+110) . . Main Page (→Fitting and docking)
- 06:57, 4 August 2020 (diff | hist) . . (+1,870) . . N 2020Tiwari PixelSize (Created page with "== Citation == Tiwari, S. P.; Chhabra, S.; Tama, F.; Miyashita, O. Computational Protocol for Assessing the Optimal Pixel Size to Improve the Accuracy of Single-particle Cryo...") (current)
- 06:55, 4 August 2020 (diff | hist) . . (+79) . . Main Page (→Validation)
- 11:33, 3 August 2020 (diff | hist) . . (+2,536) . . N 2020Schenk CryoFlare (Created page with "== Citation == Schenk, A. D.; Cavadini, S.; Thomä, N. H.; Genoud, C. Live Analysis and Reconstruction of Single-Particle Cryo-Electron Microscopy Data with CryoFLARE. Journa...") (current)
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