User contributions for CoSS

30 April 2013

• 06:3906:39, 30 April 2013 diff hist +1,448 N 2012Yang ISAC Created page with "== Citation == Yang, Z.; Fang, J.; Chittuluru, J.; Asturias, F. J. & Penczek, P. A. Iterative stable alignment and clustering of 2D transmission electron microscope images. S..." current
• 06:3706:37, 30 April 2013 diff hist +77 Main Page →2D Classification and clustering

1 April 2013

• 15:1015:10, 1 April 2013 diff hist +1,652 N 1996Owen alignmentQuality Created page with "== Citation == Owen, C. H. & Landis, W. J. Alignment of electron tomographic series by correlation without the use of gold particles Ultramicroscopy, 1996, 63, 27-38 == Abst..." current
• 15:0915:09, 1 April 2013 diff hist +128 Main Page →Image alignment
• 15:0415:04, 1 April 2013 diff hist +1,530 N 2010Cantele dualAlignment Created page with "== Citation == Cantele, F.; Paccagnini, E.; Pigino, G.; Lupetti, P. & Lanzavecchia, S. Simultaneous alignment of dual-axis tilt series. J Struct Biol, 2010, 169, 192-199 == ..." current
• 15:0015:00, 1 April 2013 diff hist +72 Main Page →Image alignment
• 13:4713:47, 1 April 2013 diff hist +2,206 N 2006Ogura SimulatedAnnealing Created page with "== Citation == Ogura, T. & Sato, C. Posterior Euler angle assignment using simulated annealing J. Structural Biology, 2006, 156, 371-386 == Abstract == Single-particle anal..." current
• 13:4313:43, 1 April 2013 diff hist +91 Main Page →3D Alignment
• 13:4013:40, 1 April 2013 diff hist −1 Main Page →Image formation
• 13:4013:40, 1 April 2013 diff hist 0 m 2009Baxter NoiseCharacterization CoSS moved page 2009 Baxter NoiseCharacterization to 2009Baxter NoiseCharacterization current
• 13:3413:34, 1 April 2013 diff hist +1,003 N 2013Goris SIRT TV DART Created page with "== Citation == Goris, B.; Roelandts, T.; Batenburg, K. J.; Heidari Mezerji, H. & Bals, S. Advanced reconstruction algorithms for electron tomography: From comparison to combi..." current
• 13:3213:32, 1 April 2013 diff hist +142 Main Page →3D reconstruction
• 09:3309:33, 1 April 2013 diff hist +999 N 2013Egerton RadiationDamage Created page with "== Citation == Egerton, R. F. Control of radiation damage in the TEM. Ultramicroscopy, 2013, 127, 100-108 == Abstract == The problem of electron-beam damage in the transmis..." current
• 09:3109:31, 1 April 2013 diff hist +117 Main Page →Image formation

28 March 2013

• 21:4321:43, 28 March 2013 diff hist +1,322 N 2011Lawson EMDB Created page with "== Citation == Lawson, C. L.; Baker, M. L.; Best, C.; Bi, C.; Dougherty, M.; Feng, P.; van Ginkel null, G.; Devkota, B.; Lagerstedt, I.; Ludtke, S. J.; Newman, R. H.; Oldfiel..." current
• 21:4121:41, 28 March 2013 diff hist −1 Main Page →Data bases
• 21:4021:40, 28 March 2013 diff hist +1,670 N 2011Kim CDDB Created page with "== Citation == Kim, D.-N.; Altschuler, J.; Strong, C.; McGill, G. & Bathe, M. Conformational dynamics data bank: a database for conformational dynamics of proteins and supram..." current
• 21:3821:38, 28 March 2013 diff hist +222 Main Page →Data bases

8 March 2013

• 06:4206:42, 8 March 2013 diff hist +1,642 N 2007Yoshioka RCT Created page with "== Citation == Yoshioka C, Pulokas J, Fellmann D, Potter CS, Milligan RA, Carragher B. Automation of random conical tilt and orthogonal tilt data collection using feature-bas..." current
• 06:4106:41, 8 March 2013 diff hist +68 Main Page →Automated data collection

5 February 2013

• 08:0408:04, 5 February 2013 diff hist +626 N 1982Schiske Correction Created page with "== Citation == Schiske, P. A posteriori correction of object tilt for the CTEM. Ultramicroscopy, 1982, 9, 17-26 == Abstract == The imaging of tilted objects in a CTEM is tr..." current
• 08:0208:02, 5 February 2013 diff hist +78 Main Page →CTF estimation and restoration
• 07:5307:53, 5 February 2013 diff hist +308 N 1977Wade Model Created page with "== Citation == Wade, R. H. & Frank, J. Electron microscope transfer functions for partially coherent axial illumination and chromatic defocus spread. Optik, 1977, 49, 81-92 ..." current
• 07:5107:51, 5 February 2013 diff hist +46 Main Page →Image formation
• 07:5007:50, 5 February 2013 diff hist +310 N 1978Wade Model Created page with "== Citation == Wade, R. H. The phase contrast characteristics in bright field electron microscopy. Ultramicroscopy, 1978, 3, 329-334 == Abstract == == Keywords == CTF mode..." current
• 07:4507:45, 5 February 2013 diff hist +46 Main Page →Image formation
• 07:4407:44, 5 February 2013 diff hist +178 Main Page →Image formation
• 07:4307:43, 5 February 2013 diff hist −237 Main Page →CTF estimation and restoration
• 07:4007:40, 5 February 2013 diff hist +1,097 N 1992Wade Model Created page with "== Citation == Wade, R. H. A brief look at imaging and contrast transfer. Ultramicroscopy, 1992, 46, 145-156 == Abstract == The development of the basic notions of electron..." current
• 07:3807:38, 5 February 2013 diff hist +46 Main Page →CTF estimation and restoration

21 January 2013

• 13:0813:08, 21 January 2013 diff hist +1,444 N 2011Mariani Tilted Created page with "== Citation == Mariani V, Schenk AD, Philippsen A, Engel A. Simulation and correction of electron images of tilted planar weak-phase samples. J Struct Biol. 2011 May;174(2):2..." current
• 13:0613:06, 21 January 2013 diff hist +90 Main Page →CTF estimation and restoration

18 January 2013

• 07:1507:15, 18 January 2013 diff hist +1,485 N 2012Gopinath ShapeRegularization Created page with "== Citation == Gopinath A, Xu G, Ress D, Oktem O, Subramaniam S, Bajaj C. Shape-based regularization of electron tomographic reconstruction. IEEE Trans Med Imaging. 2012 Dec;..." current
• 07:1407:14, 18 January 2013 diff hist +105 Main Page →3D Reconstruction

16 January 2013

• 09:1309:13, 16 January 2013 diff hist −2 Main Page No edit summary
• 09:1309:13, 16 January 2013 diff hist +34 Main Page No edit summary

15 January 2013

• 11:0811:08, 15 January 2013 diff hist −4 Main Page →Image formation
• 11:0611:06, 15 January 2013 diff hist +39 N 2011Zhang2011 LimitingFactors CoSS moved page 2011Zhang2011 LimitingFactors to 2011Zhang LimitingFactors current
• 10:3010:30, 15 January 2013 diff hist +1,896 N 2003Sander MSA Created page with "== Citation == Sander, B.; Golas, M. M. & Stark, H. Automatic CTF correction for single particles based upon multivariate statistical analysis of individual power spectra J. ..." current
• 10:2810:28, 15 January 2013 diff hist +86 Main Page →CTF estimation and restoration
• 10:2510:25, 15 January 2013 diff hist +1,422 N 2010Jiang2010 CTFCorrection Created page with "== Citation == Jiang, L.; Liu, Z.; Georgieva, D.; Kuil, M. E. & Abrahams, J. P. A novel approximation method of CTF amplitude correction for 3D single particle reconstruction..." current
• 10:2410:24, 15 January 2013 diff hist +76 Main Page →CTF estimation and restoration
• 09:4909:49, 15 January 2013 diff hist +1,341 N 2012Voortman VaryingCTF Created page with "== Citation == Voortman LM, Franken EM, van Vliet LJ, Rieger B. Fast, spatially varying CTF correction in TEM. Ultramicroscopy. 2012 Jul;118:26-34. == Abstract == We have d..." current
• 09:4609:46, 15 January 2013 diff hist +81 Main Page →CTF estimation and restoration

3 January 2013

• 12:5112:51, 3 January 2013 diff hist +1,736 N 2013Wang MLVariance Created page with "== Citation == Wang Q, Matsui T, Domitrovic T, Zheng Y, Doerschuk PC, Johnson JE. Dynamics in cryo EM reconstructions visualized with maximum-likelihood derived variance maps..." current
• 12:4912:49, 3 January 2013 diff hist +89 Main Page →3D Heterogeneity

19 December 2012

• 07:0007:00, 19 December 2012 diff hist +1,548 N 2012Bartesaghi Constrained Created page with "== Citation == Bartesaghi, A.; Lecumberry, F.; Sapiro, G. & Subramaniam, S. Protein secondary structure determination by constrained single-particle cryo-electron tomography...." current
• 06:5906:59, 19 December 2012 diff hist +145 Main Page →Electron tomography

17 December 2012

• 10:3010:30, 17 December 2012 diff hist +1,806 N 2012Devaux Protocol Created page with "== Citation == Z. Devaux, C.O.S. Sorzano, S. Jonic. Processing of Transmission Electron Microscopy Images for Single-Particle Analysis of Macromolecular Complexes. In P. M. C..." current
• 10:2710:27, 17 December 2012 diff hist +93 Main Page →Books and reviews