User contributions for WikiSysop

15 July 2020

• 17:2417:24, 15 July 2020 diff hist +1,462 N 2020Terashi MainMastSeg Created page with "== Citation == Terashi, G.; Kagaya, Y. ; Kihara, D. MAINMASTseg: Automated Map Segmentation Method for Cryo-EM Density Maps with Symmetry. Journal of chemical information and..." current
• 17:2317:23, 15 July 2020 diff hist +83 Main Page →Segmentation
• 09:1709:17, 15 July 2020 diff hist +1,000 N 2020Zivanov HighOrder Created page with "== Citation == Zivanov, J.; Nakane, T., Scheres, S. H. W. Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in Relion-3.1. IUCrJ, 2020..." current
• 09:1509:15, 15 July 2020 diff hist +80 Main Page →CTF estimation and restoration
• 09:0609:06, 15 July 2020 diff hist +1,491 N 2020Ramlaul Sidesplitter Created page with "== Citation == Ramlaul, K.; Palmer, C. M.; Nakane, T., Aylett, C. H. S. Mitigating local over-fitting during single particle reconstruction with SIDESPLITTER. Journal of stru..." current
• 09:0509:05, 15 July 2020 diff hist +98 Main Page →3D Reconstruction
• 08:5508:55, 15 July 2020 diff hist +2,335 N 2020Xie Automatic Created page with "== Citation == Xie, R.; Chen, Y.-X.; Cai, J.-M.; Yang, Y., Shen, H.-B. SPREAD: A Fully Automated Toolkit for Single-Particle Cryogenic Electron Microscopy Data 3D Reconstruct..." current
• 08:5408:54, 15 July 2020 diff hist +84 Main Page →3D Reconstruction

9 July 2020

• 07:2307:23, 9 July 2020 diff hist +1,652 N 2020Miolane VAEGAN Created page with "== Citation == Miolane, N.; Poitevin, F.; Li, Y.-T., Holmes, S. Estimation of orientation and camera parameters from cryo-electron microscopy images with variational autoenco..." current
• 07:2207:22, 9 July 2020 diff hist +75 Main Page →2D Classification and clustering
• 07:1107:11, 9 July 2020 diff hist +1,051 N 2020Marshall Invariants Created page with "== Citation == Marshall, N. F.; Lan, T.-Y.; Bendory, T., Singer, A. Image recovery from rotational and translational invariants. Proc. IEEE Intl. Conf. ICASSP, 2020, 5780-578..." current
• 07:1007:10, 9 July 2020 diff hist +86 Main Page →2D Alignment

8 July 2020

• 07:5107:51, 8 July 2020 diff hist +105 Main Page →Online courses and Learning material
• 02:4602:46, 8 July 2020 diff hist +1,986 N 2014Penczek CTER Created page with "== Citation == Penczek, P. A. and Fang, J. and Li, X. and Cheng, Y. and Loerke, J. and Spahn, C. M. T. CTER-rapid Estimation of CTF Parameters With Error Assessment. Ultramic..." current
• 02:4402:44, 8 July 2020 diff hist +67 Main Page →CTF estimation and restoration

7 July 2020

• 09:5009:50, 7 July 2020 diff hist +1,290 N 2020Li Workflow Created page with "== Citation == Li, Y.; Cash, J. N.; Tesmer, J. J. G., Cianfrocco, M. A. High-Throughput Cryo-EM Enabled by User-Free Preprocessing Routines. Structure, 2020 == Abstract ==..." current
• 09:4809:48, 7 July 2020 diff hist +75 Main Page →Automated data collection
• 09:0009:00, 7 July 2020 diff hist +1,615 N 2020Vilas Review Created page with "== Citation == Vilas, JL, Heymann, JB, Tagare, H, Ramirez-Aportela, E, Carazo, JM, Sorzano, COS. Local resolution estimates of cryoEM reconstructions. Current Opinion in Stru..." current
• 08:5708:57, 7 July 2020 diff hist +65 Main Page →Books and reviews

6 July 2020

• 07:5407:54, 6 July 2020 diff hist +1,432 N 2020Strelak FlexAlign Created page with "== Citation == Strelak, D.; Filipovic, J.; Jiménez-Moreno, A.; Carazo, J. M., Sorzano, C. O. S. FlexAlign: An Accurate and Fast Algorithm for Movie Alignment in Cryo-Electro..." current
• 07:5207:52, 6 July 2020 diff hist +98 Main Page →2D Preprocessing
• 07:4007:40, 6 July 2020 diff hist +1,596 N 2020Sanchez Cleaner Created page with "== Citation == Sanchez-Garcia, R.; Segura, J.; Maluenda, D.; Sorzano, C. O. S., Carazo, J. M. MicrographCleaner: A python package for cryo-EM micrograph cleaning using deep..." current
• 07:3707:37, 6 July 2020 diff hist +135 Main Page →Automatic particle picking
• 07:2007:20, 6 July 2020 diff hist +1,802 N 2020Sazzed helices Created page with "== Citation == Sazzed, S.; Scheible, P.; Alshammari, M.; Wriggers, W., He, J. Cylindrical Similarity Measurement for Helices in Medium-Resolution Cryo-Electron Microscopy Den..." current
• 07:1707:17, 6 July 2020 diff hist +68 Main Page →Validation
• 06:5806:58, 6 July 2020 diff hist +1,319 N 2020Bromberg Aberrations Created page with "== Citation == Bromberg, R.; Guo, Y.; Borek, D., Otwinowski, Z. High-resolution cryo-EM reconstructions in the presence of substantial aberrations. IUCrJ, 202, 7, 445-452 =..." current
• 06:5506:55, 6 July 2020 diff hist +90 Main Page →Image formation

29 June 2020

• 18:4918:49, 29 June 2020 diff hist +305 Nm User talk:Garygangren Welcome! current
• 18:4918:49, 29 June 2020 diff hist +649 Nm User:Garygangren Creating user page for new user.

24 June 2020

• 06:4206:42, 24 June 2020 diff hist +1,282 N 2020Baxa Facility Created page with "== Citation == Baxa, U.; Edwards, T. J.; Hutchison, M.; Wier, A. D.; Finney, J.; Wang, H. & Subramaniam, S. The National Cryo-EM Facility at Frederick National Laboratory..." current
• 06:4006:40, 24 June 2020 diff hist +74 Main Page →Automated data collection

10 June 2020

• 17:3217:32, 10 June 2020 diff hist +1,360 N 2020Farkas MemBlob Created page with "== Citation == Farkas, B.; Csizmadia, G.; Katona, E.; Tusnády, G. E. & Hegedűs, T. MemBlob database and server for identifying transmembrane regions using cryo-EM maps...." current
• 17:3017:30, 10 June 2020 diff hist +95 Main Page →Segmentation

4 June 2020

• 15:0015:00, 4 June 2020 diff hist +2,032 N 2020Bendory Review Created page with "== Citation == Bendory, Tamir and Bartesaghi, Alberto and Singer, Amit. Single-particle cryo-electron microscopy: Mathematical theory, computational challenges, and opportuni..." current
• 14:5714:57, 4 June 2020 diff hist +76 Main Page →Books and reviews
• 14:2114:21, 4 June 2020 diff hist +1,490 N 2020Zehni Joint Created page with "== Citation == Zehni, M. and Donati, L. and Soubies, E. and Zhao, Z. and Unser, M. Joint angular refinement and reconstruction for single-particle Cryo-EM. IEEE Trans. Image..." current
• 14:2014:20, 4 June 2020 diff hist 0 Main Page →3D Alignment
• 14:1914:19, 4 June 2020 diff hist +86 Main Page →3D Alignment
• 08:4408:44, 4 June 2020 diff hist +1,492 N 2020Ho CryoID Created page with "== Citation == Ho, C.-M.; Li, X.; Lai, M.; Terwilliger, T. C.; Beck, J. R.; Wohlschlegel, J.; Goldberg, D. E.; Fitzpatrick, A. W. P. & Zhou, Z. H. Bottom-up structural pr..." current
• 08:4208:42, 4 June 2020 diff hist +107 Main Page →Fitting and docking

28 May 2020

• 06:3506:35, 28 May 2020 diff hist +72 Main Page →Online courses and Learning material

18 March 2020

• 16:4316:43, 18 March 2020 diff hist +116 Main Page →Online courses and Learning material

11 March 2020

• 18:5818:58, 11 March 2020 diff hist +1,135 N 2020Cianfrocco Wrong Created page with "== Citation == Cianfrocco, M. A. & Kellogg, E. H. What Could Go Wrong? A Practical Guide to Single-Particle Cryo-EM: From Biochemistry to Atomic Models. Journal of chemical..." current
• 18:5218:52, 11 March 2020 diff hist +62 Main Page →Sample preparation

3 March 2020

• 21:2621:26, 3 March 2020 diff hist +1,456 N 2020Song Tygress Created page with "== Citation == Song, K.; Shang, Z.; Fu, X.; Lou, X.; Grigorieff, N. & Nicastro, D. In situ structure determination at nanometer resolution using TYGRESS. Nature methods, 202..." current
• 21:2521:25, 3 March 2020 diff hist +104 Main Page →3D reconstruction
• 21:2221:22, 3 March 2020 diff hist +1,806 N 1988Stewart Rec Created page with "== Citation == Stewart, M. Computer image processing of electron micrographs of biological structures with helical symmetry. Journal of electron microscopy technique, 1988 ,..." current
• 21:1921:19, 3 March 2020 diff hist +1,326 N 2010Egelman Pitfalls Created page with "== Citation == Egelman, E. H. Reconstruction of helical filaments and tubes. Methods in enzymology, 2010 , 482 , 167-183 == Abstract == While Fourier-Bessel methods gave..." current
• 21:1821:18, 3 March 2020 diff hist +163 Main Page →Reconstruction

2 March 2020

• 12:5212:52, 2 March 2020 diff hist +1,590 N 2020Joseph comparison Created page with "== Citation == Joseph, A. P.; Lagerstedt, I.; Jakobi, A.; Burnley, T.; Patwardhan, A.; Topf, M. & Winn, M. Comparing Cryo-EM Reconstructions and Validating Atomic Model Fit U..." current