User contributions for WikiSysop

24 August 2023

• 05:5205:52, 24 August 2023 diff hist +1,886 N 2023Herreros ZART Created page with "== Citation == Herreros, D. / Kiska, J. / Ram\irez-Aportela, E. / Filipovic, J. / Carazo, J. M. / Sorzano, C. O. S. ZART: A Novel Multiresolution Reconstruction Algorithm wit..." current
• 05:5105:51, 24 August 2023 diff hist +107 Main Page →3D Reconstruction
• 05:4605:46, 24 August 2023 diff hist +1,570 N 2023Kim Review Created page with "== Citation == Kim, Hannah Hyun-Sook / Uddin, Mostofa Rafid / Xu, Min / Chang, Yi-Wei. Computational methods toward unbiased pattern mining and structure determination in cry..." current
• 05:4405:44, 24 August 2023 diff hist +87 Main Page →Books and reviews

23 August 2023

• 17:0517:05, 23 August 2023 diff hist +1,202 N 2023Toader Heterogeneity Created page with "== Citation == Toader, Bogdan / Sigworth, Fred J. / Lederman, Roy R. Methods for Cryo-EM single particle reconstruction of macromolecules having continuous heterogeneity. 202..." current
• 17:0417:04, 23 August 2023 diff hist +80 Main Page →Books and reviews
• 16:4516:45, 23 August 2023 diff hist +1,656 N 2023Si DeNovo Created page with "== Citation == Si, Dong / Chen, Jason / Nakamura, Andrew / Chang, Luca / Guan, Haowen. Smart de novo Macromolecular Structure Modeling from Cryo-EM Maps. 2023. J. Molecular B..." current
• 16:4516:45, 23 August 2023 diff hist +73 Main Page →Books and reviews

22 August 2023

• 09:5809:58, 22 August 2023 diff hist +1,865 N 2023Liu AirWater Created page with "== Citation == Liu, Nan / Wang, Hong-Wei. Better Cryo-EM Specimen Preparation: How to Deal with the Air--Water Interface? 2023. J. Molecular Biology, Vol. 435, No. 9, p. 1679..." current
• 09:5709:57, 22 August 2023 diff hist +114 Main Page →Sample preparation
• 09:3709:37, 22 August 2023 diff hist +1,420 N 2023Seitz Geometric Created page with "== Citation == Seitz, Evan / Frank, Joachim / Schwander, Peter. Beyond ManifoldEM: geometric relationships between manifold embeddings of a continuum of 3D molecular structur..." current
• 09:3609:36, 22 August 2023 diff hist +160 Main Page →3D Heterogeneity

14 August 2023

• 07:5507:55, 14 August 2023 diff hist +1,297 N 2023Zeng AITOM Created page with "== Citation == Zeng, Xiangrui / Kahng, Anson / Xue, Liang / Mahamid, Julia / Chang, Yi-Wei / Xu, Min. High-throughput cryo-ET structural pattern mining by unsupervised deep i..." current
• 07:5407:54, 14 August 2023 diff hist +116 Main Page →Segmentation
• 06:5006:50, 14 August 2023 diff hist +1,187 N 2023Millan LL Created page with "== Citation == Millán, Claudia / McCoy, Airlie J. / Terwilliger, Thomas C. / Read, Randy J. Likelihood-based docking of models into cryo-EM maps. 2023. Acta Crystallographic..." current
• 06:4906:49, 14 August 2023 diff hist +89 Main Page →Fitting and docking
• 06:4506:45, 14 August 2023 diff hist +1,451 N 2023Read LL Created page with "== Citation == Read, Randy J. / Millán, Claudia / McCoy, Airlie J. / Terwilliger, Thomas C. Likelihood-based signal and noise analysis for docking of models into cryo-EM map..." current
• 06:4406:44, 14 August 2023 diff hist +116 Main Page →Fitting and docking

11 August 2023

• 07:0707:07, 11 August 2023 diff hist +1,700 N 2023Dai CryoRes Created page with "== Citation == Dai, M. / Dong, Z. / Xu, K. / Zhang, Q. C. CryoRes: Local Resolution Estimation ofCryo-EM Density Maps by Deep Learning. 2023. J. Molecular Biology, Vol. 435,..." current
• 07:0507:05, 11 August 2023 diff hist +76 Main Page →Resolution

10 August 2023

• 07:0807:08, 10 August 2023 diff hist +1,847 N 2023Neselu IceThickness Created page with "== Citation == Neselu, Kasahun / Wang, Bing / Rice, William J. / Potter, Clinton S. / Carragher, Bridget / Chua, Eugene Y. D. Measuring the effects of ice thickness on resolu..." current
• 07:0707:07, 10 August 2023 diff hist +82 Main Page →Sample preparation
• 06:5806:58, 10 August 2023 diff hist +1,555 N 2023Chen Joint Created page with "== Citation == Chen, Yu-Xuan / Feng, Dagan / Shen, Hong-Bin. Cryo-EM image alignment: From pair-wise to joint with deep unsupervised difference learning. 2023. J. Structural..." current
• 06:5806:58, 10 August 2023 diff hist +116 Main Page →2D Classification and clustering
• 06:3406:34, 10 August 2023 diff hist +2,204 N 2023Huang ZSSR Created page with "== Citation == Huang, Qinwen / Zhou, Ye / Liu, Hsuan-Fu / Bartesaghi, Alberto. Multiple-image super-resolution of cryo-electron micrographs based on deep internal learning. 2..." current
• 06:3206:32, 10 August 2023 diff hist +99 Main Page →2D Preprocessing

8 August 2023

• 06:5506:55, 8 August 2023 diff hist +1,983 N 2023Kinman Analysis Created page with "== Citation == Kinman, Laurel F. / Powell, Barrett M. / Zhong, Ellen D. / Berger, Bonnie / Davis, Joseph H. Uncovering structural ensembles from single-particle cryo-EM data..." current
• 06:5506:55, 8 August 2023 diff hist +102 Main Page →3D Heterogeneity

7 August 2023

• 06:2806:28, 7 August 2023 diff hist +1,492 N 2023Amann TimeResolved Created page with "== Citation == Amann, Sascha Josef / Keihsler, Demian / Bodrug, Tatyana / Brown, Nicholas G. / Haselbach, David. Frozen in time: analyzing molecular dynamics with time-resolv..." current
• 06:2706:27, 7 August 2023 diff hist +74 Main Page →Books and reviews
• 06:2206:22, 7 August 2023 diff hist +2,375 N 2022Burley PDB Created page with "== Citation == Burley, Stephen K. / Berman, Helen M. / Chiu, Wah / Dai, Wei / Flatt, Justin W. / Hudson, Brian P. / Kaelber, Jason T. / Khare, Sagar D. / Kulczyk, Arkadiusz W..." current
• 06:2106:21, 7 August 2023 diff hist +78 Main Page →Books and reviews
• 06:1106:11, 7 August 2023 diff hist +2,034 N 2023Kim Ptolemy Created page with "== Citation == Kim, Paul T. / Noble, Alex J. / Cheng, Anchi / Bepler, Tristan. Learning to automate cryo-electron microscopy data collection with Ptolemy. 2023. IUCrJ, Vol. 1..." current
• 06:1006:10, 7 August 2023 diff hist +72 Main Page →Automated data collection

26 July 2023

• 13:3513:35, 26 July 2023 diff hist +2,711 N 2023Cheng Leginon Created page with "== Citation == Cheng, Anchi / Kim, Paul T. / Kuang, Huihui / Mendez, Joshua H. / Chua, Eugene Y. D. / Maruthi, Kashyap / Wei, Hui / Sawh, Anjelique / Aragon, Mahira F. / Serb..." current
• 13:3413:34, 26 July 2023 diff hist +74 Main Page →Automated data collection

25 July 2023

• 10:1410:14, 25 July 2023 diff hist +1,852 N 2023Liu AWI Created page with "== Citation == Liu, Nan / Wang, Hong-Wei. Better Cryo-EM Specimen Preparation: How to Deal with the Air--Water Interface? 2023, J. Molecular Biology, Vol. 435, No. 9, p. 1679..." current
• 10:1310:13, 25 July 2023 diff hist +66 Main Page →Books and reviews
• 09:5809:58, 25 July 2023 diff hist +1,558 N 2023Schreiber charge Created page with "== Citation == Schreiber, Makoto Tokoro / Maigné, Alan / Beleggia, Marco / Shibata, Satoshi / Wolf, Matthias. Temporal dynamics of charge buildup in cryo-electron microscopy..." current
• 09:5309:53, 25 July 2023 diff hist +74 Main Page →Image formation
• 09:1109:11, 25 July 2023 diff hist +1,482 N 2023Seifer RevisedSaxton Created page with "== Citation == Seifer, Shahar. Sampling theory perspective on tomographic tilt increment schemes. 2023. Ultramicroscopy, Vol. 245, p. 113669 == Abstract == Given a limited..." current
• 09:1009:10, 25 July 2023 diff hist +98 Main Page →Collection geometry
• 07:5907:59, 25 July 2023 diff hist +2,104 N 2022Zhang DRVAE Created page with "== Citation == Zhang, Dongxu / Yan, Yang / Huang, Yulin / Liu, Bowen / Zheng, Qingbing / Zhang, Jun / Xia, Ningshao. Unsupervised Cryo-EM Images Denoising and Clustering base..." current
• 07:5807:58, 25 July 2023 diff hist +88 Main Page →2D Classification and clustering

24 July 2023

• 09:0809:08, 24 July 2023 diff hist +1,710 N 2023Terashi DAQrefine Created page with "== Citation == Terashi, Genki / Wang, Xiao / Kihara, Daisuke. Protein model refinement for cryo-EM maps using AlphaFold2 and the DAQ score. 2023. Acta Crystallographica Secti..." current
• 09:0709:07, 24 July 2023 diff hist +92 Main Page →Fitting and docking
• 08:4208:42, 24 July 2023 diff hist +1,526 N 2023Zheng Ultraflat Created page with "== Citation == Zheng, Liming / Liu, Nan / Gao, Xiaoyin / Zhu, Wenqing / Liu, Kun / Wu, Cang / Yan, Rui / Zhang, Jincan / Gao, Xin / Yao, Yating / others. Uniform thin ice on..." current
• 08:4108:41, 24 July 2023 diff hist +85 Main Page →Sample preparation

20 July 2023

• 07:5707:57, 20 July 2023 diff hist +1,472 N 2022Bouvette SmartScope Created page with "== Citation == Bouvette, Jonathan / Huang, Qinwen / Riccio, Amanda A. / Copeland, William C. / Bartesaghi, Alberto / Borgnia, Mario J. Automated systematic evaluation of cryo..." current
• 07:5507:55, 20 July 2023 diff hist +56 Main Page →Automated data collection