User contributions for WikiSysop

22 September 2023

• 08:1208:12, 22 September 2023 diff hist +74 Main Page →Sharpening of high resolution information

21 September 2023

• 08:0808:08, 21 September 2023 diff hist +1,775 N 2023Blau FittingML Created page with "== Citation == Blau, Christian / Yvonnesdotter, Linnea / Lindahl, Erik. Gentle and fast all-atom model refinement to cryo-EM densities via a maximum likelihood approach. 2023..." current
• 08:0708:07, 21 September 2023 diff hist +96 Main Page →Fitting and docking
• 07:5907:59, 21 September 2023 diff hist +1,453 N 2023Tang Conformational Created page with "== Citation == Tang, Wai Shing / Zhong, Ellen D. / Hanson, Sonya M. / Thiede, Erik H. / Cossio, Pilar. Conformational heterogeneity and probability distributions from single-..." current
• 07:5807:58, 21 September 2023 diff hist +113 Main Page →Books and reviews
• 07:5107:51, 21 September 2023 diff hist +1,608 N 2023Short MRC2020 Created page with "== Citation == Short, J. M. / Palmer, C. M. / Burnley, T. / Winn, M. D. / Zhang, Q. / Venkataram Prasad, B. V. / Chen, S. / Crowther, R. A. / Unwin, P. N. T. / Henderson, R...." current
• 07:5007:50, 21 September 2023 diff hist +110 Main Page →Software

20 September 2023

• 06:3806:38, 20 September 2023 diff hist +2,741 N 2023Conesa Scipion3 Created page with "== Citation == Conesa, Pablo / Fonseca, Yunior C. / de la Morena, Jorge Jiménez / Sharov, Grigory / de la Rosa-Trev\in, Jose Miguel / Cuervo, Ana / Mena, Alberto Garc\ia / d..." current
• 06:3506:35, 20 September 2023 diff hist +80 Main Page →Software
• 06:1206:12, 20 September 2023 diff hist +1,571 N 2023Genthe PickYolo Created page with "== Citation == Genthe, Erik / Miletic, Sean / Tekkali, Indira / James, Rory Hennell / Marlovits, Thomas C. / Heuser, Philipp. PickYOLO: Fast deep learning particle detector f..." current
• 06:1006:10, 20 September 2023 diff hist +73 Main Page →Subtomogram analysis

14 September 2023

• 07:0707:07, 14 September 2023 diff hist +1,799 N 2023Vuillemot MDTOMO Created page with "== Citation == Vuillemot, Rémi / Rouiller, Isabelle / Jonić, Slavica. MDTOMO method for continuous conformational variability analysis in cryo electron subtomograms based o..." current
• 07:0607:06, 14 September 2023 diff hist +109 Main Page →Molecular 3D dynamics

13 September 2023

• 08:5908:59, 13 September 2023 diff hist +1,635 N 2023Dhakal CryoPPP Created page with "== Citation == Dhakal, Ashwin / Gyawali, Rajan / Wang, Liguo / Cheng, Jianlin. A large expert-curated cryo-EM image dataset for machine learning protein particle picking. 202..." current
• 08:5408:54, 13 September 2023 diff hist +79 Main Page →Automatic particle picking
• 08:4508:45, 13 September 2023 diff hist −118 Main Page →Fitting and docking
• 08:4308:43, 13 September 2023 diff hist +118 Main Page →Fitting and docking

11 September 2023

• 07:1407:14, 11 September 2023 diff hist +1,613 N 2023Herreros Hub Created page with "== Citation == Herreros, D. / Krieger, J. M. / Fonseca, Y. / Conesa, P. / Harastani, M. / Vuillemot, R. / Hamitouche, I. / Serrano Gutiérrez, R. / Gragera, M. / Melero, R. /..." current
• 07:1407:14, 11 September 2023 diff hist +108 Main Page →3D Heterogeneity

7 September 2023

• 16:2216:22, 7 September 2023 diff hist +1,913 N 2017Barnett Marching Created page with "== Citation == Barnett, Alex / Greengard, Leslie / Pataki, Andras / Spivak, Marina. Rapid solution of the cryo-EM reconstruction problem by frequency marching. 2017. SIAM J...." current
• 16:2116:21, 7 September 2023 diff hist +84 Main Page →3D Reconstruction

6 September 2023

• 12:1712:17, 6 September 2023 diff hist +1,512 N 2023Seitz ESPER Created page with "== Citation == Seitz, Evan / Acosta-Reyes, Francisco / Maji, Suvrajit / Schwander, Peter / Frank, Joachim. Recovery of conformational continuum from single-particle Cryo-EM i..." current
• 12:1212:12, 6 September 2023 diff hist +131 Main Page →3D Heterogeneity
• 12:0312:03, 6 September 2023 diff hist +1,670 N 2023Dsouza benchmark Created page with "== Citation == Dsouza, Raison / Mashayekhi, Ghoncheh / Etemadpour, Roshanak / Schwander, Peter / Ourmazd, Abbas. Energy landscapes from cryo-EM snapshots: a benchmarking stud..." current
• 12:0112:01, 6 September 2023 diff hist +108 Main Page →3D Heterogeneity
• 11:5511:55, 6 September 2023 diff hist +1,698 N 2008Orzechowski Flexible Created page with "== Citation == Orzechowski, Marek / Tama, Florence. Flexible fitting of high-resolution x-ray structures into cryoelectron microscopy maps using biased molecular dynamics sim..." current
• 11:5111:51, 6 September 2023 diff hist +94 Main Page →Fitting and docking

1 September 2023

• 12:1512:15, 1 September 2023 diff hist +1,605 N 2023He EMReady Created page with "== Citation == He, Jiahua / Li, Tao / Huang, Sheng-You. Improvement of cryo-EM maps by simultaneous local and non-local deep learning. 2023. Nature Communications, Vol. 14, N..." current
• 12:1412:14, 1 September 2023 diff hist +101 Main Page →Sharpening of high resolution information

31 August 2023

• 16:0316:03, 31 August 2023 diff hist +866 N 2023Vilas FSO Created page with "== Citation == Vilas, Jose-Luis / Tagare, Hemant D. New measures of anisotropy of cryo-EM maps. 2023. Nature Methods, 20, p. 1021-1024 == Abstract == We propose two new me..." current
• 16:0216:02, 31 August 2023 diff hist +81 Main Page →Resolution
• 15:5915:59, 31 August 2023 diff hist +1,598 N 2023Zhang REST Created page with "== Citation == Zhang, Haonan / Li, Yan / Liu, Yanan / Li, Dongyu / Wang, Lin / Song, Kai / Bao, Keyan / Zhu, Ping. A method for restoring signals and revealing individual mac..." current
• 15:5715:57, 31 August 2023 diff hist +81 Main Page →Missing-wedge correction

30 August 2023

• 10:1410:14, 30 August 2023 diff hist +1,417 N 2023Reggiano MEDIC Created page with "== Citation == Reggiano, Gabriella / Lugmayr, Wolfgang / Farrell, Daniel / Marlovits, Thomas C. / DiMaio, Frank. Residue-level error detection in cryoelectron microscopy mode..." current
• 10:1210:12, 30 August 2023 diff hist +80 Main Page →Fitting and docking

29 August 2023

• 06:5706:57, 29 August 2023 diff hist +1,529 N 2023Chang CryoFold Created page with "== Citation == Chang, Liwei / Mondal, Arup / MacCallum, Justin L. / Perez, Alberto. CryoFold 2.0: Cryo-EM Structure Determination with MELD. 2023. The J. of Physical Chemistr..." current
• 06:5706:57, 29 August 2023 diff hist +106 Main Page →Fitting and docking

28 August 2023

• 06:4506:45, 28 August 2023 diff hist +2,300 N 2023Matsumoto DEFmap Created page with "== Citation == Matsumoto, Shigeyuki / Ishida, Shoichi / Terayama, Kei / Okuno, Yasuhshi. Quantitative analysis of protein dynamics using a deep learning technique combined wi..." current
• 06:4406:44, 28 August 2023 diff hist 0 Main Page →3D Heterogeneity
• 06:4306:43, 28 August 2023 diff hist +114 Main Page →3D Heterogeneity
• 06:3506:35, 28 August 2023 diff hist +1,521 N 2023Punjani 3DFlex Created page with "== Citation == Punjani, Ali / Fleet, David J. 3DFlex: determining structure and motion of flexible proteins from cryo-EM. 2023. Nature Methods, Vol. 20, p. 860-870 == Abstr..." current
• 06:3406:34, 28 August 2023 diff hist +80 Main Page →3D Heterogeneity
• 06:2706:27, 28 August 2023 diff hist +2,343 N 2023Wang Autoencoder Created page with "== Citation == Wang, Xiangwen / Lu, Yonggang / Lin, Xianghong / Li, Jianwei / Zhang, Zequn. An Unsupervised Classification Algorithm for Heterogeneous Cryo-EM Projection Imag..." current
• 06:2606:26, 28 August 2023 diff hist +87 Main Page →3D Heterogeneity

25 August 2023

• 06:5006:50, 25 August 2023 diff hist +2,707 N 2023Bromberg Complex Created page with "== Citation == Bromberg, Raquel / Guo, Yirui / Borek, Dominika / Otwinowski, Zbyszek. CryoEM single particle reconstruction with a complex-valued particle stack. 2023. J. Str..." current
• 06:4906:49, 25 August 2023 diff hist +102 Main Page →Image formation
• 05:4905:49, 25 August 2023 diff hist +2,170 N 2023Last Ice Created page with "== Citation == Last, Mart G. F. / Voortman, Lenard M. / Sharp, Thomas H. Measuring cryo-TEM sample thickness using reflected light microscopy and machine learning. 2023. J. S..." current
• 05:4705:47, 25 August 2023 diff hist +106 Main Page →Automated data collection

24 August 2023

• 06:0406:04, 24 August 2023 diff hist +1,209 N 2023Chen GMM Created page with "== Citation == Chen, Muyuan / Toader, Bogdan / Lederman, Roy. Integrating molecular models into CryoEM heterogeneity analysis using scalable high-resolution deep Gaussian mix..." current
• 06:0306:03, 24 August 2023 diff hist +98 Main Page →3D Heterogeneity