User contributions for WikiSysop

5 August 2020

• 08:3608:36, 5 August 2020 diff hist +1,445 N 2020Kovacs Filaments Created page with "== Citation == Kovacs, J.; Song, J.; Auer, M.; He, J.; Hunter, W.; Wriggers, W. Correction of Missing-Wedge Artifacts in Filamentous Tomograms by Template-Based Constrained D..." current
• 08:3408:34, 5 August 2020 diff hist +102 Main Page →Noise reduction

4 August 2020

• 07:1507:15, 4 August 2020 diff hist +2,474 N 2020Vant Flexible Created page with "== Citation == Vant, J. W.; Lahey, S.-L. J.; Jana, K.; Shekhar, M.; Sarkar, D.; Munk, B. H.; Kleinekathöfer, U.; Mittal, S.; Rowley, C.; Singharoy, A. Flexible Fitting of Sm..." current
• 07:1407:14, 4 August 2020 diff hist +110 Main Page →Fitting and docking
• 06:5706:57, 4 August 2020 diff hist +1,870 N 2020Tiwari PixelSize Created page with "== Citation == Tiwari, S. P.; Chhabra, S.; Tama, F.; Miyashita, O. Computational Protocol for Assessing the Optimal Pixel Size to Improve the Accuracy of Single-particle Cryo..." current
• 06:5506:55, 4 August 2020 diff hist +79 Main Page →Validation

3 August 2020

• 11:3311:33, 3 August 2020 diff hist +2,536 N 2020Schenk CryoFlare Created page with "== Citation == Schenk, A. D.; Cavadini, S.; Thomä, N. H.; Genoud, C. Live Analysis and Reconstruction of Single-Particle Cryo-Electron Microscopy Data with CryoFLARE. Journa..." current
• 11:3111:31, 3 August 2020 diff hist +80 Main Page →Automated data collection
• 11:2611:26, 3 August 2020 diff hist −83 Main Page →Validation
• 11:2411:24, 3 August 2020 diff hist +83 Main Page →Validation
• 11:1211:12, 3 August 2020 diff hist −1 2020Leelananda Constraints No edit summary
• 11:1211:12, 3 August 2020 diff hist +2,403 N 2020Leelananda Constraints Created page with "== Citation == Article (Leelananda2020) Leelananda, S. P. & Lindert, S. Using NMR Chemical Shifts and Cryo-EM Density Restraints in Iterative Rosetta-MD Protein Structure R..."
• 11:1111:11, 3 August 2020 diff hist +144 Main Page →Fitting and docking

30 July 2020

• 07:3907:39, 30 July 2020 diff hist +1,729 N 2020Akbar Review Created page with "== Citation == Akbar, S.; Mozumder, S.; Sengupta, J. Retrospect and Prospect of Single Particle Cryo-Electron Microscopy: The Class of Integral Membrane Proteins as an Exampl..." current
• 07:3707:37, 30 July 2020 diff hist +100 Main Page →Books and reviews
• 07:3307:33, 30 July 2020 diff hist +895 N 2020Abriata Review Created page with "== Citation == Abriata, L. A.; Dal Peraro, M. Will Cryo-Electron Microscopy Shift the Current Paradigm in Protein Structure Prediction? Journal of chemical information and mo..." current
• 07:3207:32, 30 July 2020 diff hist +71 Main Page →Books and reviews
• 07:2907:29, 30 July 2020 diff hist −1 2020Kim Review No edit summary current
• 07:2807:28, 30 July 2020 diff hist +806 N 2020Kim Review Created page with "== Citation == Kim, D. N.; Gront, D.; Sanbonmatsu, K. Y. Practical Considerations for Atomistic Structure Modeling with Cryo-EM Maps. Journal of chemical information and mode..."
• 07:2707:27, 30 July 2020 diff hist +79 Main Page →Fitting and docking

28 July 2020

• 01:2501:25, 28 July 2020 diff hist +968 N 2020McCafferty Review Created page with "== Citation == McCafferty, C. L.; Verbeke, E. J.; Marcotte, E. M.; Taylor, D. W. Structural Biology in the Multi-Omics Era. Journal of chemical information and modeling, 2020..." current
• 01:2301:23, 28 July 2020 diff hist +79 Main Page →Books and reviews

27 July 2020

• 07:4807:48, 27 July 2020 diff hist +1,058 N 2020Costa MDeNM Created page with "== Citation == Costa, M. G. S.; Fagnen, C.; Vénien-Bryan, C.; Perahia, D. A New Strategy for Atomic Flexible Fitting in Cryo-EM Maps by Molecular Dynamics with Excited Norma..." current
• 07:4707:47, 27 July 2020 diff hist +95 Main Page →Fitting and docking
• 07:4307:43, 27 July 2020 diff hist +1,237 N 2020Cossio CrossValidation Created page with "== Citation == Cossio, P. Need for Cross-Validation of Single Particle Cryo-EM. Journal of chemical information and modeling, 2020, 60, 2413-2418 == Abstract == Cross-vali..." current
• 07:4207:42, 27 July 2020 diff hist +74 Main Page →Validation

24 July 2020

• 07:1807:18, 24 July 2020 diff hist +1,143 N 2020Hoh Buccaneer Created page with "== Citation == Hoh, S. W.; Burnley, T.; Cowtan, K. Current approaches for automated model building into cryo-EM maps using Buccaneer with CCP-EM. Acta crystallographica. Sect..." current
• 07:1607:16, 24 July 2020 diff hist +75 Main Page →Fitting and docking
• 07:0707:07, 24 July 2020 diff hist +1,622 N 2019Beckers FDR Created page with "== Citation == Beckers, M.; Jakobi, A. J.; Sachse, C. Thresholding of cryo-EM density maps by false discovery rate control. IUCrJ, 2019, 6, 18-33 == Abstract == Cryo-EM no..." current
• 07:0607:06, 24 July 2020 diff hist +97 Main Page →Segmentation
• 07:0407:04, 24 July 2020 diff hist +1,244 N 2020Beckers FDR Created page with "== Citation == Beckers, M.; Palmer, C. M.; Sachse, C. Confidence maps: statistical inference of cryo-EM maps. Acta crystallographica. Section D, Structural biology, 2020, 76,..." current
• 07:0107:01, 24 July 2020 diff hist +93 Main Page →Segmentation

20 July 2020

• 10:2110:21, 20 July 2020 diff hist +1,708 N 2020Zhong CryoDRGN Created page with "== Citation == Zhong, E. D.; Bepler, T.; Davis, J. H.; Berger, B. Reconstructing continuous distributions of 3D protein structure from cryo-EM images. Proc. Intl. Conf. on Le..." current
• 10:1910:19, 20 July 2020 diff hist +99 Main Page →3D Heterogeneity
• 09:5709:57, 20 July 2020 diff hist +2,025 N 2020Chen Atomic Created page with "== Citation == Chen, L.; He, J. Outlier Profiles of Atomic Structures Derived from X-ray Crystallography and from Cryo-Electron Microscopy. Molecules, 2020, 25 == Abstract =..." current
• 09:5609:56, 20 July 2020 diff hist +89 Main Page →Validation
• 09:4609:46, 20 July 2020 diff hist +1,154 N 2019Schorb ET Created page with "== Citation == Schorb, M.; Haberbosch, I.; Hagen, W. J. H.; Schwab, Y. & Mastronarde, D. N. Software tools for automated transmission electron microscopy. Nature methods,..." current
• 09:4509:45, 20 July 2020 diff hist +80 Main Page →Automated data collection
• 08:1708:17, 20 July 2020 diff hist +2,002 N 2020Sader Facility Created page with "== Citation == Sader, K.; Matadeen, R.; Castro Hartmann, P.; Halsan, T.; Schlichten, C. Industrial cryo-EM facility setup and management. Acta crystallographica. Section D, S..." current
• 08:1608:16, 20 July 2020 diff hist +92 Main Page →Automated data collection

16 July 2020

• 07:5307:53, 16 July 2020 diff hist +1,758 N 2020Maji Propagation Created page with "== Citation == Maji, S.; Liao, H.; Dashti, A.; Mashayekhi, G.; Ourmazd, A.; Frank, J. Propagation of Conformational Coordinates Across Angular Space in Mapping the Continuum..." current
• 07:5207:52, 16 July 2020 diff hist +105 Main Page →3D Heterogeneity
• 07:3707:37, 16 July 2020 diff hist +1,531 N 2020Zhou AutomaticSelection Created page with "== Citation == Zhou, Y.; Moscovich, A.; Bendory, T. & Bartesaghi, A. Unsupervised particle sorting for high-resolution single-particle cryo-EM. Inverse problems, 2020, 36..." current
• 07:3607:36, 16 July 2020 diff hist +106 Main Page →3D Reconstruction
• 07:2207:22, 16 July 2020 diff hist +1,458 N 2020Dodd ModelBuilding Created page with "== Citation == Dodd, T.; Yan, C.; Ivanov, I. Simulation-Based Methods for Model Building and Refinement in Cryoelectron Microscopy. Journal of chemical information and modeli..." current
• 07:2007:20, 16 July 2020 diff hist +116 Main Page →Fitting and docking

15 July 2020

• 17:2417:24, 15 July 2020 diff hist +1,462 N 2020Terashi MainMastSeg Created page with "== Citation == Terashi, G.; Kagaya, Y. ; Kihara, D. MAINMASTseg: Automated Map Segmentation Method for Cryo-EM Density Maps with Symmetry. Journal of chemical information and..." current
• 17:2317:23, 15 July 2020 diff hist +83 Main Page →Segmentation
• 09:1709:17, 15 July 2020 diff hist +1,000 N 2020Zivanov HighOrder Created page with "== Citation == Zivanov, J.; Nakane, T., Scheres, S. H. W. Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in Relion-3.1. IUCrJ, 2020..." current
• 09:1509:15, 15 July 2020 diff hist +80 Main Page →CTF estimation and restoration