User contributions for WikiSysop

25 July 2023

• 07:5907:59, 25 July 2023 diff hist +2,104 N 2022Zhang DRVAE Created page with "== Citation == Zhang, Dongxu / Yan, Yang / Huang, Yulin / Liu, Bowen / Zheng, Qingbing / Zhang, Jun / Xia, Ningshao. Unsupervised Cryo-EM Images Denoising and Clustering base..." current
• 07:5807:58, 25 July 2023 diff hist +88 Main Page →2D Classification and clustering

24 July 2023

• 09:0809:08, 24 July 2023 diff hist +1,710 N 2023Terashi DAQrefine Created page with "== Citation == Terashi, Genki / Wang, Xiao / Kihara, Daisuke. Protein model refinement for cryo-EM maps using AlphaFold2 and the DAQ score. 2023. Acta Crystallographica Secti..." current
• 09:0709:07, 24 July 2023 diff hist +92 Main Page →Fitting and docking
• 08:4208:42, 24 July 2023 diff hist +1,526 N 2023Zheng Ultraflat Created page with "== Citation == Zheng, Liming / Liu, Nan / Gao, Xiaoyin / Zhu, Wenqing / Liu, Kun / Wu, Cang / Yan, Rui / Zhang, Jincan / Gao, Xin / Yao, Yating / others. Uniform thin ice on..." current
• 08:4108:41, 24 July 2023 diff hist +85 Main Page →Sample preparation

20 July 2023

• 07:5707:57, 20 July 2023 diff hist +1,472 N 2022Bouvette SmartScope Created page with "== Citation == Bouvette, Jonathan / Huang, Qinwen / Riccio, Amanda A. / Copeland, William C. / Bartesaghi, Alberto / Borgnia, Mario J. Automated systematic evaluation of cryo..." current
• 07:5507:55, 20 July 2023 diff hist +56 Main Page →Automated data collection

19 July 2023

• 06:5606:56, 19 July 2023 diff hist +1,653 N 2023Tang Reweighting Created page with "== Citation == Tang, Wai Shing / Silva-Sánchez, David / Giraldo-Barreto, Julian / Carpenter, Bob / Hanson, Sonya M. / Barnett, Alex H. / Thiede, Erik H. / Cossio, Pilar. Ens..." current
• 06:5406:54, 19 July 2023 diff hist +87 Main Page →3D Heterogeneity
• 06:4406:44, 19 July 2023 diff hist +1,422 N 2023Sharon Enhancement Created page with "== Citation == Sharon, Guy / Shkolnisky, Yoel / Bendory, Tamir. Signal enhancement for two-dimensional cryo-EM data processing. 2023. Biological Imaging, Vol. 3, p. e7 == A..." current
• 06:4306:43, 19 July 2023 diff hist +81 Main Page →2D Preprocessing
• 06:2906:29, 19 July 2023 diff hist +1,430 N 2022Wang Thunder Created page with "== Citation == Wang, Zhao / Ruan, Huabin / Yang, Guangwen / Li, Xueming. Parallelizing the cryo-EM structure determination in THUNDER using GPU cluster. 2022. Engineering Rep..." current
• 06:2806:28, 19 July 2023 diff hist +79 Main Page →3D Alignment

18 July 2023

• 07:1307:13, 18 July 2023 diff hist +1,220 N 2022Guaita Review Created page with "== Citation == Guaita, Margherita / Watters, Scott C. / Loerch, Sarah. Recent advances and current trends in cryo-electron microscopy. 2022. Current opinion in structural bio..." current
• 07:1207:12, 18 July 2023 diff hist +101 Main Page →Books and reviews
• 07:0807:08, 18 July 2023 diff hist +1,211 N 2022Metskas STA Created page with "== Citation == Metskas, Lauren Ann / Wilfong, Rosalie / Jensen, Grant J. Subtomogram averaging for biophysical analysis and supramolecular context. 2022. J. Structural Biolog..." current
• 07:0607:06, 18 July 2023 diff hist +78 Main Page →Subtomogram analysis

4 July 2023

• 14:0914:09, 4 July 2023 diff hist −1 Main Page →Image alignment
• 14:0514:05, 4 July 2023 diff hist +1,622 N 2022Zheng Aretomo Created page with "== Citation == Zheng, Shawn / Wolff, Georg / Greenan, Garrett / Chen, Zhen / Faas, Frank G. A. / Bárcena, Montserrat / Koster, Abraham J. / Cheng, Yifan / Agard, David A. Ar..." current
• 14:0414:04, 4 July 2023 diff hist +89 Main Page →Image alignment
• 13:5513:55, 4 July 2023 diff hist +1,476 N 2022Liedtke Review Created page with "== Citation == Liedtke, Janine / Depelteau, Jamie S. / Briegel, Ariane. How advances in cryo-electron tomography have contributed to our current view of bacterial cell biolog..." current
• 13:5413:54, 4 July 2023 diff hist +96 Main Page →Books and reviews
• 13:4913:49, 4 July 2023 diff hist +1,336 N 2022Donnat GAN Created page with "== Citation == Donnat, Claire / Levy, Axel / Poitevin, Frederic / Zhong, Ellen D. / Miolane, Nina. Deep generative modeling for volume reconstruction in cryo-electron microsc..." current
• 13:4813:48, 4 July 2023 diff hist +87 Main Page →Books and reviews

28 June 2023

• 09:0209:02, 28 June 2023 diff hist +3,038 N 2022Urzhumtsev Direct Created page with "== Citation == Urzhumtsev, Alexandre G. / Urzhumtseva, Ludmila M. / Lunin, Vladimir Y. Direct calculation of cryo-EM and crystallographic model maps for real-space refinement..." current
• 09:0009:00, 28 June 2023 diff hist +90 Main Page →Fitting and docking
• 08:3508:35, 28 June 2023 diff hist +1,855 N 2022Beton Fitting Created page with "== Citation == Beton, Joseph George / Cragnolini, Tristan / Kaleel, Manaz / Mulvaney, Thomas / Sweeney, Aaron / Topf, Maya. Integrating model simulation tools and cryo-electr..." current
• 08:3408:34, 28 June 2023 diff hist +63 Main Page →Books and reviews
• 07:3707:37, 28 June 2023 diff hist +1,690 N 2023Heymann Ewald Created page with "== Citation == Heymann, J. Bernard. The Ewald sphere/focus gradient does not limit the resolution of cryoEM reconstructions. 2023. J. Structural Biology: X, Vol. 7, p. 100083..." current
• 07:3607:36, 28 June 2023 diff hist +127 Main Page →Image formation
• 07:1707:17, 28 June 2023 diff hist +1,783 N 2022Sorzano Validation Created page with "== Citation == Sorzano, C. O. S. / Vilas, J. L. / Ram\irez-Aportela, Erney / Krieger, J. / Del Hoyo, D. / de Isidro-Gómez, F. / Herreros, David / Fernandez-Giménez, Estrell..." current
• 07:0807:08, 28 June 2023 diff hist +81 Main Page →Validation

26 June 2023

• 09:1009:10, 26 June 2023 diff hist +1,649 N 2022Liu Isonet Created page with "== Citation == Liu, Yun-Tao / Zhang, Heng / Wang, Hui / Tao, Chang-Lu / Bi, Guo-Qiang / Zhou, Z. Hong. Isotropic reconstruction for electron tomography with deep learning. 20..." current
• 09:1009:10, 26 June 2023 diff hist +82 Main Page →Noise reduction
• 08:4708:47, 26 June 2023 diff hist +1,240 N 2022Urzhumtsev XrayEM Created page with "== Citation == Urzhumtsev, Alexandre / Lunin, Vladimir Y. Analytic modeling of inhomogeneous-resolution maps in cryo-electron microscopy and crystallography. 2022. IUCrJ, Vol..." current
• 08:3208:32, 26 June 2023 diff hist +97 Main Page →Fitting and docking

23 June 2023

• 13:0613:06, 23 June 2023 diff hist +1,065 N 2022Bepler Smart Created page with "== Citation == Bepler, Tristan / Borst, Andrew J. / Bouvette, Jonathan / Cannone, Giuseppe / Chen, Songye / Cheng, Anchi / Cheng, Ao / Fan, Quanfu / Grollios, Fanis / Gupta,..." current
• 13:0213:02, 23 June 2023 diff hist +60 Main Page →Automated data collection
• 09:3409:34, 23 June 2023 diff hist +1,454 N 2023Marshall PCA Created page with "== Citation == Marshall, Nicholas F. / Mickelin, Oscar / Shi, Yunpeng / Singer, Amit. Fast principal component analysis for cryo-electron microscopy images. 2023. Biological..." current
• 09:3409:34, 23 June 2023 diff hist +73 Main Page →2D Preprocessing
• 08:4408:44, 23 June 2023 diff hist +1,736 N 2022Garcia DeepHand Created page with "== Citation == Garcia Condado, J. / Muñoz-Barrutia, A. / Sorzano, C. O. S. Automatic determination of the handedness of Single-Particle maps of macromolecules solved by Cryo..." current
• 08:3508:35, 23 June 2023 diff hist +95 Main Page →Validation
• 08:1508:15, 23 June 2023 diff hist +1,367 N 2022Havelkova regularization Created page with "== Citation == Havelková, Eva / Hnětynková, Iveta. Iterative hybrid regularization for extremely noisy full models in single particle analysis. 2023. Linear Algebra and it..." current
• 08:1308:13, 23 June 2023 diff hist +104 Main Page →3D Reconstruction

16 June 2023

• 09:2109:21, 16 June 2023 diff hist +1,686 N 2022Levy CryoFire Created page with "== Citation == Levy, Axel / Wetzstein, Gordon / Martel, Julien N. P. / Poitevin, Frederic / Zhong, Ellen Amortized Inference for Heterogeneous Reconstruction in Cryo-EM 202..." current
• 09:2109:21, 16 June 2023 diff hist +110 Main Page →3D Heterogeneity

15 June 2023

• 05:5905:59, 15 June 2023 diff hist +1,703 N 2023Bendory Autocorrelation Created page with "== Citation == Bendory, Tamir / Khoo, Yuehaw / Kileel, Joe / Mickelin, Oscar / Singer, Amit. Autocorrelation analysis for cryo-EM with sparsity constraints: Improved sample c..." current
• 05:5505:55, 15 June 2023 diff hist +123 Main Page →3D Reconstruction
• 05:4305:43, 15 June 2023 diff hist +1,814 N 2022Hohle Ice Created page with "== Citation == Hohle, Markus Matthias / Lammens, Katja / Gut, Fabian / Wang, Bingzhi / Kahler, Sophia / Kugler, Kathrin / Till, Michael / Beckmann, Roland / Hopfner, Karl-Pet..." current