User contributions for CoSS

11 August 2014

• 10:1110:11, 11 August 2014 diff hist +1,453 N 2014Kishchenko SphericalDeconvolution Created page with "== Citation == Kishchenko, G. P. & Leith, A. Spherical deconvolution improves quality of single particle reconstruction. J Struct Biol, 2014, 187, 84-92 == Abstract == One ..." current
• 10:0910:09, 11 August 2014 diff hist +83 Main Page →Sharpening of high resolution information
• 10:0810:08, 11 August 2014 diff hist +2,195 N 2014Voortman LimitingFactors Created page with "== Citation == Voortman, L. M.; Vulović, M.; Maletta, M.; Voigt, A.; Franken, E. M.; Simonetti, A.; Peters, P. J.; van Vliet, L. J. & Rieger, B. Quantifying resolution limiti..." current
• 10:0710:07, 11 August 2014 diff hist +91 Main Page →Subtomogram analysis

25 July 2014

• 05:4505:45, 25 July 2014 diff hist +1,315 N 2013Nogales 3DEMLoupe Created page with "== Citation == Nogales-Cadenas R, Jonic S, Tama F, Arteni AA, Tabas-Madrid D, Vázquez M, Pascual-Montano A, Sorzano CO. 3DEM Loupe: Analysis of macromolecular dynamics using..." current
• 05:4405:44, 25 July 2014 diff hist +89 Main Page →Fitting and docking
• 05:4305:43, 25 July 2014 diff hist +1,544 N 2013Vargas ParticleQuality Created page with "== Citation == Vargas J, Abrishami V, Marabini R, de la Rosa-Trevín JM, Zaldivar A, Carazo JM, Sorzano CO. Particle quality assessment and sorting for automatic and semiauto..." current
• 05:4205:42, 25 July 2014 diff hist +92 Main Page →Automatic particle picking
• 05:4105:41, 25 July 2014 diff hist +92 Main Page →2D Preprocessing
• 05:4005:40, 25 July 2014 diff hist +1,980 N 2013Messaoudi EnergyFiltered Created page with "== Citation == Messaoudi C, Aschman N, Cunha M, Oikawa T, Sorzano CO, Marco S. Three-dimensional chemical mapping by EFTEM-TomoJ including improvement of SNR by PCA and ART r..." current
• 05:3905:39, 25 July 2014 diff hist +91 Main Page →3D reconstruction
• 05:3705:37, 25 July 2014 diff hist +1,666 N 2013DeLaRosa Xmipp30 Created page with "== Citation == de la Rosa-Trevín JM, Otón J, Marabini R, Zaldívar A, Vargas J, Carazo JM, Sorzano COS. Xmipp 3.0: an improved software suite for image processing in electr..." current
• 05:3605:36, 25 July 2014 diff hist +52 Main Page →Software
• 05:3505:35, 25 July 2014 diff hist +1,967 N 2014Vargas RANSAC Created page with "== Citation == Vargas J, Alvarez-Cabrera AL, Marabini R, Carazo JM, Sorzano COS. Efficient initial volume determination from electron microscopy images of single particles. B..." current
• 05:3305:33, 25 July 2014 diff hist +83 Main Page →3D Alignment
• 05:2205:22, 25 July 2014 diff hist +1,547 N 2014AlNasr Secondary Created page with "== Citation == Al Nasr, K.; Ranjan, D.; Zubair, M.; Chen, L.; He, J. == Abstract == Electron cryomicroscopy is becoming a major experimental technique in solving the struct..."
• 05:2105:21, 25 July 2014 diff hist +103 Main Page →Fitting and docking
• 05:1805:18, 25 July 2014 diff hist +1,770 N 2012Biswas Secondary Created page with "== Citation == Biswas A, Si D, Al Nasr K, Ranjan D, Zubair M, He J. Improved efficiency in cryo-EM secondary structure topology determination from inaccurate data. J Bioinfor..." current
• 05:1505:15, 25 July 2014 diff hist +89 Main Page →Fitting and docking
• 04:5904:59, 25 July 2014 diff hist +1,442 N 2014Jin NMA Created page with "== Citation == Jin Q, Sorzano COS, de la Rosa-Trevín JM, Bilbao-Castro JR, Núñez-Ramírez R, Llorca O, Tama F, Jonić S. Iterative elastic 3D-to-2D alignment method using ..." current
• 04:5704:57, 25 July 2014 diff hist +88 Main Page →3D Heterogeneity

14 April 2014

• 14:1314:13, 14 April 2014 diff hist +1,614 N 2014Zhao Aspire Created page with "== Citation == Zhao, Z. & Singer, A. Rotationally invariant image representation for viewing direction classification in cryo-EM. J Struct Biol, 2014, 186, 153-166 == Abstra..."
• 14:1214:12, 14 April 2014 diff hist +84 Main Page →2D Classification and clustering
• 14:0514:05, 14 April 2014 diff hist +1,317 N 2014Maiorca beadArtefacts Created page with "== Citation == Maiorca, M.; Millet, C.; Hanssen, E.; Abbey, B.; Kazmierczak, E. & Tilley, L. Local regularization of tilt projections reduces artifacts in electron tomography..." current
• 14:0414:04, 14 April 2014 diff hist +78 Main Page →Noise reduction
• 13:5613:56, 14 April 2014 diff hist +1,564 N 2014Hovden TiltFocus Created page with "== Citation == Hovden, R.; Ercius, P.; Jiang, Y.; Wang, D.; Yu, Y.; Abruña, H. D.; Elser, V. & Muller, D. A. Breaking the Crowther limit: Combining depth-sectioning and tilt..." current
• 13:5513:55, 14 April 2014 diff hist +82 Main Page →Collection geometry

13 March 2014

• 12:3912:39, 13 March 2014 diff hist +1,512 N 2014Kovacik wedgeArtefacts Created page with "== Citation == Kováčik, L.; Kerïeche, S.; Höög, J. L.; Jůda, P.; Matula, P. & Raška, I. A simple Fourier filter for suppression of the missing wedge ray artefacts in s..."
• 12:3512:35, 13 March 2014 diff hist +75 Main Page →Noise reduction
• 12:3312:33, 13 March 2014 diff hist −10 Main Page No edit summary
• 11:4811:48, 13 March 2014 diff hist +10 Main Page No edit summary

6 February 2014

• 07:3707:37, 6 February 2014 diff hist +1 Main Page →3D reconstruction
• 07:3607:36, 6 February 2014 diff hist +1 Main Page →3D reconstruction
• 07:3407:34, 6 February 2014 diff hist +1,984 N 2011Zhang LimitingFactors Created page with "== Citation == Zhang, X. & Zhou, Z. H. Limiting factors in atomic resolution cryo electron microscopy: no simple tricks. J. Structural Biology, 2011, 175, 253-263 == Abstrac..." current

10 January 2014

• 11:0911:09, 10 January 2014 diff hist +761 N 2014Kucukelbir Local Created page with "== Citation == Kucukelbir, A.; Sigworth, F. J. & Tagare, H. D. Quantifying the local resolution of cryo-EM density maps. Nat Methods, 2014, 11, 63-65 == Abstract == We prop..." current
• 11:0511:05, 10 January 2014 diff hist +99 Main Page →Resolution
• 10:4510:45, 10 January 2014 diff hist +1,481 N 2012Scheres Bayesian Created page with "== Citation == Scheres, S. H. W. A Bayesian view on cryo-EM structure determination. J. Molecular Biology, 2012, 415, 406-418 == Abstract == Three-dimensional (3D) structur..." current
• 10:4410:44, 10 January 2014 diff hist +93 Main Page →3D Heterogeneity

12 November 2013

• 05:3305:33, 12 November 2013 diff hist +3,092 N 2013Vulovic ImageFormation Created page with "== Citation == Vulovic, M. Modeling of image formation in cryo-electron microscopy Technical University of Delft, 2013 == Abstract == Knowledge of the structure of biologic..." current
• 05:3005:30, 12 November 2013 diff hist +97 Main Page →Image formation

11 November 2013

• 14:4114:41, 11 November 2013 diff hist +1,240 N 2006Penczek Bootstrap Created page with "== Citation == Penczek, P. A.; Yang, C.; Frank, J. & Spahn, C. M. Estimation of variance in single-particle reconstruction using the bootstrap technique J. Structural Biology..." current
• 14:4014:40, 11 November 2013 diff hist +78 Main Page →3D Heterogeneity
• 14:3814:38, 11 November 2013 diff hist +1,256 N 2009Spahn Bootstrap Created page with "== Citation == Spahn, C. M. T. & Penczek, P. A. Exploring conformational modes of macromolecular assemblies by multiparticle cryo-EM. Curr Opin Struct Biol, 2009, 19, 623-63..." current
• 14:3714:37, 11 November 2013 diff hist +76 Main Page →3D Heterogeneity

5 November 2013

• 14:4414:44, 5 November 2013 diff hist +1,424 N 2013Lopez Imodfit Created page with "== Citation == Lopéz-Blanco, J. R. & Chacón, P. iMODFIT: Efficient and robust flexible fitting based on vibrational analysis in internal coordinates. J Struct Biol, 2013 =..." current
• 14:4314:43, 5 November 2013 diff hist +77 Main Page →Fitting and docking
• 14:4014:40, 5 November 2013 diff hist +721 N 2013Fiddy SaxtonAlgorithm Created page with "== Citation == Fiddy, M. A. & Shahid, U. Legacies of the Gerchberg-Saxton algorithm. Ultramicroscopy, 2013, 134, 48-54 == Abstract == To celebrate W. Owen Saxton's 65th bir..." current
• 14:3814:38, 5 November 2013 diff hist +76 Main Page →Sharpening of high resolution information
• 14:3414:34, 5 November 2013 diff hist +1,594 N 2013Shatsky Averaging Created page with "== Citation == Shatsky, M.; Arbelaez, P.; Glaeser, R. M. & Brenner, S. E. Optimal and fast rotational alignment of volumes with missing data in Fourier space. J Struct Biol, ..." current
• 14:3214:32, 5 November 2013 diff hist +117 Main Page →Subtomogram analysis