User contributions for WikiSysop

27 July 2020

• 07:4307:43, 27 July 2020 diff hist +1,237 N 2020Cossio CrossValidation Created page with "== Citation == Cossio, P. Need for Cross-Validation of Single Particle Cryo-EM. Journal of chemical information and modeling, 2020, 60, 2413-2418 == Abstract == Cross-vali..." current
• 07:4207:42, 27 July 2020 diff hist +74 Main Page →Validation

24 July 2020

• 07:1807:18, 24 July 2020 diff hist +1,143 N 2020Hoh Buccaneer Created page with "== Citation == Hoh, S. W.; Burnley, T.; Cowtan, K. Current approaches for automated model building into cryo-EM maps using Buccaneer with CCP-EM. Acta crystallographica. Sect..." current
• 07:1607:16, 24 July 2020 diff hist +75 Main Page →Fitting and docking
• 07:0707:07, 24 July 2020 diff hist +1,622 N 2019Beckers FDR Created page with "== Citation == Beckers, M.; Jakobi, A. J.; Sachse, C. Thresholding of cryo-EM density maps by false discovery rate control. IUCrJ, 2019, 6, 18-33 == Abstract == Cryo-EM no..." current
• 07:0607:06, 24 July 2020 diff hist +97 Main Page →Segmentation
• 07:0407:04, 24 July 2020 diff hist +1,244 N 2020Beckers FDR Created page with "== Citation == Beckers, M.; Palmer, C. M.; Sachse, C. Confidence maps: statistical inference of cryo-EM maps. Acta crystallographica. Section D, Structural biology, 2020, 76,..." current
• 07:0107:01, 24 July 2020 diff hist +93 Main Page →Segmentation

20 July 2020

• 10:2110:21, 20 July 2020 diff hist +1,708 N 2020Zhong CryoDRGN Created page with "== Citation == Zhong, E. D.; Bepler, T.; Davis, J. H.; Berger, B. Reconstructing continuous distributions of 3D protein structure from cryo-EM images. Proc. Intl. Conf. on Le..." current
• 10:1910:19, 20 July 2020 diff hist +99 Main Page →3D Heterogeneity
• 09:5709:57, 20 July 2020 diff hist +2,025 N 2020Chen Atomic Created page with "== Citation == Chen, L.; He, J. Outlier Profiles of Atomic Structures Derived from X-ray Crystallography and from Cryo-Electron Microscopy. Molecules, 2020, 25 == Abstract =..." current
• 09:5609:56, 20 July 2020 diff hist +89 Main Page →Validation
• 09:4609:46, 20 July 2020 diff hist +1,154 N 2019Schorb ET Created page with "== Citation == Schorb, M.; Haberbosch, I.; Hagen, W. J. H.; Schwab, Y. & Mastronarde, D. N. Software tools for automated transmission electron microscopy. Nature methods,..." current
• 09:4509:45, 20 July 2020 diff hist +80 Main Page →Automated data collection
• 08:1708:17, 20 July 2020 diff hist +2,002 N 2020Sader Facility Created page with "== Citation == Sader, K.; Matadeen, R.; Castro Hartmann, P.; Halsan, T.; Schlichten, C. Industrial cryo-EM facility setup and management. Acta crystallographica. Section D, S..." current
• 08:1608:16, 20 July 2020 diff hist +92 Main Page →Automated data collection

16 July 2020

• 07:5307:53, 16 July 2020 diff hist +1,758 N 2020Maji Propagation Created page with "== Citation == Maji, S.; Liao, H.; Dashti, A.; Mashayekhi, G.; Ourmazd, A.; Frank, J. Propagation of Conformational Coordinates Across Angular Space in Mapping the Continuum..." current
• 07:5207:52, 16 July 2020 diff hist +105 Main Page →3D Heterogeneity
• 07:3707:37, 16 July 2020 diff hist +1,531 N 2020Zhou AutomaticSelection Created page with "== Citation == Zhou, Y.; Moscovich, A.; Bendory, T. & Bartesaghi, A. Unsupervised particle sorting for high-resolution single-particle cryo-EM. Inverse problems, 2020, 36..." current
• 07:3607:36, 16 July 2020 diff hist +106 Main Page →3D Reconstruction
• 07:2207:22, 16 July 2020 diff hist +1,458 N 2020Dodd ModelBuilding Created page with "== Citation == Dodd, T.; Yan, C.; Ivanov, I. Simulation-Based Methods for Model Building and Refinement in Cryoelectron Microscopy. Journal of chemical information and modeli..." current
• 07:2007:20, 16 July 2020 diff hist +116 Main Page →Fitting and docking

15 July 2020

• 17:2417:24, 15 July 2020 diff hist +1,462 N 2020Terashi MainMastSeg Created page with "== Citation == Terashi, G.; Kagaya, Y. ; Kihara, D. MAINMASTseg: Automated Map Segmentation Method for Cryo-EM Density Maps with Symmetry. Journal of chemical information and..." current
• 17:2317:23, 15 July 2020 diff hist +83 Main Page →Segmentation
• 09:1709:17, 15 July 2020 diff hist +1,000 N 2020Zivanov HighOrder Created page with "== Citation == Zivanov, J.; Nakane, T., Scheres, S. H. W. Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in Relion-3.1. IUCrJ, 2020..." current
• 09:1509:15, 15 July 2020 diff hist +80 Main Page →CTF estimation and restoration
• 09:0609:06, 15 July 2020 diff hist +1,491 N 2020Ramlaul Sidesplitter Created page with "== Citation == Ramlaul, K.; Palmer, C. M.; Nakane, T., Aylett, C. H. S. Mitigating local over-fitting during single particle reconstruction with SIDESPLITTER. Journal of stru..." current
• 09:0509:05, 15 July 2020 diff hist +98 Main Page →3D Reconstruction
• 08:5508:55, 15 July 2020 diff hist +2,335 N 2020Xie Automatic Created page with "== Citation == Xie, R.; Chen, Y.-X.; Cai, J.-M.; Yang, Y., Shen, H.-B. SPREAD: A Fully Automated Toolkit for Single-Particle Cryogenic Electron Microscopy Data 3D Reconstruct..." current
• 08:5408:54, 15 July 2020 diff hist +84 Main Page →3D Reconstruction

9 July 2020

• 07:2307:23, 9 July 2020 diff hist +1,652 N 2020Miolane VAEGAN Created page with "== Citation == Miolane, N.; Poitevin, F.; Li, Y.-T., Holmes, S. Estimation of orientation and camera parameters from cryo-electron microscopy images with variational autoenco..." current
• 07:2207:22, 9 July 2020 diff hist +75 Main Page →2D Classification and clustering
• 07:1107:11, 9 July 2020 diff hist +1,051 N 2020Marshall Invariants Created page with "== Citation == Marshall, N. F.; Lan, T.-Y.; Bendory, T., Singer, A. Image recovery from rotational and translational invariants. Proc. IEEE Intl. Conf. ICASSP, 2020, 5780-578..." current
• 07:1007:10, 9 July 2020 diff hist +86 Main Page →2D Alignment

8 July 2020

• 07:5107:51, 8 July 2020 diff hist +105 Main Page →Online courses and Learning material
• 02:4602:46, 8 July 2020 diff hist +1,986 N 2014Penczek CTER Created page with "== Citation == Penczek, P. A. and Fang, J. and Li, X. and Cheng, Y. and Loerke, J. and Spahn, C. M. T. CTER-rapid Estimation of CTF Parameters With Error Assessment. Ultramic..." current
• 02:4402:44, 8 July 2020 diff hist +67 Main Page →CTF estimation and restoration

7 July 2020

• 09:5009:50, 7 July 2020 diff hist +1,290 N 2020Li Workflow Created page with "== Citation == Li, Y.; Cash, J. N.; Tesmer, J. J. G., Cianfrocco, M. A. High-Throughput Cryo-EM Enabled by User-Free Preprocessing Routines. Structure, 2020 == Abstract ==..." current
• 09:4809:48, 7 July 2020 diff hist +75 Main Page →Automated data collection
• 09:0009:00, 7 July 2020 diff hist +1,615 N 2020Vilas Review Created page with "== Citation == Vilas, JL, Heymann, JB, Tagare, H, Ramirez-Aportela, E, Carazo, JM, Sorzano, COS. Local resolution estimates of cryoEM reconstructions. Current Opinion in Stru..." current
• 08:5708:57, 7 July 2020 diff hist +65 Main Page →Books and reviews

6 July 2020

• 07:5407:54, 6 July 2020 diff hist +1,432 N 2020Strelak FlexAlign Created page with "== Citation == Strelak, D.; Filipovic, J.; Jiménez-Moreno, A.; Carazo, J. M., Sorzano, C. O. S. FlexAlign: An Accurate and Fast Algorithm for Movie Alignment in Cryo-Electro..." current
• 07:5207:52, 6 July 2020 diff hist +98 Main Page →2D Preprocessing
• 07:4007:40, 6 July 2020 diff hist +1,596 N 2020Sanchez Cleaner Created page with "== Citation == Sanchez-Garcia, R.; Segura, J.; Maluenda, D.; Sorzano, C. O. S., Carazo, J. M. MicrographCleaner: A python package for cryo-EM micrograph cleaning using deep..." current
• 07:3707:37, 6 July 2020 diff hist +135 Main Page →Automatic particle picking
• 07:2007:20, 6 July 2020 diff hist +1,802 N 2020Sazzed helices Created page with "== Citation == Sazzed, S.; Scheible, P.; Alshammari, M.; Wriggers, W., He, J. Cylindrical Similarity Measurement for Helices in Medium-Resolution Cryo-Electron Microscopy Den..." current
• 07:1707:17, 6 July 2020 diff hist +68 Main Page →Validation
• 06:5806:58, 6 July 2020 diff hist +1,319 N 2020Bromberg Aberrations Created page with "== Citation == Bromberg, R.; Guo, Y.; Borek, D., Otwinowski, Z. High-resolution cryo-EM reconstructions in the presence of substantial aberrations. IUCrJ, 202, 7, 445-452 =..." current
• 06:5506:55, 6 July 2020 diff hist +90 Main Page →Image formation

29 June 2020

• 18:4918:49, 29 June 2020 diff hist +305 Nm User talk:Garygangren Welcome! current